HHsearch alignment for GI: 254780323 and conserved domain: TIGR00792
>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter; InterPro: IPR001927 It has been shown that integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families. This collection of sequences represents the sodium: galactoside symporter family (SGF). Like sugar transport proteins, these integral membrane proteins are predicted to comprise twelve membrane spanning domains. ; GO: 0005215 transporter activity, 0006814 sodium ion transport, 0016020 membrane.
Probab=99.53 E-value=8e-10 Score=95.28 Aligned_cols=382 Identities=14% Similarity=0.098 Sum_probs=212.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHH
Q ss_conf 9999999999999998778865124--8544679---9999999999999999999996338---999999999999999
Q gi|254780323|r 34 LMMFLVLFNFSTLRPIKDSLVVPHM--GAEIISF---VKLWCVFPSAILFTILYMKLSNILE---TEKLFYVVVSFFVSF 105 (491)
Q Consensus 34 ~~~F~i~~~y~~lr~~rd~l~~~~~--g~e~lp~---l~~~~~l~~s~~~~~~y~~l~~~~~---~~~l~~~~~~~f~~~ 105 (491)
T Consensus 11 ~~~~f~~v~~YL~~fyTDv~G~~a~~~G~n~~iLiTtlfl-V~Ri~dAi~DP~~G~~vD~T~~I~rwGKFRPw~L~Ga~p 89 (470)
T TIGR00792 11 NNFIFAIVSTYLLFFYTDVLGLSAAIVGANKLILITTLFL-VARILDAITDPIMGLIVDRTRNITRWGKFRPWLLIGAIP 89 (470)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEHHHH
T ss_conf 8999999999999988621568431123453267899999-999999983346756752445888796433000201789
Q ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHH
Q ss_conf 999999984210014652345555310101344578765557999999999999999999999999986409-8998999
Q gi|254780323|r 106 FAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK-TEEATRF 184 (491)
Q Consensus 106 ~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~-~~qaKRl 184 (491)
T Consensus 90 ~~~~~vL~F~~~~~~~~~n~~~-----------------~~v~a~~tYi~~g~~Ys~~-niPy~sl~p~~T~d~~ER~~l 151 (470)
T TIGR00792 90 FAIVLVLLFTTPDFSATGNPIG-----------------KLVYAYITYILLGLFYSFV-NIPYWSLVPAITLDPRERESL 151 (470)
T ss_pred HHHHHHHHHHCCCCCCCCHHHH-----------------HHHHHHHHHHHHHHHHHHH-CCCCCCHHHHCCCCCCCCEEH
T ss_conf 9999999982457554311778-----------------9999999999984662210-136210354325783100212
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 9999989999999988999999630123------2248999999999999999999999840245223320000112345
Q gi|254780323|r 185 YATFGLVGNVGLIFAGGIVKTFSKLTNE------LMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKL 258 (491)
Q Consensus 185 f~li~~g~~ig~i~gg~~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (491)
T Consensus 152 ~~~r~~~a~~G~~~~~~~~~P~~~~~~~~~~~~~~~~G~~~~~~i~~~~g~~~~~----~c~~~tkE~~~~~~~~~~~~~ 227 (470)
T TIGR00792 152 STFRRFGATLGGLLVAVIVLPLVSYFGGISAGEDDKLGWFMFALILALIGVVLLI----ICFFGTKERVSVSEIPKKSEK 227 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH----HHHCCCCCEEECCCCCCCCCC
T ss_conf 0187899999999999999999986066546888850589999999999999999----871677321310332113567
Q ss_pred CCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 78889999998309679999999999999999999999999998329989999999999999999999999997899997
Q gi|254780323|r 259 KLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKS 338 (491)
Q Consensus 259 ~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r 338 (491)
T Consensus 228 ~~~~~~~~~~l~~N~qL~~l~~~~l~~~~a~~i~~~~~~YYf~Yv-lg~~~lf~~~~~~~~--~~~~l~~~~l~P~l~k~ 304 (470)
T TIGR00792 228 KLSLKKIFKALFKNDQLLILCLAYLFYLLAFNIKNGVQVYYFTYV-LGDPELFSILGLIAF--IGAGLIGVLLFPRLVKK 304 (470)
T ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHEEEEEE-ECCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
T ss_conf 786899999985288899999999999999998765630234577-466789999999999--99999999878778876
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
Q ss_conf 31678999999999999999999984-101234-6667873002079999999999999998763446466877752269
Q gi|254780323|r 339 FRWFTSAIITPLMILITGGGFFVFVI-FEDALL-PFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLD 416 (491)
Q Consensus 339 ~G~~~~l~i~Pi~~li~~~~ff~~~~-~~~~~~-~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~ 416 (491)
T Consensus 305 ~grk~~~~~~~~~~~~g~l~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~w~~~vi~~~D~VdYGE~k~G~-------- 376 (470)
T TIGR00792 305 FGRKRLFLIGILLMVLGLLILFFVGKASNLPLILVLIIIAGFGQNFVTGLVWALQVIMVADTVDYGEWKTGV-------- 376 (470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEHHHCCCCC--------
T ss_conf 125999999999999999999873167799999999999988776778987888864420232210201485--------
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 76736577-7678887646677799999999998300
Q gi|254780323|r 417 DEFRTKGK-AVVDVIGGRMAKSGGAVIQSFIFMLFPM 452 (491)
Q Consensus 417 ~~~R~k~K-~~iD~~~~r~Gk~~gs~~~~~l~~~~~~ 452 (491)
T Consensus 377 ---R~Eg~~~S~~~f~~K~G~A~~g~~~G~~L~~~GY 410 (470)
T TIGR00792 377 ---RAEGLVYSVRTFVRKLGQALAGFLVGLILGIIGY 410 (470)
T ss_pred ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---5079999999999999889989999999997277