HHsearch alignment for GI: 254780323 and conserved domain: PRK11652
>PRK11652 emrD multidrug resistance protein D; Provisional.
Probab=99.11 E-value=3.3e-06 Score=66.73 Aligned_cols=384 Identities=10% Similarity=0.033 Sum_probs=182.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 8112327999999999999999999998778865124-854467999999999999-99999999996338999999999
Q gi|254780323|r 22 KMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHM-GAEIISFVKLWCVFPSAI-LFTILYMKLSNILETEKLFYVVV 99 (491)
Q Consensus 22 ~~~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~-g~e~lp~l~~~~~l~~s~-~~~~~y~~l~~~~~~~~l~~~~~ 99 (491)
T Consensus 3 ~~~~~~~i~~l~~l~~~~~la~d~ylPalP~ia~~~~~s~~~vq~tl--s~f~~g~a~~ql~~GpLSDr~GRk~vll~gl 80 (394)
T PRK11652 3 RQRNVNLLFMLVLLVAVGQMAQTIYVPAIADMARDLNVREGALQAVM--AAYLLTYGLSQLFYGPLSDRVGRRPVILVGM 80 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 87554799999999999999998898609999999698998999999--9999999999999999998828869999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 99999999999998421001465234555531010134457876555799999999999999999999999998640989
Q gi|254780323|r 100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTE 179 (491)
Q Consensus 100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~ 179 (491)
T Consensus 81 ~lf~i~s~~~a~a~--si~-------~l----l~~R~lQG~------------------Ga~~~-~v~~~AiirD~~~g~ 128 (394)
T PRK11652 81 SIFILGTLVALTAH--SLT-------VL----IAASAIQGM------------------GTGVG-GVMARTLPRDLYEGT 128 (394)
T ss_pred HHHHHHHHHHHHHH--HHH-------HH----HHHHHHHCC------------------CCCCC-CHHHHHHHHHCCCHH
T ss_conf 99999999999876--799-------99----999998276------------------65100-009999988636899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 98999999998999999998899999963012322489999999999999999999998402452233200001123457
Q gi|254780323|r 180 EATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLK 259 (491)
Q Consensus 180 qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (491)
T Consensus 129 ~~ak~~s~~~~~~~~~p~laP~iGg~l~~~~g---Wr~~F~~l~~~~~~~~l~~~---~~lpET---~-~-----~~~~~ 193 (394)
T PRK11652 129 QLRHANSLLNMGILFSPLLAPLIGGLLTTLFG---WRACYLFLLVFGAGVTFSMA---RWMPET---L-P-----KDARR 193 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHHHHHH---HHCCCC---C-C-----CCCCC
T ss_conf 99999999889999851026169999980055---99999999999999999999---968888---9-9-----64563
Q ss_pred CCHHHHHHHHHCCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88899999983096799999999-999999999999999999983-2998999999999999999999999999789999
Q gi|254780323|r 260 LSVLESLRMALNSKYLGYLVLLV-ICYGTAINLVEGPWKEKVRQL-YPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILK 337 (491)
Q Consensus 260 ~~~~~~~k~i~~s~yL~~l~~~v-~~~~~~~tl~e~~~k~~~~~~-~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~ 337 (491)
T Consensus 194 ~~~~~~y~~ll~~~~f~~~~l~~~~~~~~~~~f~~~~-p~v~~~~~gls~~~----~g~~f~~~~~~~~~g~~l~~rl~~ 268 (394)
T PRK11652 194 TRVLASYKTLLGNRRFNCYLLMLIATLAGIAVFEACA-GVLMGAVLGLSSMT----VSILFILPIPGYFFGAWFAGRPNK 268 (394)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0189999999867579999999999999999999964-99999982798899----999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCH
Q ss_conf 73167899999999999999999998410123466678730020799999999999999987634464668777522697
Q gi|254780323|r 338 SFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDD 417 (491)
Q Consensus 338 r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~ 417 (491)
T Consensus 269 r~~~~~~~g--~~~~~~~~~~~l~~~~~~~~~------------~~-~l~~~~~l~~----~g~G~~~p~~~a~al~~~~ 329 (394)
T PRK11652 269 RFSTLMWQS--VICCLLGGLFMWIPGWFGVMN------------VW-TLLVPAALFF----FGAGMLFPLATSGAMEPFP 329 (394)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH------------HH-HHHHHHHHHH----HHHHHHHHHHHHHHHHHCC
T ss_conf 999999999--999999999999999887745------------99-9999999999----9999888999999976484
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 673657776788876466777999999999983000023337999999999999999999997089
Q gi|254780323|r 418 EFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKE 483 (491)
Q Consensus 418 ~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~~L~~~ 483 (491)
T Consensus 330 ~~aGtAsal~-g~~q~~~~~~~~~l----~~~l~~~~~~~l~~~~~~~~~~~l~~~l~l~~r~~~~ 390 (394)
T PRK11652 330 FLAGTAGALL-GGLQNIGSGLAALL----SAMLPQTGQGSLGLLMTLMGLLILLCWLPLASRMSHQ 390 (394)
T ss_pred CCCHHHHHHH-HHHHHHHHHHHHHH----HHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 3030999999-99999999999999----9971369768999999999999999999998634456