HHsearch alignment for GI: 254780323 and conserved domain: TIGR00710

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily; InterPro: IPR004812 The drug resistance transporter Bcr/CflA proteins are predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in Escherichia coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.; GO: 0005215 transporter activity, 0006810 transport, 0016021 integral to membrane.
Probab=98.53  E-value=0.00021  Score=52.59  Aligned_cols=264  Identities=17%  Similarity=0.141  Sum_probs=159.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHH
Q ss_conf             99999999999998778865124---------8544679999999999999-9999999996338999999999999999
Q gi|254780323|r   36 MFLVLFNFSTLRPIKDSLVVPHM---------GAEIISFVKLWCVFPSAIL-FTILYMKLSNILETEKLFYVVVSFFVSF  105 (491)
Q Consensus        36 ~F~i~~~y~~lr~~rd~l~~~~~---------g~e~lp~l~~~~~l~~s~~-~~~~y~~l~~~~~~~~l~~~~~~~f~~~  105 (491)
T Consensus         6 ~~~~L~~L~~L~pl~~DMYLPa~p~i~~~L~~~as~vQ~--tLt~yl~G~a~GQL~~GPlSD~~GRrPvlL~G~~~fa~~   83 (400)
T TIGR00710         6 FVLLLGLLSILGPLGIDMYLPAFPEIAKDLSVSASLVQL--TLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLLIFALS   83 (400)
T ss_pred             HHHHHHHHHHHCCCCHHHHCCHHHHHHHHHCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_conf             999998987632021125212078989862878668999--999999999998986523332036723889999999999


Q ss_pred             HHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHH
Q ss_conf             999999984210014652345555310101344578765557999999999999999999999999986409-8998999
Q gi|254780323|r  106 FAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK-TEEATRF  184 (491)
Q Consensus       106 ~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~-~~qaKRl  184 (491)
T Consensus        84 Sl~~~~--~~ni~--------------~L~~lRF~Q---------a~gasA----~~V~---~~AlvRD~Y~G~~e~s~~  131 (400)
T TIGR00710        84 SLGLAL--SNNIE--------------TLLVLRFLQ---------AFGASA----ALVI---SQALVRDIYPGREELSKI  131 (400)
T ss_pred             HHHHHH--HHHHH--------------HHHHHHHHH---------HHHHHH----HHHH---HHHHHHHCCCCHHHHHHH
T ss_conf             999999--85199--------------999999999---------999989----9999---998885020325789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH--HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             99999899999999889999--9963012322489999999999999999999998402452233200001123457888
Q gi|254780323|r  185 YATFGLVGNVGLIFAGGIVK--TFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSV  262 (491)
Q Consensus       185 f~li~~g~~ig~i~gg~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (491)
T Consensus       132 ~s~l~~~~~~~P~~aP~~Ggai~~~~~l~---WhaIF~~L~l~~~~l~a~~f~~~pET-------~~~~~r~P~~~~-~~  200 (400)
T TIGR00710       132 YSILMLVLALAPAVAPLIGGAIYVLVFLS---WHAIFAVLSLIGILLSALIFFLLPET-------LPKEKRIPLQIS-TS  200 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHCCCC-------CCHHCCCCHHHH-HH
T ss_conf             99999999999878888869999998520---99999999999999999999855122-------740103740300-13


Q ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             999999830967999999999999999999999999999832998999-9999999999999999999997899997316
Q gi|254780323|r  263 LESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSY-AQFMGQFIQWTGIVTIVFMILGSNILKSFRW  341 (491)
Q Consensus       263 ~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~-~af~g~~~~~v~i~tii~qll~~~ll~r~G~  341 (491)
T Consensus       201 ~~~f~~l~k~k~~~gY~L~~---ga~~-g~~Faf~~~~Pfv~~~~~gVsp~~fg~lf~~~~~a~i~g~f~~gr~~~k~~~  276 (400)
T TIGR00710       201 VETFLLLLKDKEFLGYALIY---GASF-GGFFAFLSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGFLNGRFIKKIGA  276 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf             99986788768889999999---9986-8789999841788640014656778999999999999999999866654310


Q ss_pred             HHHHHHH
Q ss_conf             7899999
Q gi|254780323|r  342 FTSAIIT  348 (491)
Q Consensus       342 ~~~l~i~  348 (491)
T Consensus       277 ~~~lr~~  283 (400)
T TIGR00710       277 KSLLRIA  283 (400)
T ss_pred             CHHHHHH
T ss_conf             0147899