HHsearch alignment for GI: 254780323 and conserved domain: TIGR00882
>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=98.31 E-value=9.1e-05 Score=55.39 Aligned_cols=366 Identities=17% Similarity=0.204 Sum_probs=227.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 232799999999999999999999--877886512485446799999999999999999999996338999999999999
Q gi|254780323|r 25 EAKKFIPMTLMMFLVLFNFSTLRP--IKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFF 102 (491)
Q Consensus 25 E~~~~~~~~~~~F~i~~~y~~lr~--~rd~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f 102 (491)
T Consensus 3 ~f~~f~~ffFlyFfim~~~fpf~piWL~~~~gl~kt~tGi---~fs~~sl-~si~Fqp~~G~~sDkLGLkK~LlW~is~l 78 (397)
T TIGR00882 3 NFWIFGLFFFLYFFIMSAYFPFFPIWLKDVNGLTKTETGI---VFSCISL-FSILFQPLFGLISDKLGLKKHLLWIISLL 78 (397)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf 5120388999999999988533477884225477763577---8888999-99987666400201235506899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCHHH
Q ss_conf 99999999998421001465234555531010134457876555799999999999999999999999--9986409899
Q gi|254780323|r 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQ--FANRITKTEE 180 (491)
Q Consensus 103 ~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~--~~n~~f~~~q 180 (491)
T Consensus 79 LvlfaPF--fiyVf~PLL~~N----------------------i~~G~l-------~Gg~y~G~~f~AG~Ga~eayiEkv 127 (397)
T TIGR00882 79 LVLFAPF--FIYVFAPLLQSN----------------------ILVGAL-------VGGLYLGFVFSAGAGAIEAYIEKV 127 (397)
T ss_pred HHHHHHH--HHHHHHHHHHHH----------------------HHHHHH-------HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 9986159--989867799989----------------------999999-------869998778732573468889787
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8999---9999989999999988999999630123224899999999999999999999984024522332000011234
Q gi|254780323|r 181 ATRF---YATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKK 257 (491)
Q Consensus 181 aKRl---f~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (491)
T Consensus 128 sR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~i~p~~~FWl~S~~a~~l~~ll~-----~~k--~~~~~~A~V~~a~gAn~ 200 (397)
T TIGR00882 128 SRNSNFEYGKARMFGCVGWALCASIAGILFSIDPSIVFWLGSGFALILMLLLM-----VAK--PKSSDSAEVANALGANA 200 (397)
T ss_pred HHCCCCCCCEEEEEEECHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH-----HHC--CCCCCHHHHHHHHHCCC
T ss_conf 52479840017888721378776530300300664145788999999999997-----616--99872689999873380
Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57888999999830967999999999999999999999-99999983299899999999999999999999999978999
Q gi|254780323|r 258 LKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGP-WKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNIL 336 (491)
Q Consensus 258 ~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~-~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll 336 (491)
T Consensus 201 ~~~~-~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFDQQlFa~Ff~~fF~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~ii 279 (397)
T TIGR00882 201 SAIS-LKDALELFRQRRLWVFVLYVVGVACVYDVFDQQLFAVFFKGFFATPQQGTRVFGYVTTAGELLNALIMFCAPLII 279 (397)
T ss_pred CCCC-HHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf 0016-789999717998657888666100023101210037786554057677627665301288999999998703776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
Q ss_conf 97316789999999999999999999841012346667873002079999999999999998763446466877752269
Q gi|254780323|r 337 KSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLD 416 (491)
Q Consensus 337 ~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~ 416 (491)
T Consensus 280 NRiG~KNaLLiag~IM~~RI---~gssf~~~~~ev~~lK~LH~----~EvPf-----llvg~FKYi~-----------~~ 336 (397)
T TIGR00882 280 NRIGAKNALLIAGLIMAVRI---LGSSFATTAVEVVILKMLHA----LEVPF-----LLVGAFKYIT-----------SV 336 (397)
T ss_pred HCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHEE-----------CC
T ss_conf 16671589999999999999---98887766999999999888----76268-----9864554111-----------11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHH
Q ss_conf 7673657776788876466777999999999-98300002333
Q gi|254780323|r 417 DEFRTKGKAVVDVIGGRMAKSGGAVIQSFIF-MLFPMATFSSI 458 (491)
Q Consensus 417 ~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~-~~~~~~~~~~~ 458 (491)
T Consensus 337 F~~rLSaTiyL--iGF~~~kqla~i~LS~~~G~lyd~~Gfq~~ 377 (397)
T TIGR00882 337 FDKRLSATIYL--IGFQFAKQLAAILLSTFAGNLYDRIGFQTA 377 (397)
T ss_pred CCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf 15522567889--999998888899999877767630244799