HHsearch alignment for GI: 254780322 and conserved domain: pfam05185
>pfam05185 PRMT5 PRMT5 arginine-N-methyltransferase. The human homologue of yeast Skb1 (Shk1 kinase-binding protein 1) is PRMT5, an arginine-N-methyltransferase. These proteins appear to be key mitotic regulators. They play a role in Jak signalling in higher eukaryotes.
Probab=95.83 E-value=0.084 Score=29.85 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHHCCC--CCCCEEEECCCCCHHHHHHHH----HCCCCEEEEECCHHHHHH--HHH---------
Q ss_conf 068999999999978986368--987099985998589999986----269708997200113577--531---------
Q gi|254780322|r 25 VYFLLDRVAKEIAFRLNMINQ--TFENALELHGITGIVGYTCME----TKKIHRMIRAEISTEFST--LKR--------- 87 (273)
Q Consensus 25 ~~~l~~~~a~~l~~~l~~~~~--~~~~vLdlGcGtG~~~~~l~~----~~~~~~v~~~D~s~~~~~--~~~--------- 87 (273)
T Consensus 163 Y~~Ye~AI~~aL~D~~~~~~~~~~~~vI~VvGAGRGPLV~~~l~A~~~~~~~v~i~AVEKNpnA~vtL~~r~n~~~W~~~ 242 (447)
T pfam05185 163 YDQYERAIRKALLDWVPEKKKTSGTLVILVVGAGRGPLVDRALRAAEETGRKVKIYAVEKNPNAVVTLQKRVNFEEWGDK 242 (447)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHCCCC
T ss_conf 99999999999986330013677756999985896489999999999819966999995687799999998505431780
Q ss_pred -HCCCCCHHHHCCCCCCCCHHHHHHHHHCCCCH---HHHHHHHHHHHCCCCEEE
Q ss_conf -10012001101433352226666674222346---999999999818787089
Q gi|254780322|r 88 -EVISCPLEEIPSISQSVDLILSPLNLHIINDT---LEMFSKINHMLKPGGMFL 137 (273)
Q Consensus 88 -~~~~~d~e~l~~~~~sfDli~s~~~l~w~~d~---~~~l~~~~r~LkpgG~~~ 137 (273)
T Consensus 243 V~ii~~DMR~w~~p-~k~Di~VSEL-LGSFGDNELSPECLdg~q~~lk~~gIsI 294 (447)
T pfam05185 243 VTLISSDMREWKGP-EKADILVSEL-LGSFGDNELSPECLDGAQRFLKPDGISI 294 (447)
T ss_pred EEEEECCHHCCCCC-CCCCEEEEEC-CCCCCCCCCCHHHHHHHHHHCCCCCEEE
T ss_conf 69990800057998-7735897521-1666665579778778997468984682