HHsearch alignment of GI: 254780323 and MMDB domain: 2cfq_A_

>2cfq_A (A:) Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli}
Probab=99.27  E-value=7.2e-09  Score=87.24  Aligned_cols=371  Identities=11%  Similarity=0.114  Sum_probs=196.5

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf             81123279999999999999999999987788651248--5446799999999999999999999996338999999999
Q gi|254780323|r   22 KMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMG--AEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVV   99 (491)
Q Consensus        22 ~~~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g--~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~   99 (491)
                      ++-+.|.+..+.+..|+..+++...-|.--....+..|  +..+-.+.....+ ...+..+..+++.||++||+.+....
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~i~~~~~G~l~Dr~grr~~l~~~~   80 (417)
T 2cfq_A            2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWII   80 (417)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHH-HHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf             97647069999999999999999999999999998029999999999999999-99999999999999817439999999


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf             999999999999984210014652345555310101344578765557999999999999999999999999986409--
Q gi|254780323|r  100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK--  177 (491)
Q Consensus       100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~--  177 (491)
                      .........+..........                           |......+........... .......+...  
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  132 (417)
T 2cfq_A           81 TGMLVMFAPFFIFIFGPLLQ---------------------------YNILVGSIVGGIYLGFCFN-AGAPAVEAFIEKV  132 (417)
T ss_dssp             HHTTSCHHHHHHHTHHHHHH---------------------------TTCCHHHHGGGSSTTHHHH-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHH---------------------------HHHHHHHHHHHCCCCCCCH-HHHHHHHHCCCCH
T ss_conf             99999877655311213678---------------------------8899888776302223312-4555432203312


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf             89989999999989999999988999999630123224899999999999999999999984024522332000011234
Q gi|254780323|r  178 TEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKK  257 (491)
Q Consensus       178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  257 (491)
                      .++..|.++....++++|..+|+.....+....+...................       ......+++....+.+++++
T Consensus       133 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~  205 (417)
T 2cfq_A          133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF-------FAKTDAPSSATVANAVGANH  205 (417)
T ss_dssp             HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSC-------SSCCCCSCSSCSSSSSSSCC
T ss_pred             HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------EECCCCCHHHHHHCCCCCCC
T ss_conf             45556666666665213334454323433234664211267777777654421-------01036730233210000113


Q ss_pred             CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             57888999999830967999999999999999999999999999832998999999999999999999999999789999
Q gi|254780323|r  258 LKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILK  337 (491)
Q Consensus       258 ~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~  337 (491)
                      .+ ...+..+...+..................................+...-....+.......+..++..++.+++.+
T Consensus       206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  284 (417)
T 2cfq_A          206 SA-FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN  284 (417)
T ss_dssp             CC-CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf             33-33322211222221036788899987653222332101110001222222222222221000111112201222222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHEECC
Q ss_conf             7316789999999999999999999841012346667873002079999999999999998763446-466877752269
Q gi|254780323|r  338 SFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMF-DSTKEMAFIPLD  416 (491)
Q Consensus       338 r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~-~p~~E~l~~pl~  416 (491)
                      |+|-+..+.+.-+...+....   ..... ..             . ......+   + -..-++.. -+.....-.-.|
T Consensus       285 r~g~~~~~~~~~~~~~~~~~~---~~~~~-~~-------------~-~~~~~~~---l-~g~~~~~~~~~~~~~~~~~~~  342 (417)
T 2cfq_A          285 RIGGKNALLLAGTIMSVRIIG---SSFAT-SA-------------L-EVVILKT---L-HMFEVPFLLVGCFKYITSQFE  342 (417)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHH---HTTCC-SH-------------H-HHHHHTT---H-HHHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHH---HCCCC-CH-------------H-HHHHHHH---H-HHHHHHHHHHHHHHHHHHHCC
T ss_conf             222211104667899988640---00111-11-------------7-8899999---9-999999999999999999879


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             76736577767888764667779999999999830
Q gi|254780323|r  417 DEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFP  451 (491)
Q Consensus       417 ~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~  451 (491)
                      ++.|.++.+....+...+|...|..+...+...++
T Consensus       343 ~~~~g~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g  377 (417)
T 2cfq_A          343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG  377 (417)
T ss_dssp             HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             73899999999999999999999999999999979