HHsearch alignment for GI: 254780323 and conserved domain: TIGR00882

>TIGR00882 2A0105 oligosaccharide:H+ symporter; InterPro: IPR000576 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) . The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli .; GO: 0005403 hydrogen:sugar symporter activity, 0006810 transport, 0016020 membrane.
Probab=98.31  E-value=9.1e-05  Score=55.39  Aligned_cols=366  Identities=17%  Similarity=0.204  Sum_probs=227.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf             232799999999999999999999--877886512485446799999999999999999999996338999999999999
Q gi|254780323|r   25 EAKKFIPMTLMMFLVLFNFSTLRP--IKDSLVVPHMGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFF  102 (491)
Q Consensus        25 E~~~~~~~~~~~F~i~~~y~~lr~--~rd~l~~~~~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f  102 (491)
T Consensus         3 ~f~~f~~ffFlyFfim~~~fpf~piWL~~~~gl~kt~tGi---~fs~~sl-~si~Fqp~~G~~sDkLGLkK~LlW~is~l   78 (397)
T TIGR00882         3 NFWIFGLFFFLYFFIMSAYFPFFPIWLKDVNGLTKTETGI---VFSCISL-FSILFQPLFGLISDKLGLKKHLLWIISLL   78 (397)
T ss_pred             CEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH---HHHHHHH-HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
T ss_conf             5120388999999999988533477884225477763577---8888999-99987666400201235506899999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHCCHHH
Q ss_conf             99999999998421001465234555531010134457876555799999999999999999999999--9986409899
Q gi|254780323|r  103 VSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQ--FANRITKTEE  180 (491)
Q Consensus       103 ~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~--~~n~~f~~~q  180 (491)
T Consensus        79 LvlfaPF--fiyVf~PLL~~N----------------------i~~G~l-------~Gg~y~G~~f~AG~Ga~eayiEkv  127 (397)
T TIGR00882        79 LVLFAPF--FIYVFAPLLQSN----------------------ILVGAL-------VGGLYLGFVFSAGAGAIEAYIEKV  127 (397)
T ss_pred             HHHHHHH--HHHHHHHHHHHH----------------------HHHHHH-------HHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             9986159--989867799989----------------------999999-------869998778732573468889787


Q ss_pred             HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             8999---9999989999999988999999630123224899999999999999999999984024522332000011234
Q gi|254780323|r  181 ATRF---YATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKK  257 (491)
Q Consensus       181 aKRl---f~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  257 (491)
T Consensus       128 sR~~~FEYG~aR~fGc~GwAlcA~~~GIlF~i~p~~~FWl~S~~a~~l~~ll~-----~~k--~~~~~~A~V~~a~gAn~  200 (397)
T TIGR00882       128 SRNSNFEYGKARMFGCVGWALCASIAGILFSIDPSIVFWLGSGFALILMLLLM-----VAK--PKSSDSAEVANALGANA  200 (397)
T ss_pred             HHCCCCCCCEEEEEEECHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHHHHH-----HHC--CCCCCHHHHHHHHHCCC
T ss_conf             52479840017888721378776530300300664145788999999999997-----616--99872689999873380


Q ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57888999999830967999999999999999999999-99999983299899999999999999999999999978999
Q gi|254780323|r  258 LKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGP-WKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNIL  336 (491)
Q Consensus       258 ~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~-~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll  336 (491)
T Consensus       201 ~~~~-~~~~~~lFr~r~~W~f~lyvvGv~~~YdvFDQQlFa~Ff~~fF~~~~~Gtr~fGy~tt~ge~lnA~iMf~~P~ii  279 (397)
T TIGR00882       201 SAIS-LKDALELFRQRRLWVFVLYVVGVACVYDVFDQQLFAVFFKGFFATPQQGTRVFGYVTTAGELLNALIMFCAPLII  279 (397)
T ss_pred             CCCC-HHHHHHHHCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_conf             0016-789999717998657888666100023101210037786554057677627665301288999999998703776


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECC
Q ss_conf             97316789999999999999999999841012346667873002079999999999999998763446466877752269
Q gi|254780323|r  337 KSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLD  416 (491)
Q Consensus       337 ~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~  416 (491)
T Consensus       280 NRiG~KNaLLiag~IM~~RI---~gssf~~~~~ev~~lK~LH~----~EvPf-----llvg~FKYi~-----------~~  336 (397)
T TIGR00882       280 NRIGAKNALLIAGLIMAVRI---LGSSFATTAVEVVILKMLHA----LEVPF-----LLVGAFKYIT-----------SV  336 (397)
T ss_pred             HCCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH----HHHHH-----HHHHHHHHEE-----------CC
T ss_conf             16671589999999999999---98887766999999999888----76268-----9864554111-----------11


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHCCHHHHH
Q ss_conf             7673657776788876466777999999999-98300002333
Q gi|254780323|r  417 DEFRTKGKAVVDVIGGRMAKSGGAVIQSFIF-MLFPMATFSSI  458 (491)
Q Consensus       417 ~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~-~~~~~~~~~~~  458 (491)
T Consensus       337 F~~rLSaTiyL--iGF~~~kqla~i~LS~~~G~lyd~~Gfq~~  377 (397)
T TIGR00882       337 FDKRLSATIYL--IGFQFAKQLAAILLSTFAGNLYDRIGFQTA  377 (397)
T ss_pred             CCCCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             15522567889--999998888899999877767630244799