HHsearch alignment for GI: 254780323 and conserved domain: pfam03825
>pfam03825 Nuc_H_symport Nucleoside H+ symporter.
Probab=99.33 E-value=3.1e-07 Score=74.91 Aligned_cols=336 Identities=13% Similarity=0.123 Sum_probs=170.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHH
Q ss_conf 48544679999999999999999999999633899999999999999999999998421001465234555531010134
Q gi|254780323|r 58 MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYL 137 (491)
Q Consensus 58 ~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 137 (491)
T Consensus 34 fs~~qIG~i~a~~~-i~~iv~p~~wG~lADr~~~~~~vl~~~~~~~~~~~~~-~~~~-----------------~----- 89 (400)
T pfam03825 34 FAGAQIGLVYSSWG-IAAIVMPFLSGIIADRWFSAERVLAVCHLIGAVALFG-AAQV-----------------T----- 89 (400)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH-HHHH-----------------C-----
T ss_conf 89999999999999-9999999999999834564789999999999999999-9985-----------------2-----
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
Q ss_conf 45787655579999999999999999999999999864098998999999998999999998899999963012322489
Q gi|254780323|r 138 KWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYY 217 (491)
Q Consensus 138 ~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~ 217 (491)
T Consensus 90 -------~f~~~~~~~~~~~~~~~p~lp-L~dsi~~~~l--~~~~~~Yg~iRlwGSiGfi~a~~~~g~~~~~~~~~~~~- 158 (400)
T pfam03825 90 -------TFWPFFAVYLVNSLAYMPTLA-LTNSIAFANL--RDPVTDFPPIRVGGTVGWILASWPFVMWLVSLATVELS- 158 (400)
T ss_pred -------CHHHHHHHHHHHHHHHCCHHH-HHHHHHHHHH--CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHH-
T ss_conf -------499999999999999835057-8999999971--27567787203576499999998899999995012056-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999840245223320000112345788899999983096799999999999999999999999
Q gi|254780323|r 218 SMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWK 297 (491)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k 297 (491)
T Consensus 159 -~~~~~i~~~~~~ll~~~~-~~l---p~~p~~~-~~~~~~~~~~~~~-~~~lLk~~~~~~Fl~~~~l~~~~h~~yy~F~s 231 (400)
T pfam03825 159 -RWQLLIAAGVSALLAGYA-LTL---PHTPAKR-KADDSVDKLLGLD-AFKLLKNPRMAVFFVFSFLLGAILQIYNVFAN 231 (400)
T ss_pred -HHHHHHHHHHHHHHHHHH-HHC---CCCCCCC-CCCCCCHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -799999999999999999-738---8888766-5554200020257-99996591499999999999989999999899
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99998329989999999999999999-99999999789999731678999999999999999999984101234666787
Q gi|254780323|r 298 EKVRQLYPTQNSYAQFMGQFIQWTGI-VTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDV 376 (491)
Q Consensus 298 ~~~~~~~~~~~~~~af~g~~~~~v~i-~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~ 376 (491)
T Consensus 232 ~yl~~~gg~~~~~~~~----~~~lgvvaEI~~f~~~~~ll~r~g~~~lll~a~~~~~---lR~~l~a~~~~~~~------ 298 (400)
T pfam03825 232 AFLTNFVGFAVKLASI----VLSLGQVAEIIFMLTLPFFLKRFGIKVVMLVGVVAWA---LRFAFFAYGADPVP------ 298 (400)
T ss_pred HHHHHCCCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH---HHHHHHHHCCCCHH------
T ss_conf 9999847726779999----9999999999999999999998489999999999999---99999994267403------
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 3002079999999999999998763446-466877752269767365777678887646677799999999998300002
Q gi|254780323|r 377 IKLVPLALAVFLGSLQNVLSKATKYTMF-DSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATF 455 (491)
Q Consensus 377 ~~~~~l~~~v~~~~i~~~~~k~~kYsl~-~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~ 455 (491)
T Consensus 299 -----~~--~~~-l~l~q~LHg~tfg~f~~a~~~~v~~~~p~~~ra~~Q~l~~~~~~G~g~~iG~~~~G~l~~~f~~~~~ 370 (400)
T pfam03825 299 -----FG--VAL-LLLSMIVHGVAYDFFNITGYIFVDKEVPKDIRASAQGLFNLMINGVGNVLGSILSGMLVGMFTTDGS 370 (400)
T ss_pred -----HH--HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf -----79--999-9999999999999999999999998688553879999999999708999999999999999706776
Q ss_pred H
Q ss_conf 3
Q gi|254780323|r 456 S 456 (491)
Q Consensus 456 ~ 456 (491)
T Consensus 371 ~ 371 (400)
T pfam03825 371 V 371 (400)
T ss_pred C
T ss_conf 8