HHsearch alignment for GI: 254780322 and conserved domain: PRK04266

>PRK04266 fibrillarin; Provisional.
Probab=97.15  E-value=0.0013  Score=40.43  Aligned_cols=100  Identities=18%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             HHHCC-CCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHH------HHHHC---CCCCHHHH----CCCCCCCC
Q ss_conf             98636-8987099985998589999986269708997200113577------53110---01200110----14333522
Q gi|254780322|r   40 LNMIN-QTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFST------LKREV---ISCPLEEI----PSISQSVD  105 (273)
Q Consensus        40 l~~~~-~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~------~~~~~---~~~d~e~l----~~~~~sfD  105 (273)
T Consensus        65 ~~~~~i~~gskVLYLGAasGTTVSHvsDiV~~G~VyAVE~spr~~RdL~~la~~R~NivPIl~DAr~P~~Y~~~v-~~VD  143 (226)
T PRK04266         65 LKNFPIKKGSKVLYLGAASGTTVSHVSDIVEEGRVYAVEFAPRVMRELLLVAEERKNIIPILGDARKPEEYAHLV-EKVD  143 (226)
T ss_pred             CCCCCCCCCCEEEEECCCCCCCHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHC-CCCC
T ss_conf             755675899879995477798488898751796499998270778999999850899625754678845644205-6565


Q ss_pred             HHHHHHHHHCCCCH-HHHHHHHHHHHCCCCEEEEEECCC
Q ss_conf             26666674222346-999999999818787089840686
Q gi|254780322|r  106 LILSPLNLHIINDT-LEMFSKINHMLKPGGMFLAAIPGI  143 (273)
Q Consensus       106 li~s~~~l~w~~d~-~~~l~~~~r~LkpgG~~~~s~~~~  143 (273)
T Consensus       144 ~i~qDvAQ---~dQa~I~~~Na~~FLk~gG~~~l~iKA~  179 (226)
T PRK04266        144 VIYQDVAQ---PNQAEIAADNADIFLKPGGYLMLAIKAR  179 (226)
T ss_pred             EEEEECCC---HHHHHHHHHHHHHHHHCCCEEEEEEEEE
T ss_conf             89960677---4289999999998601598899999742