HHsearch alignment for GI: 254780323 and conserved domain: PRK09584
>PRK09584 tppB putative tripeptide transporter permease; Reviewed.
Probab=95.69 E-value=0.18 Score=29.28 Aligned_cols=145 Identities=10% Similarity=0.050 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC-CHHHHHHHHH
Q ss_conf 279999999999999999999987-----78865124854467999999999999999999-9999633-8999999999
Q gi|254780323|r 27 KKFIPMTLMMFLVLFNFSTLRPIK-----DSLVVPHMGAEIISFVKLWCVFPSAILFTILY-MKLSNIL-ETEKLFYVVV 99 (491)
Q Consensus 27 ~~~~~~~~~~F~i~~~y~~lr~~r-----d~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y-~~l~~~~-~~~~l~~~~~ 99 (491)
T Consensus 21 ~gl~~lf~tE~wERFsyYGmralL~lyl~~~Lg~s~~~A~~i~g~f~al-----vYl~pi~GG~lADr~LG~r~ti~~G~ 95 (500)
T PRK09584 21 KAFYLIFSIELWERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSAL-----VYGLVAIGGWLGDKVLGTKRVIMLGA 95 (500)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 1199999999999999999999999999988499888999999999999-----99999869999896104099999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH----HHH--HHHHHHHHHHH
Q ss_conf 999999999999984210014652345555310101344578765557999999999999----999--99999999998
Q gi|254780323|r 100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELW----GAV--MINLMFWQFAN 173 (491)
Q Consensus 100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~----~~~--vis~~FW~~~n 173 (491)
T Consensus 96 il~~~G~~~La~---~~----------------~~~--------------~~~~~gL~lI~vG~G~~Kpnis----slvG 138 (500)
T PRK09584 96 IVLAIGYALVAW---SG----------------HDA--------------GIVYMGMAAIAVGNGLFKANPS----SLLS 138 (500)
T ss_pred HHHHHHHHHHHC---CC----------------CCH--------------HHHHHHHHHHHHCCCCCCCCHH----HHHH
T ss_conf 999998999972---35----------------637--------------8999999999955534676577----8887
Q ss_pred HHCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 6409899899--999999899999999889999996301232
Q gi|254780323|r 174 RITKTEEATR--FYATFGLVGNVGLIFAGGIVKTFSKLTNEL 213 (491)
Q Consensus 174 ~~f~~~qaKR--lf~li~~g~~ig~i~gg~~~~~l~~~~~~~ 213 (491)
T Consensus 139 ~lY~~~d~rrD~~FtiFYmgINiGafla~ll~g~l~~~~G~~ 180 (500)
T PRK09584 139 TCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWS 180 (500)
T ss_pred HCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_conf 605899633224422899999899999999999999873616