Query gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 491
No_of_seqs 146 out of 477
Neff 8.3
Searched_HMMs 23785
Date Mon May 30 09:34:57 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780323.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pw4_A Glycerol-3-phosphate tr 99.5 9E-09 3.8E-13 85.3 41.9 249 58-342 59-318 (451)
2 2cfq_A Lactose permease; trans 99.1 8.7E-08 3.7E-12 77.5 22.2 367 26-449 6-375 (417)
3 3o7q_A L-fucose-proton symport 98.9 9.6E-06 4E-10 61.4 44.5 296 24-352 23-335 (438)
4 2gfp_A EMRD, multidrug resista 98.7 1.6E-06 6.7E-11 67.5 16.5 148 31-211 4-152 (375)
5 2cfq_A Lactose permease; trans 97.6 0.0055 2.3E-07 39.6 17.0 141 173-353 249-390 (417)
6 1pw4_A Glycerol-3-phosphate tr 97.4 0.0092 3.9E-07 37.8 22.8 75 413-490 373-447 (451)
7 3o7q_A L-fucose-proton symport 93.6 0.33 1.4E-05 25.5 20.9 27 147-179 65-91 (438)
8 1kf6_D Fumarate reductase 13 k 29.4 16 0.00066 12.3 1.9 30 178-207 8-37 (119)
9 1pc3_A Phosphate-binding prote 18.4 25 0.001 10.8 1.5 25 406-430 324-348 (350)
10 3p4i_A Acetate kinase; structu 15.2 29 0.0012 10.2 3.5 23 421-443 289-311 (392)
No 1
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.54 E-value=9e-09 Score=85.28 Aligned_cols=249 Identities=8% Similarity=-0.046 Sum_probs=133.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHH
Q ss_conf 48544679999999999999999999999633899999999999999999999998421001465234555531010134
Q gi|254780323|r 58 MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYL 137 (491)
Q Consensus 58 ~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~ 137 (491)
.+.+.+.++.....+ ...+..+..+++.+|++||+.+.......++..+++++.-....
T Consensus 59 ~s~~~~g~i~s~~~~-~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~-------------------- 117 (451)
T 1pw4_A 59 FSRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS-------------------- 117 (451)
T ss_dssp TCSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS--------------------
T ss_pred CCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------
T ss_conf 499999999999999-99999999999999809799999999999999999999988888--------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC--H
Q ss_conf 45787655579999999999999999999999999864098998999999998999999998899999963012322--4
Q gi|254780323|r 138 KWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELM--I 215 (491)
Q Consensus 138 ~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~--~ 215 (491)
+.|..........+....... .--.++.|.+.++|-.+..++...+.++|..+++..........+... .
T Consensus 118 -------~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~ 189 (451)
T 1pw4_A 118 -------SIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL 189 (451)
T ss_dssp -------SSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCT
T ss_pred -------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -------999999999999885898889-999999997799982631021055642688999999999986655788988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC---------CCCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999999840245223---------3200001123457888999999830967999999999999
Q gi|254780323|r 216 YYSMLTLILSSILLMAVYRWMNLYVLTDPQQ---------YSPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYG 286 (491)
Q Consensus 216 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~ 286 (491)
...........+... ...+..+.+... ...+..++++++........+.+.++|.+..++...++..
T Consensus 190 ~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (451)
T 1pw4_A 190 YMPAFCAILVALFAF----AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVY 265 (451)
T ss_dssp HHHHHHHHHHHHHHH----HHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHCCCCHHCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_conf 898999999999999----9723450001320377887754323333332101113577888842318999999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999983299899999999999999999999999978999973167
Q gi|254780323|r 287 TAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWF 342 (491)
Q Consensus 287 ~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~ 342 (491)
..........-....+....+.+...... ....+..++..++.+++.+|.+-.
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~~~~~~ 318 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAY---FLYEYAGIPGTLLCGWMSDKVFRG 318 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99998887788999871489700347999---998999999999989999997322
No 2
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A
Probab=99.13 E-value=8.7e-08 Score=77.50 Aligned_cols=367 Identities=11% Similarity=0.083 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 327999999999999999999998778865124--854467999999999999999999999963389999999999999
Q gi|254780323|r 26 AKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPHM--GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFV 103 (491)
Q Consensus 26 ~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~~--g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~ 103 (491)
-|.++.+.+.+|+..+++...-|.=.....+.. +++.+-.+.....+ ...+..+..+++.||++|||.+........
T Consensus 6 n~~f~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~G~i~s~~~l-~~~~~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T 2cfq_A 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTTTCCCTTTSHHHHHHHHH-HHHHHHHHHHHHHTTSTTCCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 6069999999999999999999999999998129999999999999999-999999999999998085399999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Q ss_conf 99999999984210014652345555310101344578765557999999999999999999999999986409899899
Q gi|254780323|r 104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATR 183 (491)
Q Consensus 104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKR 183 (491)
+....+.......... .... +....... ........... +......-..++..+
T Consensus 85 ~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~----------~~~~~~~~~~~---~~~~~~~~~~~~~~~ 138 (417)
T 2cfq_A 85 VMFAPFFIFIFGPLLQ----------YNIL---VGSIVGGI----------YLGFCFNAGAP---AVEAFIEKVSRRSNF 138 (417)
T ss_dssp SCHHHHHHHTHHHHHH----------TTCC---HHHHGGGS----------STTHHHHTTHH---HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHH----------HHHH---HHHHHHHC----------CCCCCCHHHHH---HHHCCCHHHHHHHHH
T ss_conf 9999999875405889----------9999---99998750----------00133226666---541010000167899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 99999989999999988999999630123224899999999999999999999984024522332000011234578889
Q gi|254780323|r 184 FYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLSVL 263 (491)
Q Consensus 184 lf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (491)
..+....+++.+..+|+.....+....+.................. .......++..+.++ +++++.+....
T Consensus 139 ~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~ 210 (417)
T 2cfq_A 139 EFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLL-------FFAKTDAPSSATVAN-AVGANHSAFSL 210 (417)
T ss_dssp CHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHS-------CSSCCCCSCSSCSSS-SSSSCCCCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH-------HHHCCCCCCHHHHHH-HHHHHCCCCCC
T ss_conf 9999999999999986555023100033027999999999987788-------740123210011211-22210222000
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999830967999999999999999999999999999832998999999999999999999999999789999731678
Q gi|254780323|r 264 ESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFT 343 (491)
Q Consensus 264 ~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~ 343 (491)
...+...+++................................+........+...........+...+.+++.+|.+.+.
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 290 (417)
T 2cfq_A 211 KLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKN 290 (417)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHH
T ss_conf 10123334556788999999999999998777778888886301111101101344321001122222454310000378
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHEECCHHHHHH
Q ss_conf 999999999999999999984101234666787300207999999999999999876344646-6877752269767365
Q gi|254780323|r 344 SAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDS-TKEMAFIPLDDEFRTK 422 (491)
Q Consensus 344 ~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p-~~E~l~~pl~~~~R~k 422 (491)
...+.-.+..+ .......... . . ......+. -..-++...| ....+-.-.|++.|.+
T Consensus 291 ~~~~~~~~~~~---~~~~~~~~~~-~-------------~-~~~~~~~l----~g~~~~~~~~~~~~~~~~~~p~~~~~~ 348 (417)
T 2cfq_A 291 ALLLAGTIMSV---RIIGSSFATS-A-------------L-EVVILKTL----HMFEVPFLLVGCFKYITSQFEVRFSAT 348 (417)
T ss_dssp HHHHHHHHHHH---HHHHHTTCCS-H-------------H-HHHHHTTH----HHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHH---HHHHHHCCCC-H-------------H-HHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 99999999999---9988622466-9-------------9-99999999----999999999999999999879728999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 777678887646677799999999998
Q gi|254780323|r 423 GKAVVDVIGGRMAKSGGAVIQSFIFML 449 (491)
Q Consensus 423 ~K~~iD~~~~r~Gk~~gs~~~~~l~~~ 449 (491)
+-+....+...+|...|+.+...+...
T Consensus 349 ~~~~~~~~~~~~g~~ig~~~~G~l~~~ 375 (417)
T 2cfq_A 349 IYLVCFCFFKQLAMIFMSVLAGNMYES 375 (417)
T ss_dssp HHHHHHTTTHHHHHHHHTHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=98.92 E-value=9.6e-06 Score=61.38 Aligned_cols=296 Identities=9% Similarity=-0.040 Sum_probs=159.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 1232799999999999999999999877886512-485446799999999999999999999996338999999999999
Q gi|254780323|r 24 SEAKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPH-MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFF 102 (491)
Q Consensus 24 ~E~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~-~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f 102 (491)
.-...+......||+..+.+...-++-..+--+- .+.+...++.. .-.....+..+..+++.+|++||+.+......+
T Consensus 23 ~~~~~~~~~~~~ff~~g~~~~~~~~~~p~~~~~~~ls~~~~gli~s-~~~~g~~i~~~~~G~l~Dr~Grk~~l~~~~~~~ 101 (438)
T 3o7q_A 23 SYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQS-AFYFGYFIIPIPAGILMKKLSYKAGIITGLFLY 101 (438)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHH-HHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 6999999999999999999998999999999993949999999999-999999999999999999828339899999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Q ss_conf 99999999998421001465234555531010134457876555799999999999999999999999998640989989
Q gi|254780323|r 103 VSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEAT 182 (491)
Q Consensus 103 ~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaK 182 (491)
.+..+++++.-.. .+.|.....-.....-...... .-..+.+|.+.+++..
T Consensus 102 ~ig~~l~~~a~~~----------------------------~~~~~~l~~r~~~G~~~g~~~~-~~~~~i~~~~~~~~r~ 152 (438)
T 3o7q_A 102 ALGAALFWPAAEI----------------------------MNYTLFLVGLFIIAAGLGCLET-AANPFVTVLGPESSGH 152 (438)
T ss_dssp HHHHHHHHHHHHT----------------------------TCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHSSCSTTHH
T ss_pred HHHHHHHHHHHCC----------------------------CCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHH
T ss_conf 8898876641010----------------------------1099999999999713123788-9999999866767888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH--H-------------HHHHHCCCCCCCC
Q ss_conf 999999989999999988999999630123224899999999999999999--9-------------9998402452233
Q gi|254780323|r 183 RFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVY--R-------------WMNLYVLTDPQQY 247 (491)
Q Consensus 183 Rlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~--~-------------~~~~~~~~~~~~~ 247 (491)
|..++...+.++|.++++.....+....+...................... . ..........+..
T Consensus 153 ~~~~~~~~~~~~G~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (438)
T 3o7q_A 153 FRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFP 232 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988878610232015578774165178999999999999999999862010000012357788999998874100
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2000011234578889999998309679999999999999999999999999998329-989999999999999999999
Q gi|254780323|r 248 SPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYP-TQNSYAQFMGQFIQWTGIVTI 326 (491)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~-~~~~~~af~g~~~~~v~i~ti 326 (491)
..+..+++++++....+..+...++|...........+................+... .+.+..... .........
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 309 (438)
T 3o7q_A 233 ALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANY---LTGTMVCFF 309 (438)
T ss_dssp CCTTTCCCCSSTTSHHHHHHHHTTCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH---HHHHHHHHH
T ss_conf 11000012320023210355655420157889999999999999988778999996147406778877---788988877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999789999731678999999999
Q gi|254780323|r 327 VFMILGSNILKSFRWFTSAIITPLMI 352 (491)
Q Consensus 327 i~qll~~~ll~r~G~~~~l~i~Pi~~ 352 (491)
.......+..+|.+.+....+..+..
T Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (438)
T 3o7q_A 310 IGRFTGTWLISRFAPHKVLAAYALIA 335 (438)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 76788777663143057799999999
No 4
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=98.73 E-value=1.6e-06 Score=67.53 Aligned_cols=148 Identities=9% Similarity=-0.015 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 999999999999999999877886512-4854467999999999999999999999963389999999999999999999
Q gi|254780323|r 31 PMTLMMFLVLFNFSTLRPIKDSLVVPH-MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIF 109 (491)
Q Consensus 31 ~~~~~~F~i~~~y~~lr~~rd~l~~~~-~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f 109 (491)
++.+..++-..+.++.-|.=..+.-+- .+++.+.++-.... ....+..+..+++.||++||+++..-...+.+...+.
T Consensus 4 ll~~~~~~~~~~~~~~~p~lp~i~~~l~~s~~~~g~~~s~~~-l~~~i~~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~ 82 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYL-LTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVA 82 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHH-HHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999997929999999999999-9999999999999998096999999999999999999
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 99984210014652345555310101344578765557999999999999999999999999986409899899999999
Q gi|254780323|r 110 AFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFG 189 (491)
Q Consensus 110 ~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~ 189 (491)
++.- +.|..........+....... .-.++..|.++++|..|..+...
T Consensus 83 ~~~~-------------------------------~~~~l~~~r~l~G~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~ 130 (375)
T 2gfp_A 83 VTTS-------------------------------SLTVLIAASAMQGMGTGVGGV-MARTLPRDLYERTQLRHANSLLN 130 (375)
T ss_dssp HHHH-------------------------------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHTSSCCSHHHHHH
T ss_pred HHCC-------------------------------CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9858-------------------------------788999999999841113578-88876545566777751231432
Q ss_pred HHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 8999999998899999963012
Q gi|254780323|r 190 LVGNVGLIFAGGIVKTFSKLTN 211 (491)
Q Consensus 190 ~g~~ig~i~gg~~~~~l~~~~~ 211 (491)
.+.++|.++|+.....+.+..+
T Consensus 131 ~~~~~g~~ig~~~~~~l~~~~~ 152 (375)
T 2gfp_A 131 MGILVSPLLAPLIGGLLDTMWN 152 (375)
T ss_dssp HHHHHHHHHHHHHHHHSSCHHH
T ss_pred HCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1123555446500221000000
No 5
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A
Probab=97.60 E-value=0.0055 Score=39.58 Aligned_cols=141 Identities=11% Similarity=0.022 Sum_probs=70.4
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 86409899899999999899999999889999996301232248999999999999999999999840245223320000
Q gi|254780323|r 173 NRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRG 252 (491)
Q Consensus 173 n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 252 (491)
.............+........+...+........++.+......... ...++..... .
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~~~~~~~~-----~-------------- 307 (417)
T 2cfq_A 249 SFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG--TIMSVRIIGS-----S-------------- 307 (417)
T ss_dssp HTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHH-----T--------------
T ss_pred HHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHH--HHHHHHHHHH-----H--------------
T ss_conf 886301111101101344321001122222454310000378999999--9999999886-----2--------------
Q ss_pred CCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 1123457888999999830967999999999999999999999999999832998999999999999999-999999999
Q gi|254780323|r 253 SVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIVFMIL 331 (491)
Q Consensus 253 ~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii~qll 331 (491)
...+++.. ....++.++............+.+..| ++++.+.+|......+ +-..+...+
T Consensus 308 ----------------~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~g~~ig~~~ 368 (417)
T 2cfq_A 308 ----------------FATSALEV--VILKTLHMFEVPFLLVGCFKYITSQFE-VRFSATIYLVCFCFFKQLAMIFMSVL 368 (417)
T ss_dssp ----------------TCCSHHHH--HHHTTHHHHHHHHHHHHHHHHHHHHSC-HHHHHHHHHHHHTTTHHHHHHHHTHH
T ss_pred ----------------CCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ----------------24669999--999999999999999999999999879-72899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7899997316789999999999
Q gi|254780323|r 332 GSNILKSFRWFTSAIITPLMIL 353 (491)
Q Consensus 332 ~~~ll~r~G~~~~l~i~Pi~~l 353 (491)
.+.+.+++|+..+..+.-.+.+
T Consensus 369 ~G~l~~~~g~~~~~~~~~~~~~ 390 (417)
T 2cfq_A 369 AGNMYESIGFQGAYLVLGLVAL 390 (417)
T ss_dssp HHTHHHHSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHH
T ss_conf 9999999798999999999999
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=97.41 E-value=0.0092 Score=37.83 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=32.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 226976736577767888764667779999999999830000233379999999999999999999970899998534
Q gi|254780323|r 413 IPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFMLFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISK 490 (491)
Q Consensus 413 ~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~~L~~~y~~~i~~ 490 (491)
-..|++.|..+-+....+.+=.|-..+..+...+.... +............+...........+-+|+.+|..+|
T Consensus 373 ~~~p~~~~g~~~g~~~~~~~~~g~~~~~~i~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 447 (451)
T 1pw4_A 373 ELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF---GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 447 (451)
T ss_dssp HTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 87799799999999999999999999999999999986---8699999999999999999999998202616678876
No 7
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=93.62 E-value=0.33 Score=25.54 Aligned_cols=27 Identities=15% Similarity=0.128 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 799999999999999999999999998640989
Q gi|254780323|r 147 WSFALFYVFAELWGAVMINLMFWQFANRITKTE 179 (491)
Q Consensus 147 w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~ 179 (491)
|+.+.|++ +..+.+ .+++...|.+..|
T Consensus 65 li~s~~~~-----g~~i~~-~~~G~l~Dr~Grk 91 (438)
T 3o7q_A 65 LIQSAFYF-----GYFIIP-IPAGILMKKLSYK 91 (438)
T ss_dssp HHHHHHHH-----HHHTTH-HHHHHHHHHSCHH
T ss_pred HHHHHHHH-----HHHHHH-HHHHHHHHHCCCH
T ss_conf 99999999-----999999-9999999982833
No 8
>1kf6_D Fumarate reductase 13 kDa hydrophobic protein; respiration, fumarate reductace, succinate dehydrogenase, complex II, quinol, quinone; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: f.21.2.2 PDB: 1kfy_D* 1l0v_D* 2b76_D* 3cir_D*
Probab=29.45 E-value=16 Score=12.34 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899899999999899999999889999996
Q gi|254780323|r 178 TEEATRFYATFGLVGNVGLIFAGGIVKTFS 207 (491)
Q Consensus 178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~ 207 (491)
..+..-+-+++++||+.++++.+.++-.+.
T Consensus 8 RS~EPi~WgLFgAGG~~~Al~~PvlIll~g 37 (119)
T 1kf6_D 8 RSDEPVFWGLFGAGGMWSAIIAPVMILLVG 37 (119)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCHHEEECCCCHHHHHHHHHHHHHHH
T ss_conf 778985131144660279999889999999
No 9
>1pc3_A Phosphate-binding protein 1; phosphate transport receptor, immonodominant antigen, ION-dipole interactions, electrostatics; 2.16A {Mycobacterium tuberculosis H37RV} SCOP: c.94.1.1
Probab=18.36 E-value=25 Score=10.79 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.9
Q ss_pred HHHHHHHEECCHHHHHHHHHHHHHH
Q ss_conf 6687775226976736577767888
Q gi|254780323|r 406 STKEMAFIPLDDEFRTKGKAVVDVI 430 (491)
Q Consensus 406 p~~E~l~~pl~~~~R~k~K~~iD~~ 430 (491)
..+|.=|.|||++.|.++++.+|.+
T Consensus 324 i~~~~GyvPLp~~~~~~~~~~~~~i 348 (350)
T 1pc3_A 324 FLDQVHFQPLPPAVVKLSDALIATI 348 (350)
T ss_dssp HHHHHTCBCCCHHHHHHHHHHHTTC
T ss_pred HHHHCCCEECCHHHHHHHHHHHHHH
T ss_conf 8886897669999999999999860
No 10
>3p4i_A Acetate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis, no pathogenic species; 2.35A {Mycobacterium avium}
Probab=15.18 E-value=29 Score=10.23 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 65777678887646677799999
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVIQ 443 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~~ 443 (491)
.++|-++|.+++|+.|-+|+...
T Consensus 289 ~~A~la~d~~~y~i~K~IGa~aa 311 (392)
T 3p4i_A 289 GAAQLAYSVFTHRLRKYIGAYLA 311 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 88999999999999999999999
Done!