HHsearch results for GI: 254780323 and protein with PDBid: 2cfq_A
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A
Probab=97.60 E-value=0.0055 Score=39.58 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=70.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 86409899899999999899999999889999996301232248999999999999999999999840245223320000
Q gi|254780323|r 173 NRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRG 252 (491)
Q Consensus 173 n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 252 (491)
.............+........+...+........++.+......... ...++..... .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~~-----~-------------- 307 (417)
T 2cfq_A 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG--TIMSVRIIGS-----S-------------- 307 (417)
T ss_dssp HTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHH-----T--------------
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHH-----H--------------
T ss_conf 886301111101101344321001122222454310000378999999--9999999886-----2--------------
Q ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 1123457888999999830967999999999999999999999999999832998999999999999999-999999999
Q gi|254780323|r 253 SVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIVFMIL 331 (491)
Q Consensus 253 ~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii~qll 331 (491)
...+++.. ....++.++............+.+..| ++++.+.+|......+ +-..+...+
T Consensus 308 ----------------~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~ig~~~ 368 (417)
T 2cfq_A 308 ----------------FATSALEV--VILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp ----------------TCCSHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred ----------------CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------24669999--999999999999999999999999879-72899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899997316789999999999
Q gi|254780323|r 332 GSNILKSFRWFTSAIITPLMIL 353 (491)
Q Consensus 332 ~~~ll~r~G~~~~l~i~Pi~~l 353 (491)
.+.+.+++|+..+..+.-.+.+
T Consensus 369 ~G~l~~~~g~~~~~~~~~~~~~ 390 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHH
T ss_conf 9999999798999999999999