Query gi|254780323|ref|YP_003064736.1| ATP/ADP translocase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 491
No_of_seqs 146 out of 477
Neff 8.3
Searched_HMMs 13730
Date Wed Jun 1 04:12:11 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780323.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 99.5 4.3E-09 3.2E-13 85.9 40.4 378 59-490 57-444 (447)
2 d1pv7a_ f.38.1.2 (A:) Lactose 99.4 2.1E-08 1.6E-12 80.4 33.1 366 26-450 6-376 (417)
3 d1pv7a_ f.38.1.2 (A:) Lactose 97.5 0.0038 2.7E-07 39.0 17.6 143 174-356 250-393 (417)
4 d1pw4a_ f.38.1.1 (A:) Glycerol 96.9 0.015 1.1E-06 34.3 22.7 137 175-350 281-418 (447)
5 d1kf6d_ f.21.2.2 (D:) Fumarate 25.2 11 0.00077 11.8 1.9 30 178-207 8-37 (119)
6 d1pc3a_ c.94.1.1 (A:) Phosphat 15.5 16 0.0012 10.3 1.5 25 406-430 307-331 (333)
7 d1g99a2 c.55.1.2 (A:198-398) A 15.1 17 0.0012 10.2 3.3 22 421-442 99-120 (201)
8 d2axti1 f.23.37.1 (I:1-35) Pho 14.2 18 0.0013 10.1 3.5 20 93-112 5-24 (35)
9 d2gnoa1 a.80.1.1 (A:209-306) g 13.9 18 0.0013 10.0 0.1 39 307-345 18-61 (98)
10 d2e1za2 c.55.1.2 (A:193-397) P 13.5 19 0.0014 9.8 3.0 22 421-442 99-120 (205)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=99.55 E-value=4.3e-09 Score=85.90 Aligned_cols=378 Identities=7% Similarity=-0.039 Sum_probs=176.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHH
Q ss_conf 85446799999999999999999999996338999999999999999999999984210014652345555310101344
Q gi|254780323|r 59 GAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFVSFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLK 138 (491)
Q Consensus 59 g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~ 138 (491)
+.+.+.++.....+ ...+..+..+++.+|++||+.+........+..+++++.-....
T Consensus 57 s~~~~g~~~s~~~~-~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 114 (447)
T d1pw4a_ 57 SRGDLGFALSGISI-AYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATS--------------------- 114 (447)
T ss_dssp CSSCHHHHHHHHHH-HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHS---------------------
T ss_pred CHHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHH---------------------
T ss_conf 99999999999999-99999999999999808659999999999999865045640333---------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 57876555799999999999999999999999998640989989999999989999999988999999630123224899
Q gi|254780323|r 139 WFIYLAGKWSFALFYVFAELWGAVMINLMFWQFANRITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYS 218 (491)
Q Consensus 139 ~~~~~~~~w~~~~fYv~~e~~~~~vis~~FW~~~n~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~ 218 (491)
+.|.....-....+....... .-.++..|.++++|-.+..++.+.+.++|.++++..........+.....+.
T Consensus 115 ------~~~~~~~~~~~~g~~~~~~~~-~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~ 187 (447)
T d1pw4a_ 115 ------SIAVMFVLLFLCGWFQGMGWP-PCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALY 187 (447)
T ss_dssp ------SSSHHHHHHHHHHHHHHHTHH-HHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCH
T ss_conf ------078999999999875444555-7888999999862012333333234422456530024667654211221100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCC----------CCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999998402452233----------20000112345788899999983096799999999999999
Q gi|254780323|r 219 MLTLILSSILLMAVYRWMNLYVLTDPQQY----------SPKRGSVKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTA 288 (491)
Q Consensus 219 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~ 288 (491)
..........+... ......+++... .....++++++........+.+.++|.+..+....++....
T Consensus 188 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (447)
T d1pw4a_ 188 MPAFCAILVALFAF---AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIFMQYVLPNKLLWYIAIANVFVYLL 264 (447)
T ss_dssp HHHHHHHHHHHHHH---HHCCCSSTTTCCCSCTTTCCC-------------CCTHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHCCCCHHHCCCCHHHHHHHHCCCCHHHCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 11245899999999---863345000133214666640011000000011221467899997172377888776554321
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999998329989999999999999999999999997899997316789999999999999999999841012
Q gi|254780323|r 289 INLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRWFTSAIITPLMILITGGGFFVFVIFEDA 368 (491)
Q Consensus 289 ~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~~~~l~i~Pi~~li~~~~ff~~~~~~~~ 368 (491)
........-....+....+.+..... ....++..++..++.+++.+|++-+......-...................
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (447)
T d1pw4a_ 265 RYGILDWSPTYLKEVKHFALDKSSWA---YFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAG 341 (447)
T ss_dssp HHHHHHHHHHHBTTBSCCCHHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTT
T ss_pred HHCCHHHHHHHCCCCCCCCCCHHHHH---HHCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 00100233210122322222202454---310112455554443111000123343332101577888899998750345
Q ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 34666787300207999999999999999876344646687775226976736577767888764667779999999999
Q gi|254780323|r 369 LLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDSTKEMAFIPLDDEFRTKGKAVVDVIGGRMAKSGGAVIQSFIFM 448 (491)
Q Consensus 369 ~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p~~E~l~~pl~~~~R~k~K~~iD~~~~r~Gk~~gs~~~~~l~~ 448 (491)
.+.. .....+ ..-........+.....-.-.|++.|..+.++...+.+-.|-..+..+...+..
T Consensus 342 -----------~~~~--~~~~~~---~~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~ 405 (447)
T d1pw4a_ 342 -----------NPTV--DMICMI---VIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVD 405 (447)
T ss_dssp -----------CHHH--HHHHHH---HHHHHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CHHH--HHHHHH---HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -----------2899--999999---999999999999999999876997999999999999999999999999999998
Q ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 830000233379999999999999999999970899998534
Q gi|254780323|r 449 LFPMATFSSIVPYLAVFFLCLMFIWIYVVNQLSKEYTQLISK 490 (491)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~i~i~~~Wi~~~~~L~~~y~~~i~~ 490 (491)
.+ +............+..+..+......-.|+.++..+|
T Consensus 406 ~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~e 444 (447)
T d1pw4a_ 406 FF---GWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQE 444 (447)
T ss_dssp SS---CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGG
T ss_pred HH---CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 75---8699999999999999999999998213647878873
No 2
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=99.42 E-value=2.1e-08 Score=80.43 Aligned_cols=366 Identities=11% Similarity=0.103 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 32799999999999999999999877886512--4854467999999999999999999999963389999999999999
Q gi|254780323|r 26 AKKFIPMTLMMFLVLFNFSTLRPIKDSLVVPH--MGAEIISFVKLWCVFPSAILFTILYMKLSNILETEKLFYVVVSFFV 103 (491)
Q Consensus 26 ~~~~~~~~~~~F~i~~~y~~lr~~rd~l~~~~--~g~e~lp~l~~~~~l~~s~~~~~~y~~l~~~~~~~~l~~~~~~~f~ 103 (491)
-|.++.+...+|+..+++...-|.--....+. .+++.+-.+.....+ ...+..+..+++.||++|||..........
T Consensus 6 n~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l-~~~i~~~~~G~l~Dr~grr~~l~~~~~~~~ 84 (417)
T d1pv7a_ 6 NTNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISL-FSLLFQPLFGLLSDKLGLRKYLLWIITGML 84 (417)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHHTHHHHHHHHHHHTTCTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 7158999999999999999999999999998029999999999999999-999999999999998175399999999999
Q ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHCCHHHH
Q ss_conf 99999999984210014652345555310101344578765557999999999999999--9999999999864098998
Q gi|254780323|r 104 SFFAIFAFLLYPYRDFLHPSPESIRALASSWPYLKWFIYLAGKWSFALFYVFAELWGAV--MINLMFWQFANRITKTEEA 181 (491)
Q Consensus 104 ~~~~~f~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~fYv~~e~~~~~--vis~~FW~~~n~~f~~~qa 181 (491)
+....+.......... . +......+.....+.. ...........+ ..++.
T Consensus 85 ~~~~~~~~~~~~~~~~-----------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 136 (417)
T d1pv7a_ 85 VMFAPFFIFIFGPLLQ-----------Y---------------NILVGSIVGGIYLGFCFNAGAPAVEAFIEK--VSRRS 136 (417)
T ss_dssp HTHHHHHHHTHHHHHH-----------T---------------TCHHHHHHTTTTGGGGGTTHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHH-----------H---------------HHHHHHHHHHHCCCCCCCCHHHCCCCCCCC--HHHHH
T ss_conf 9999988763014678-----------8---------------899998776501222332022112223441--13456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999899999999889999996301232248999999999999999999999840245223320000112345788
Q gi|254780323|r 182 TRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSVKKKLKLS 261 (491)
Q Consensus 182 KRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (491)
.+..+....+.+.+.++++.....+...................... ........+...+.+ .+++++.+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~ 208 (417)
T d1pv7a_ 137 NFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVL-------LFFAKTDAPSSATVA-NAVGANHSAF 208 (417)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH-------HHSSCCCSCSSSCSS-HHHHSCCCCC
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH-------HHHHHCCCCCCHHHH-HHHHHHCCCC
T ss_conf 77778876540355445530001233456653211003489999999-------999842332102322-0023202332
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999998309679999999999999999999999999998329989999999999999999999999997899997316
Q gi|254780323|r 262 VLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIVFMILGSNILKSFRW 341 (491)
Q Consensus 262 ~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii~qll~~~ll~r~G~ 341 (491)
.....+...+.+....+...........................+...-....+.......+...+...+.+++.+|.|.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~ 288 (417)
T d1pv7a_ 209 SLKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGG 288 (417)
T ss_dssp CHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCH
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 22211001222222110246688999887641222222222233332100000112222233222210244442001222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHEECCHHHH
Q ss_conf 78999999999999999999984101234666787300207999999999999999876344646-68777522697673
Q gi|254780323|r 342 FTSAIITPLMILITGGGFFVFVIFEDALLPFTEDVIKLVPLALAVFLGSLQNVLSKATKYTMFDS-TKEMAFIPLDDEFR 420 (491)
Q Consensus 342 ~~~l~i~Pi~~li~~~~ff~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~i~~~~~k~~kYsl~~p-~~E~l~~pl~~~~R 420 (491)
+....+.-....+ .......... .. ......+. -..-++...| ....+-.-.|++.|
T Consensus 289 ~~~~~~~~~~~~~---~~~~~~~~~~--------------~~-~~~~~~~l----~g~~~~~~~~~~~~~~~~~~~~~~~ 346 (417)
T d1pv7a_ 289 KNALLLAGTIMSV---RIIGSSFATS--------------AL-EVVILKTL----HMFEVPFLLVGCFKYITSQFEVRFS 346 (417)
T ss_dssp HHHHHHHHHHHHH---HHHHHHTCCC--------------HH-HHHHHHHH----HHHHHHHHHHHHHHHHHHHSCGGGH
T ss_pred CCCHHHHHHHHHH---HHHCCCCCCC--------------CC-HHHHHHHH----HHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 1000365788888---6520113322--------------11-14578999----9999999999999999998798489
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 657776788876466777999999999983
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVIQSFIFMLF 450 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~~~~l~~~~ 450 (491)
.++.+..-.+...+|...|+.+...+...+
T Consensus 347 ~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~ 376 (417)
T d1pv7a_ 347 ATIYLVCFCFFKQLAMIFMSVLAGNMYESI 376 (417)
T ss_dssp HHHHHHHHTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999999997
No 3
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=97.54 E-value=0.0038 Score=39.01 Aligned_cols=143 Identities=10% Similarity=0.005 Sum_probs=77.7
Q ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 64098998999999998999999998899999963012322489999999999999999999998402452233200001
Q gi|254780323|r 174 RITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGS 253 (491)
Q Consensus 174 ~~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 253 (491)
...+........+.......++.++++.....+.++.+......... ...++.+....
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~~~~~~~~~--~~~~~~~~~~~-------------------- 307 (417)
T d1pv7a_ 250 FFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAG--TIMSVRIIGSS-------------------- 307 (417)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCHHHHHHHHH--HHHHHHHHHHH--------------------
T ss_pred CCCCCCCCHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCHHHHH--HHHHHHHHCCC--------------------
T ss_conf 23333210000011222223322221024444200122210003657--88888652011--------------------
Q ss_pred CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHHHHH
Q ss_conf 123457888999999830967999999999999999999999999999832998999999999999999-9999999997
Q gi|254780323|r 254 VKKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTG-IVTIVFMILG 332 (491)
Q Consensus 254 ~~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~-i~tii~qll~ 332 (491)
...++... ....++.++............+.+..|+ +.+...+|......+ +...+...+.
T Consensus 308 ---------------~~~~~~~~--~~~~~l~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~i~~~~~ 369 (417)
T d1pv7a_ 308 ---------------FATSALEV--VILKTLHMFEVPFLLVGCFKYITSQFEV-RFSATIYLVCFCFFKQLAMIFMSVLA 369 (417)
T ss_dssp ---------------TCCCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSCG-GGHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred ---------------CCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------33221114--5789999999999999999999998798-48999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899997316789999999999999
Q gi|254780323|r 333 SNILKSFRWFTSAIITPLMILITG 356 (491)
Q Consensus 333 ~~ll~r~G~~~~l~i~Pi~~li~~ 356 (491)
+.+.+++|+..+..+.-.+.++..
T Consensus 370 G~l~~~~g~~~~~~~~~~~~~~~~ 393 (417)
T d1pv7a_ 370 GNMYESIGFQGAYLVLGLVALGFT 393 (417)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 999999798999999999999999
No 4
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=96.93 E-value=0.015 Score=34.33 Aligned_cols=137 Identities=12% Similarity=0.062 Sum_probs=69.7
Q ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
Q ss_conf 40989989999999989999999988999999630123224899999999999999999999984024522332000011
Q gi|254780323|r 175 ITKTEEATRFYATFGLVGNVGLIFAGGIVKTFSKLTNELMIYYSMLTLILSSILLMAVYRWMNLYVLTDPQQYSPKRGSV 254 (491)
Q Consensus 175 ~f~~~qaKRlf~li~~g~~ig~i~gg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 254 (491)
-.+..++.-.......++.+|.+++|.......+. .................... .. .
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------~~-~----------- 338 (447)
T d1pw4a_ 281 HFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRG----NRGATGVFFMTLVTIATIVY------WM-N----------- 338 (447)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT----CHHHHHHHHHHHHHHHHHHT------TS-C-----------
T ss_pred CCCCCHHHHHHHCCHHHHHHHHHHHHHHHHHCCCC----CCCCCCCHHHHHHHHHHHHH------HH-C-----------
T ss_conf 22222024543101124555544431110001233----43332101577888899998------75-0-----------
Q ss_pred CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q ss_conf 2345788899999983096799999999999999999999999999983299899999999999999999999-999978
Q gi|254780323|r 255 KKKLKLSVLESLRMALNSKYLGYLVLLVICYGTAINLVEGPWKEKVRQLYPTQNSYAQFMGQFIQWTGIVTIV-FMILGS 333 (491)
Q Consensus 255 ~~~~~~~~~~~~k~i~~s~yL~~l~~~v~~~~~~~tl~e~~~k~~~~~~~~~~~~~~af~g~~~~~v~i~tii-~qll~~ 333 (491)
...++++..++.... +...............+.+|+ +.+....|..+...++...+ ...+.+
T Consensus 339 --------------~~~~~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~p~-~~~g~~~g~~~~~~~~~g~~~~~~~~g 401 (447)
T d1pw4a_ 339 --------------PAGNPTVDMICMIVI--GFLIYGPVMLIGLHALELAPK-KAAGTAAGFTGLFGYLGGSVAASAIVG 401 (447)
T ss_dssp --------------CTTCHHHHHHHHHHH--HHHHTHHHHHHHHHHHHTSCT-THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf --------------345289999999999--999999999999999987699-799999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99997316789999999
Q gi|254780323|r 334 NILKSFRWFTSAIITPL 350 (491)
Q Consensus 334 ~ll~r~G~~~~l~i~Pi 350 (491)
.+.+..|+.....+.-.
T Consensus 402 ~~~~~~g~~~~~~~~~~ 418 (447)
T d1pw4a_ 402 YTVDFFGWDGGFMVMIG 418 (447)
T ss_dssp HHHHSSCSHHHHHHHHH
T ss_pred HHHHHHCHHHHHHHHHH
T ss_conf 99987586999999999
No 5
>d1kf6d_ f.21.2.2 (D:) Fumarate reductase subunit FrdD {Escherichia coli [TaxId: 562]}
Probab=25.24 E-value=11 Score=11.80 Aligned_cols=30 Identities=20% Similarity=0.295 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 899899999999899999999889999996
Q gi|254780323|r 178 TEEATRFYATFGLVGNVGLIFAGGIVKTFS 207 (491)
Q Consensus 178 ~~qaKRlf~li~~g~~ig~i~gg~~~~~l~ 207 (491)
..+..-+-+++++||..++++.+.++-...
T Consensus 8 RS~EPi~WgLFgAGGm~~A~~~Pvlill~g 37 (119)
T d1kf6d_ 8 RSDEPVFWGLFGAGGMWSAIIAPVMILLVG 37 (119)
T ss_dssp CCSHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred CCCCCCHHEEECCCCHHHHHHHHHHHHHHH
T ss_conf 778983112344772058999889999999
No 6
>d1pc3a_ c.94.1.1 (A:) Phosphate-binding protein {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.53 E-value=16 Score=10.30 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHHHEECCHHHHHHHHHHHHHH
Q ss_conf 6687775226976736577767888
Q gi|254780323|r 406 STKEMAFIPLDDEFRTKGKAVVDVI 430 (491)
Q Consensus 406 p~~E~l~~pl~~~~R~k~K~~iD~~ 430 (491)
..+|.=|.|||++.|.++|+.++.+
T Consensus 307 ~~~~~GyvPLp~~~~~~~~~~~~~i 331 (333)
T d1pc3a_ 307 FLDQVHFQPLPPAVVKLSDALIATI 331 (333)
T ss_dssp HHHHHTCBCCCHHHHHHHHHHHTTC
T ss_pred HHHHCCCEECCHHHHHHHHHHHHHH
T ss_conf 7885898579999999999999861
No 7
>d1g99a2 c.55.1.2 (A:198-398) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}
Probab=15.09 E-value=17 Score=10.22 Aligned_cols=22 Identities=14% Similarity=0.187 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6577767888764667779999
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVI 442 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~ 442 (491)
.++|-++|.+++|+.|-+|+..
T Consensus 99 ~~A~la~d~~~yri~k~Iga~~ 120 (201)
T d1g99a2 99 RKAELALEIFAYKVKKFIGEYS 120 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999999998
No 8
>d2axti1 f.23.37.1 (I:1-35) Photosystem II reaction center protein I, PsbI {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=14.24 E-value=18 Score=10.05 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999999999999999
Q gi|254780323|r 93 KLFYVVVSFFVSFFAIFAFL 112 (491)
Q Consensus 93 ~l~~~~~~~f~~~~~~f~~~ 112 (491)
|++.++...|-+.+++||++
T Consensus 5 Ki~Vy~vV~fFv~lFiFGFL 24 (35)
T d2axti1 5 KITVYIVVTFFVLLFVFGFL 24 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEHHHHHHHHHHHHHHHHC
T ss_conf 87416689999999998630
No 9
>d2gnoa1 a.80.1.1 (A:209-306) gamma subunit {Thermotoga maritima [TaxId: 2336]}
Probab=13.90 E-value=18 Score=9.97 Aligned_cols=39 Identities=23% Similarity=0.309 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999999999-----99999978999973167899
Q gi|254780323|r 307 QNSYAQFMGQFIQWTGIVT-----IVFMILGSNILKSFRWFTSA 345 (491)
Q Consensus 307 ~~~~~af~g~~~~~v~i~t-----ii~qll~~~ll~r~G~~~~l 345 (491)
..|-..||..|++++|.++ ++.|=++.-++..-||-.+-
T Consensus 18 k~e~k~ff~lfdqv~ntitg~daflliq~~~riilhen~we~~~ 61 (98)
T d2gnoa1 18 KVESKEFFALFDQVTNTITGKDAFLLIQRLTRIILHENTWESVE 61 (98)
T ss_dssp HSCGGGHHHHHHHHHHHSCTHHHHHHHHHHHHHHHHTSCCCSHH
T ss_pred HCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCHH
T ss_conf 14831599999998701136058999999889831027643333
No 10
>d2e1za2 c.55.1.2 (A:193-397) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}
Probab=13.50 E-value=19 Score=9.82 Aligned_cols=22 Identities=9% Similarity=0.160 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 6577767888764667779999
Q gi|254780323|r 421 TKGKAVVDVIGGRMAKSGGAVI 442 (491)
Q Consensus 421 ~k~K~~iD~~~~r~Gk~~gs~~ 442 (491)
.++|-++|.+++|+.|.+|+..
T Consensus 99 ~~A~la~d~~~yri~k~Iga~~ 120 (205)
T d2e1za2 99 ERARLAIKTFVHRIARHIAGHA 120 (205)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9899999999999999998777
Done!