HHsearch alignment for GI: 254780323 and conserved domain: COG0738
>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism].
Probab=97.52 E-value=0.011 Score=38.82 Aligned_cols=285 Identities=16% Similarity=0.146 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 1232799999999999999999999----877886512485446799999999999999999999996338999999999
Q gi|254780323|r 24 SEAKKFIPMTLMMFLVLFNFSTLRP----IKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVV 99 (491)
Q Consensus 24 ~E~~~~~~~~~~~F~i~~~y~~lr~----~rd~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~ 99 (491)
T Consensus 10 ~~~~~~v~~t~lFfl~G~~~~l~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~l----pa~~~~kk~gyk~gi~lgL 85 (422)
T COG0738 10 SVKLAFVLLTSLFFLWGFITCLNDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSL----PAGLLIKKLGYKAGIVLGL 85 (422)
T ss_pred CCEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHH
T ss_conf 820189999999999999962211407999999386599999999999998999861----4999998842488999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999998421001465234555531010134457876555799999--9999999999999999999986409
Q gi|254780323|r 100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALF--YVFAELWGAVMINLMFWQFANRITK 177 (491)
Q Consensus 100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~f--Yv~~e~~~~~vis~~FW~~~n~~f~ 177 (491)
T Consensus 86 ~l~avg~~lF----~pAa-------------------------~~~~y~~FL~~lFila~Gi~~Leta--aNp~v~~lg~ 134 (422)
T COG0738 86 LLYAVGAALF----WPAA-------------------------SSKSYGFFLVALFILASGIGLLETA--ANPYVTLLGK 134 (422)
T ss_pred HHHHHHHHHH----HHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHCC
T ss_conf 9999999998----6666-------------------------5112999999999998406888851--4416987277
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899899999999899999999889999996301232-------------2489999999999999999999998402452
Q gi|254780323|r 178 TEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNEL-------------MIYYSMLTLILSSILLMAVYRWMNLYVLTDP 244 (491)
Q Consensus 178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 244 (491)
T Consensus 135 ~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~--~~~k~p 212 (422)
T COG0738 135 PESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLI--LLSKLP 212 (422)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCC
T ss_conf 156889989999864169899999999999732251048889999999988756508999999999999999--843597
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Q ss_conf 23320000112345788899999983096799999999999999999999999999983299-89999999999999999
Q gi|254780323|r 245 QQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPT-QNSYAQFMGQFIQWTGI 323 (491)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~-~~~~~af~g~~~~~v~i 323 (491)
T Consensus 213 ~~~~~~~~---~~~~~~~--~~~~l~~~~~~~~gvl~~FlYVG~Eva~gsfl~~y~~~~-~g~~~~~aa~~~s~~-~~~~ 285 (422)
T COG0738 213 DLQVAAPS---LGASGSA--GLSSLFQNKHLRLGVLAIFLYVGAEVAIGSFLVSYLEEL-LGLNEQQAAYYLSFF-WVGF 285 (422)
T ss_pred CCCCCCCC---CCCCCCC--HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCCHHHHHHHHHHH-HHHH
T ss_conf 67856511---2565641--388997574899999999999849999999999999865-996389999999999-9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999978999973167899999999999
Q gi|254780323|r 324 VTIVFMILGSNILKSFRWFTSAIITPLMILI 354 (491)
Q Consensus 324 ~tii~qll~~~ll~r~G~~~~l~i~Pi~~li 354 (491)
T Consensus 286 --~vGRFig~~lm~~~~~~k~Laf~a~~~il 314 (422)
T COG0738 286 --MVGRFIGSALMSRIKPEKYLAFYALIAIL 314 (422)
T ss_pred --HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_conf --99999999999971888999999999999