HHSEARCH alignment of GI: 254780323 and SCOP domain: d1pv7a_

Alignment
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.42  E-value=2.1e-08  Score=80.43  Aligned_cols=366  Identities=11%  Similarity=0.103  Sum_probs=177.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf             32799999999999999999999877886512--4854467999999999999999999999963389999999999999
Q gi|254780323|r   26 AKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPH--MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFV  103 (491)
Q Consensus        26 ~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~--~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~  103 (491)
                      -|.++.+...+|+..+++...-|.--....+.  .+++.+-.+.....+ ...+..+..+++.||++|||..........
T Consensus         6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l-~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~   84 (417)
T d1pv7a_           6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWIITGML   84 (417)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf             7158999999999999999999999999998029999999999999999-999999999999998175399999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHH
Q ss_conf             99999999984210014652345555310101344578765557999999999999999--9999999999864098998
Q gi|254780323|r  104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAV--MINLMFWQFANRITKTEEA  181 (491)
Q Consensus       104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~--vis~~FW~~~n~~f~~~qa  181 (491)
                      +....+..........           .               +......+.....+..  ...........+  ..++.
T Consensus        85 ~~~~~~~~~~~~~~~~-----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  136 (417)
T d1pv7a_          85 VMFAPFFIFIFGPLLQ-----------Y---------------NILVGSIVGGIYLGFCFNAGAPAVEAFIEK--VSRRS  136 (417)
T ss_dssp             HTHHHHHHHTHHHHHH-----------T---------------TCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--HHHHH
T ss_pred             HHHHHHHHHHHHHHHH-----------H---------------HHHHHHHHHHHCCCCCCCCHHHCCCCCCCC--HHHHH
T ss_conf             9999988763014678-----------8---------------899998776501222332022112223441--13456


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99999999899999999889999996301232248999999999999999999999840245223320000112345788
Q gi|254780323|r  182 TRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLS  261 (491)
Q Consensus       182 KRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (491)
                      .+..+....+.+.+.++++.....+......................       ........+...+.+ .+++++.+..
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~  208 (417)
T d1pv7a_         137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL-------LFFAKTDAPSSATVA-NAVGANHSAF  208 (417)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHSSCCCSCSSSCSS-HHHHSCCCCC
T ss_pred             HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHCCCCCCHHHH-HHHHHHCCCC
T ss_conf             77778876540355445530001233456653211003489999999-------999842332102322-0023202332


Q ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             89999998309679999999999999999999999999998329989999999999999999999999997899997316
Q gi|254780323|r  262 VLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRW  341 (491)
Q Consensus       262 ~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~  341 (491)
                      .....+...+.+....+...........................+...-....+.......+...+...+.+++.+|.|.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~  288 (417)
T d1pv7a_         209 SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG  288 (417)
T ss_dssp             CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf             22211001222222110246688999887641222222222233332100000112222233222210244442001222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHEECCHHHH
Q ss_conf             78999999999999999999984101234666787300207999999999999999876344646-68777522697673
Q gi|254780323|r  342 FTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDS-TKEMAFIPLDDEFR  420 (491)
Q Consensus       342 ~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p-~~E~l~~pl~~~~R  420 (491)
                      +....+.-....+   ..........              .. ......+.    -..-++...| ....+-.-.|++.|
T Consensus       289 ~~~~~~~~~~~~~---~~~~~~~~~~--------------~~-~~~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~~  346 (417)
T d1pv7a_         289 KNALLLAGTIMSV---RIIGSSFATS--------------AL-EVVILKTL----HMFEVPFLLVGCFKYITSQFEVRFS  346 (417)
T ss_dssp             HHHHHHHHHHHHH---HHHHHHTCCC--------------HH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred             CCCHHHHHHHHHH---HHHCCCCCCC--------------CC-HHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf             1000365788888---6520113322--------------11-14578999----9999999999999999998798489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             657776788876466777999999999983
Q gi|254780323|r  421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLF  450 (491)
Q Consensus       421 ~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~  450 (491)
                      .++.+..-.+...+|...|+.+...+...+
T Consensus       347 ~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~  376 (417)
T d1pv7a_         347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESI  376 (417)
T ss_dssp             HHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             999999999999999999999999999997


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]