HHsearch alignment for GI: 254780323 and conserved domain: TIGR00710
>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.53 E-value=0.00021 Score=52.59 Aligned_cols=264 Identities=17% Similarity=0.141 Sum_probs=159.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf 99999999999998778865124---------8544679999999999999-9999999996338999999999999999
Q gi|254780323|r 36 MFLVLFNFSTLRPIKDSLVVPHM---------GAEIISFVKLWCVFPSAIL-FTILYMKLSNILETEKLFYVVVSFFVSF 105 (491)
Q Consensus 36 ~F~i~~~y~~lr~~rd~l~~~~~---------g~e~lp~l~~~~~l~~s~~-~~~~y~~l~~~~~~~~l~~~~~~~f~~~ 105 (491)
T Consensus 6 ~~~~L~~L~~L~pl~~DMYLPa~p~i~~~L~~~as~vQ~--tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~ 83 (400)
T TIGR00710 6 FVLLLGLLSILGPLGIDMYLPAFPEIAKDLSVSASLVQL--TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALS 83 (400)
T ss_pred HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf 999998987632021125212078989862878668999--999999999998986523332036723889999999999
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHH
Q ss_conf 999999984210014652345555310101344578765557999999999999999999999999986409-8998999
Q gi|254780323|r 106 FAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK-TEEATRF 184 (491)
Q Consensus 106 ~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~-~~qaKRl 184 (491)
T Consensus 84 Sl~~~~--~~ni~--------------~L~~lRF~Q---------a~gasA----~~V~---~~AlvRD~Y~G~~e~s~~ 131 (400)
T TIGR00710 84 SLGLAL--SNNIE--------------TLLVLRFLQ---------AFGASA----ALVI---SQALVRDIYPGREELSKI 131 (400)
T ss_pred HHHHHH--HHHHH--------------HHHHHHHHH---------HHHHHH----HHHH---HHHHHHHCCCCHHHHHHH
T ss_conf 999999--85199--------------999999999---------999989----9999---998885020325789999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 99999899999999889999--9963012322489999999999999999999998402452233200001123457888
Q gi|254780323|r 185 YATFGLVGNVGLIFAGGIVK--TFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSV 262 (491)
Q Consensus 185 f~li~~g~~ig~i~gg~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (491)
T Consensus 132 ~s~l~~~~~~~P~~aP~~Ggai~~~~~l~---WhaIF~~L~l~~~~l~a~~f~~~pET-------~~~~~r~P~~~~-~~ 200 (400)
T TIGR00710 132 YSILMLVLALAPAVAPLIGGAIYVLVFLS---WHAIFAVLSLIGILLSALIFFLLPET-------LPKEKRIPLQIS-TS 200 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHCCCCHHHH-HH
T ss_conf 99999999999878888869999998520---99999999999999999999855122-------740103740300-13
Q ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999830967999999999999999999999999999832998999-9999999999999999999997899997316
Q gi|254780323|r 263 LESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY-AQFMGQFIQWTGIVTIVFMILGSNILKSFRW 341 (491)
Q Consensus 263 ~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~-~af~g~~~~~v~i~tii~qll~~~ll~r~G~ 341 (491)
T Consensus 201 ~~~f~~l~k~k~~~gY~L~~---ga~~-g~~Faf~~~~Pfv~~~~~gVsp~~fg~lf~~~~~a~i~g~f~~gr~~~k~~~ 276 (400)
T TIGR00710 201 VETFLLLLKDKEFLGYALIY---GASF-GGFFAFLSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKIGA 276 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 99986788768889999999---9986-8789999841788640014656778999999999999999999866654310
Q ss_pred HHHHHHH
Q ss_conf 7899999
Q gi|254780323|r 342 FTSAIIT 348 (491)
Q Consensus 342 ~~~l~i~ 348 (491)
T Consensus 277 ~~~lr~~ 283 (400)
T TIGR00710 277 KSLLRIA 283 (400)
T ss_pred CHHHHHH
T ss_conf 0147899