HHsearch alignment for GI: 254780322 and conserved domain: PRK04266
>PRK04266 fibrillarin; Provisional.
Probab=97.15 E-value=0.0013 Score=40.43 Aligned_cols=100 Identities=18% Similarity=0.189 Sum_probs=68.5
Q ss_pred HHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH------HHHHC---CCCCHHHH----CCCCCCCC
Q ss_conf 98636-8987099985998589999986269708997200113577------53110---01200110----14333522
Q gi|254780322|r 40 LNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST------LKREV---ISCPLEEI----PSISQSVD 105 (273)
Q Consensus 40 l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~------~~~~~---~~~d~e~l----~~~~~sfD 105 (273)
T Consensus 65 ~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~v-~~VD 143 (226)
T PRK04266 65 LKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHLV-EKVD 143 (226)
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHC-CCCC
T ss_conf 755675899879995477798488898751796499998270778999999850899625754678845644205-6565
Q ss_pred HHHHHHHHHCCCCH-HHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf 26666674222346-999999999818787089840686
Q gi|254780322|r 106 LILSPLNLHIINDT-LEMFSKINHMLKPGGMFLAAIPGI 143 (273)
Q Consensus 106 li~s~~~l~w~~d~-~~~l~~~~r~LkpgG~~~~s~~~~ 143 (273)
T Consensus 144 ~i~qDvAQ---~dQa~I~~~Na~~FLk~gG~~~l~iKA~ 179 (226)
T PRK04266 144 VIYQDVAQ---PNQAEIAADNADIFLKPGGYLMLAIKAR 179 (226)
T ss_pred EEEEECCC---HHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf 89960677---4289999999998601598899999742