HHsearch alignment of GI: 254780323 and MMDB domain: 2cfq_A_
>2cfq_A (A:) Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli}
Probab=99.27 E-value=7.2e-09 Score=87.24 Aligned_cols=371 Identities=11% Similarity=0.114 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 81123279999999999999999999987788651248--5446799999999999999999999996338999999999
Q gi|254780323|r 22 KMSEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHMG--AEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVV 99 (491)
Q Consensus 22 ~~~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~g--~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~ 99 (491)
++-+.|.+..+.+..|+..+++...-|.--....+..| +..+-.+.....+ ...+..+..+++.||++||+.+....
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~l-~~~i~~~~~G~l~Dr~grr~~l~~~~ 80 (417)
T 2cfq_A 2 YYLKNTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWII 80 (417)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHH-HHHHHHHHHHHHHTTSTTCCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_conf 97647069999999999999999999999999998029999999999999999-99999999999999817439999999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--
Q ss_conf 999999999999984210014652345555310101344578765557999999999999999999999999986409--
Q gi|254780323|r 100 SFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITK-- 177 (491)
Q Consensus 100 ~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~-- 177 (491)
.........+.......... |......+........... .......+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 132 (417)
T 2cfq_A 81 TGMLVMFAPFFIFIFGPLLQ---------------------------YNILVGSIVGGIYLGFCFN-AGAPAVEAFIEKV 132 (417)
T ss_dssp HHTTSCHHHHHHHTHHHHHH---------------------------TTCCHHHHGGGSSTTHHHH-TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHH---------------------------HHHHHHHHHHHCCCCCCCH-HHHHHHHHCCCCH
T ss_conf 99999877655311213678---------------------------8899888776302223312-4555432203312
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 89989999999989999999988999999630123224899999999999999999999984024522332000011234
Q gi|254780323|r 178 TEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKK 257 (491)
Q Consensus 178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (491)
.++..|.++....++++|..+|+.....+....+................... ......+++....+.+++++
T Consensus 133 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 205 (417)
T 2cfq_A 133 SRRSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLF-------FAKTDAPSSATVANAVGANH 205 (417)
T ss_dssp HHHHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSC-------SSCCCCSCSSCSSSSSSSCC
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH-------EECCCCCHHHHHHCCCCCCC
T ss_conf 45556666666665213334454323433234664211267777777654421-------01036730233210000113
Q ss_pred CCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 57888999999830967999999999999999999999999999832998999999999999999999999999789999
Q gi|254780323|r 258 LKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILK 337 (491)
Q Consensus 258 ~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~ 337 (491)
.+ ...+..+...+..................................+...-....+.......+..++..++.+++.+
T Consensus 206 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 284 (417)
T 2cfq_A 206 SA-FSLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIIN 284 (417)
T ss_dssp CC-CCHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCC
T ss_conf 33-33322211222221036788899987653222332101110001222222222222221000111112201222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHEECC
Q ss_conf 7316789999999999999999999841012346667873002079999999999999998763446-466877752269
Q gi|254780323|r 338 SFRWFTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMF-DSTKEMAFIPLD 416 (491)
Q Consensus 338 r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~-~p~~E~l~~pl~ 416 (491)
|+|-+..+.+.-+...+.... ..... .. . ......+ + -..-++.. -+.....-.-.|
T Consensus 285 r~g~~~~~~~~~~~~~~~~~~---~~~~~-~~-------------~-~~~~~~~---l-~g~~~~~~~~~~~~~~~~~~~ 342 (417)
T 2cfq_A 285 RIGGKNALLLAGTIMSVRIIG---SSFAT-SA-------------L-EVVILKT---L-HMFEVPFLLVGCFKYITSQFE 342 (417)
T ss_dssp HHCHHHHHHHHHHHHHHHHHH---HTTCC-SH-------------H-HHHHHTT---H-HHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCHHHHHHHHHHHHHH---HCCCC-CH-------------H-HHHHHHH---H-HHHHHHHHHHHHHHHHHHHCC
T ss_conf 222211104667899988640---00111-11-------------7-8899999---9-999999999999999999879
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76736577767888764667779999999999830
Q gi|254780323|r 417 DEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFP 451 (491)
Q Consensus 417 ~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~ 451 (491)
++.|.++.+....+...+|...|..+...+...++
T Consensus 343 ~~~~g~~~~~~~~~~~~lg~~~g~~~~g~l~~~~g 377 (417)
T 2cfq_A 343 VRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIG 377 (417)
T ss_dssp HHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 73899999999999999999999999999999979