HHsearch alignment for GI: 254780323 and conserved domain: PRK11663
>PRK11663 regulatory protein UhpC; Provisional.
Probab=98.81 E-value=3.6e-05 Score=58.58 Aligned_cols=263 Identities=13% Similarity=0.108 Sum_probs=130.9
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 99999999999999999--------8778865124854467999999999999999999999963389999999999999
Q gi|254780323|r 32 MTLMMFLVLFNFSTLRP--------IKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFV 103 (491)
Q Consensus 32 ~~~~~F~i~~~y~~lr~--------~rd~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~ 103 (491)
T Consensus 24 i~~~~fl~Y~~~y~~R~~~s~~~p~i~~e~gl---t~~q~G~i~s~f~~-~Yal~q~~~G~L~Dr~g~r~~l~~~~~~~~ 99 (434)
T PRK11663 24 IMITMYLGYALFYFTRKSFNAAMPEMLADLGL---SRSDIGLLATLFYI-TYGVSKFVSGIVSDRSNPRYFMGIGLIATG 99 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999998605799869999988497---99899999999999-999999767999987064499999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999984210014652345555310101344578765557999999999999999999999999986409899899
Q gi|254780323|r 104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATR 183 (491)
Q Consensus 104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKR 183 (491)
T Consensus 100 ~~~~~~g~~~-------------------------------~~~~~~~~r~l~G~~~~~~~p~~-~~~i~~Wfp~~eRg~ 147 (434)
T PRK11663 100 IINILFGFSS-------------------------------SLWAFALLWVLNAFFQGWGWPVC-AKLLTAWYSRTERGG 147 (434)
T ss_pred HHHHHHHHHC-------------------------------CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCHHHHHH
T ss_conf 9999999743-------------------------------28999999999999856016899-999999848888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CC-CCC
Q ss_conf 9999998999999998899999963012322489999999999999999999998402452233----------20-000
Q gi|254780323|r 184 FYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQY----------SP-KRG 252 (491)
Q Consensus 184 lf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~-~~~ 252 (491)
T Consensus 148 a~gi~~~~~~vG~~l~~~l~~~i~~~~g---Wr~~F~~~g~~~~v~~~~~~~~---~~d~P~~~g~~~~~~~~~~~~~~~ 221 (434)
T PRK11663 148 WWAIWNTAHNVGGALIPLVVGAIALHYG---WRYGMIIAGIIAIVVGLFLCWR---LRDRPQAMGLPSVGEWRHDALELA 221 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHHHHH---CCCCHHHCCCCCHHHHCCCHHHHH
T ss_conf 9999999987778888999999999806---2999999999999999999983---268876649997112102345554
Q ss_pred CCCCCCCCCHHHHH-HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11234578889999-99830967999999999999999999999999999832998999999999999999999999999
Q gi|254780323|r 253 SVKKKLKLSVLESL-RMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMIL 331 (491)
Q Consensus 253 ~~~~~~~~~~~~~~-k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll 331 (491)
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~WlP~yL~~~~g~s~~~a~~~~~l~~ig~~---iG~l~ 298 (434)
T PRK11663 222 QEQEGAGLSRKEILTKYVLLNPYIWLLSFSYVLVYVVRAAINDWGNLYLSETLGYDLVTANSAVSMFELGGF---IGSLV 298 (434)
T ss_pred HHHCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHH---HHHHH
T ss_conf 330245775899999999648899999999999999999998326588887608889999999999999999---99998
Q ss_pred HHHHHHHH
Q ss_conf 78999973
Q gi|254780323|r 332 GSNILKSF 339 (491)
Q Consensus 332 ~~~ll~r~ 339 (491)
T Consensus 299 ~G~lSDrl 306 (434)
T PRK11663 299 AGWGSDKL 306 (434)
T ss_pred HHHHHHHH
T ss_conf 88999987