HHsearch alignment for GI: 254780322 and conserved domain: pfam01170

>pfam01170 UPF0020 Putative RNA methylase family UPF0020. This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains.

Probab=98.81  E-value=9.8e-09  Score=70.27  Aligned_cols=125  Identities=14%  Similarity=0.143  Sum_probs=88.5

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHHHHHHCCCCEEEEECCHHHHHHHHHH----------
Q ss_conf             1746220689999999999789863689870999859985899999862697089972001135775311----------
Q gi|254780322|r   19 RQKDFSVYFLLDRVAKEIAFRLNMINQTFENALELHGITGIVGYTCMETKKIHRMIRAEISTEFSTLKRE----------   88 (273)
Q Consensus        19 ~~~~~~~~~l~~~~a~~l~~~l~~~~~~~~~vLdlGcGtG~~~~~l~~~~~~~~v~~~D~s~~~~~~~~~----------   88 (273)
T Consensus         4 R~~~~~a~-L~~~lAa~l~~-la~~~-~g~~vlDP~CGSGtilIEAa~~~~~~~~~G~Did~~~v~~A~~N~~~~g~~~~   80 (171)
T pfam01170         4 RPFNGPAP-LKATLARAMVN-LAGWK-PGDPLLDPFCGSGTILIEAALMGANVALYGSDIDRRMVRGARINAEAAGVGDK   80 (171)
T ss_pred             CCCCCCCC-CCHHHHHHHHH-HHCCC-CCCEEEECCCCCCHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCCC
T ss_conf             77899989-88999999999-85899-99978868998789999999961358953675879999999999998289984


Q ss_pred             --CCCCCHHHHCCCCCCCCHHHHHHHHHC----CCCH----HHHHHHHHHHHCCCCEEEEEECCCCCCHH
Q ss_conf             --001200110143335222666667422----2346----99999999981878708984068676334
Q gi|254780322|r   89 --VISCPLEEIPSISQSVDLILSPLNLHI----INDT----LEMFSKINHMLKPGGMFLAAIPGIGTLHE  148 (273)
Q Consensus        89 --~~~~d~e~l~~~~~sfDli~s~~~l~w----~~d~----~~~l~~~~r~LkpgG~~~~s~~~~~~~~e  148 (273)
T Consensus        81 i~~~~~D~~~l~~~~~~~d~Iv~nPPYG~r~~~~~~~~~ly~~~~~~~~~~~~--g~~~~i~~~~~~~~k  148 (171)
T pfam01170        81 IEFVQADAADLPLLNGSVDTIVTDPPYGIRIGSKGALEKLYPAFLDEAKRVLR--GRLVFATPEKKDFEK  148 (171)
T ss_pred             EEEEECCHHHCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCEEEEEECCHHHHH
T ss_conf             69997666538798788318998898201136545699999999999998689--978999968689999