HHSEARCH alignment of GI: 254780323 and SCOP domain: d1pw4a_

Alignment
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.55  E-value=4.3e-09  Score=85.90  Aligned_cols=378  Identities=7%  Similarity=-0.039  Sum_probs=176.3

Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHH
Q ss_conf             85446799999999999999999999996338999999999999999999999984210014652345555310101344
Q gi|254780323|r   59 GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLK  138 (491)
Q Consensus        59 g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~  138 (491)
                      +.+.+.++.....+ ...+..+..+++.+|++||+.+........+..+++++.-....                     
T Consensus        57 s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~---------------------  114 (447)
T d1pw4a_          57 SRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS---------------------  114 (447)
T ss_dssp             CSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS---------------------
T ss_pred             CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH---------------------
T ss_conf             99999999999999-99999999999999808659999999999999865045640333---------------------


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf             57876555799999999999999999999999998640989989999999989999999988999999630123224899
Q gi|254780323|r  139 WFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYS  218 (491)
Q Consensus       139 ~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~  218 (491)
                            +.|.....-....+....... .-.++..|.++++|-.+..++.+.+.++|.++++..........+.....+.
T Consensus       115 ------~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~  187 (447)
T d1pw4a_         115 ------SIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY  187 (447)
T ss_dssp             ------SSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred             ------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf             ------078999999999875444555-7888999999862012333333234422456530024667654211221100


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             99999999999999999998402452233----------20000112345788899999983096799999999999999
Q gi|254780323|r  219 MLTLILSSILLMAVYRWMNLYVLTDPQQY----------SPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTA  288 (491)
Q Consensus       219 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~  288 (491)
                      ..........+...   ......+++...          .....++++++........+.+.++|.+..+....++....
T Consensus       188 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (447)
T d1pw4a_         188 MPAFCAILVALFAF---AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL  264 (447)
T ss_dssp             HHHHHHHHHHHHHH---HHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHCCCCHHHCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf             11245899999999---863345000133214666640011000000011221467899997172377888776554321


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999998329989999999999999999999999997899997316789999999999999999999841012
Q gi|254780323|r  289 INLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDA  368 (491)
Q Consensus       289 ~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~  368 (491)
                      ........-....+....+.+.....   ....++..++..++.+++.+|++-+......-...................
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  341 (447)
T d1pw4a_         265 RYGILDWSPTYLKEVKHFALDKSSWA---YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG  341 (447)
T ss_dssp             HHHHHHHHHHHBTTBSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred             HHCCHHHHHHHCCCCCCCCCCHHHHH---HHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             00100233210122322222202454---310112455554443111000123343332101577888899998750345


Q ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             34666787300207999999999999999876344646687775226976736577767888764667779999999999
Q gi|254780323|r  369 LLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFM  448 (491)
Q Consensus       369 ~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~  448 (491)
                                 .+..  .....+   ..-........+.....-.-.|++.|..+.++...+.+-.|-..+..+...+..
T Consensus       342 -----------~~~~--~~~~~~---~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~  405 (447)
T d1pw4a_         342 -----------NPTV--DMICMI---VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD  405 (447)
T ss_dssp             -----------CHHH--HHHHHH---HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             -----------2899--999999---999999999999999999876997999999999999999999999999999998


Q ss_pred             HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             830000233379999999999999999999970899998534
Q gi|254780323|r  449 LFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISK  490 (491)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~~L~~~y~~~i~~  490 (491)
                      .+   +............+..+..+......-.|+.++..+|
T Consensus       406 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e  444 (447)
T d1pw4a_         406 FF---GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE  444 (447)
T ss_dssp             SS---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred             HH---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf             75---8699999999999999999999998213647878873


SCOP domain information

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]