HHsearch alignment for GI: 254780323 and conserved domain: pfam03209
>pfam03209 PUCC PUCC protein. This protein is required for high-level transcription of the PUC operon.
Probab=94.22 E-value=0.43 Score=26.35 Aligned_cols=173 Identities=13% Similarity=0.075 Sum_probs=103.2
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999986409899899999999899999999889999996301232248999999999999999999999840245223
Q gi|254780323|r 167 MFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQ 246 (491)
Q Consensus 167 ~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 246 (491)
T Consensus 109 ~~lALlad~t~e~~R~~~v~i~w~Mli~G~ivtA~i~g~lL~~fs~~rLi~v~~~~a~i~~~l~~~A~w---g~E~---- 181 (402)
T pfam03209 109 VGLALATDLADEEDRPKVVGLMYVMLLVGIIVSAITVGWLLADFSPARLIQVIQGVALATMVLNVIALW---KQEA---- 181 (402)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCC----
T ss_conf 899999853886566999999999999999999999999756469999999999999999999999983---5666----
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHH
Q ss_conf 32000011234578889999998309679999999999999999999999999998329-98999999999999999999
Q gi|254780323|r 247 YSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYP-TQNSYAQFMGQFIQWTGIVT 325 (491)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~-~~~~~~af~g~~~~~v~i~t 325 (491)
T Consensus 182 r~~~~~~~~~~~~~~f~~a~~~~~~~p~ar~F~~fv~l~~la~~mQD~iLEPygg~VFGmsv~eTT~Lta~~----~~G~ 257 (402)
T pfam03209 182 RRPSRPREEPRPEPSFLEAWLLFVAEPQARRFLFFLGLGTLAFFMQDVLLEPYGGEVFGLTVGETTKLTAFF----AGGT 257 (402)
T ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHHHHHHHH----HHHH
T ss_conf 775545677778965999999998398730027799999999984201247640256077865769999999----8899
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHH
Q ss_conf 999999789-9997316789999999
Q gi|254780323|r 326 IVFMILGSN-ILKSFRWFTSAIITPL 350 (491)
Q Consensus 326 ii~qll~~~-ll~r~G~~~~l~i~Pi 350 (491)
T Consensus 258 L~G~~~~g~~l~~~~~~~~~a~~G~~ 283 (402)
T pfam03209 258 LVGFGLAGRVLSRGLDPFRMAGWGCA 283 (402)
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999998657775889999999