Query gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Mon May 30 08:13:45 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780324.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dlb_A YOPT; SR412, X-RAY, NES 20.8 41 0.0017 15.2 2.0 20 5-24 41-60 (80)
2 1v54_L VIIIA, cytochrome C oxi 16.3 52 0.0022 14.6 1.7 35 12-46 4-38 (47)
3 2k21_A Potassium voltage-gated 11.4 89 0.0037 13.4 2.2 36 25-60 51-91 (138)
4 1q90_N Cytochrome B6F complex 8.6 1.1E+02 0.0047 12.8 2.1 15 29-43 9-23 (31)
5 1baz_A ARC repressor; transcri 7.2 40 0.0017 15.3 -1.5 13 15-27 8-20 (53)
6 2h88_D Succinate dehydrogenase 7.2 1.3E+02 0.0055 12.4 2.5 25 28-52 38-62 (103)
7 2drn_C 24-residues peptide fro 6.5 1.4E+02 0.006 12.2 1.2 11 41-51 6-16 (26)
8 1wlq_C CDT1 protein; coiled-co 5.8 1.6E+02 0.0067 12.0 1.8 27 31-57 133-159 (201)
9 2kdp_A Histone deacetylase com 5.7 1.5E+02 0.0064 12.0 0.9 16 38-53 22-37 (71)
10 2qks_A KIR3.1-prokaryotic KIR 5.0 1.2E+02 0.0052 12.6 0.0 29 16-48 37-65 (321)
No 1
>2dlb_A YOPT; SR412, X-RAY, NESG, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, unknown function; 1.20A {Bacillus subtilis} SCOP: b.174.1.1
Probab=20.81 E-value=41 Score=15.23 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=15.9
Q ss_pred CCCEEEEECCCEEEEEECCC
Q ss_conf 10013430474888884264
Q gi|254780324|r 5 VNSTILKAEGSIVNIKWRDA 24 (61)
Q Consensus 5 vnstilkaegsivnikwrda 24 (61)
-.-..|||.||.-|.|..|.
T Consensus 41 kevsflkadgsvenfklsdm 60 (80)
T 2dlb_A 41 KEVSFLKADGSVENFKLSDM 60 (80)
T ss_dssp SEEEEECTTSCEEEEEEEEE
T ss_pred HHHHEEECCCCEECEEECCC
T ss_conf 34320134786212140232
No 2
>1v54_L VIIIA, cytochrome C oxidase polypeptide VIIC; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.6.1 PDB: 1oco_L* 1occ_L* 1ocz_L* 1ocr_L* 1v55_L* 2dyr_L* 2dys_L* 2eij_L* 2eik_L* 2eil_L* 2eim_L* 2ein_L* 2occ_L* 2zxw_L* 3abk_L* 3abl_L* 3abm_L* 3ag1_L* 3ag2_L* 3ag3_L* ...
Probab=16.34 E-value=52 Score=14.64 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=28.0
Q ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 04748888842640168879999986320355799
Q gi|254780324|r 12 AEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIV 46 (61)
Q Consensus 12 aegsivnikwrdanvwllfgvvmvyfsisfssriv 46 (61)
.||.-.|+-..-.|-|-|.....+||...|..-..
T Consensus 4 eeGPGkNlPFsveNk~~Ll~~m~~yfGsgfa~PF~ 38 (47)
T 1v54_L 4 EEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFF 38 (47)
T ss_dssp CCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf 78998878633033899999999998410233166
No 3
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=11.35 E-value=89 Score=13.37 Aligned_cols=36 Identities=17% Similarity=0.300 Sum_probs=23.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHC
Q ss_conf 0168879999986320355799987-----42334667522
Q gi|254780324|r 25 NVWLLFGVVMVYFSISFSSRIVDYV-----DQKHDLYHDYR 60 (61)
Q Consensus 25 nvwllfgvvmvyfsisfssrivdyv-----dqkhdlyhdyr 60 (61)
+-.+..-+||-.|+.---+-++.|+ +.++|-||.|-
T Consensus 51 ~~~lYIL~vmgffgff~~gImlsyiRSKk~E~s~DPyh~YI 91 (138)
T 2k21_A 51 LEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYI 91 (138)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTTS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH
T ss_conf 22679999999999999999998778875015799367775
No 4
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=8.62 E-value=1.1e+02 Score=12.78 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 879999986320355
Q gi|254780324|r 29 LFGVVMVYFSISFSS 43 (61)
Q Consensus 29 lfgvvmvyfsisfss 43 (61)
-.+..|+-||.|.|-
T Consensus 9 ~w~a~~~~fsfslsl 23 (31)
T 1q90_N 9 GWAATCVMFSFSLSL 23 (31)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHEEEEEE
T ss_conf 588897743124788
No 5
>1baz_A ARC repressor; transcription regulation; 1.90A {Enterobacteria phage P22} SCOP: a.43.1.1 PDB: 1bdv_A* 1arq_A 1arr_A 1bdt_A* 1par_A* 1myk_A 1qtg_A 1b28_A 1myl_A
Probab=7.22 E-value=40 Score=15.32 Aligned_cols=13 Identities=23% Similarity=0.478 Sum_probs=7.0
Q ss_pred CEEEEEECCCCHH
Q ss_conf 4888884264016
Q gi|254780324|r 15 SIVNIKWRDANVW 27 (61)
Q Consensus 15 sivnikwrdanvw 27 (61)
.-+|..|.....=
T Consensus 8 pq~nlrwp~~~ld 20 (53)
T 1baz_A 8 PQVNLRWPREVLD 20 (53)
T ss_dssp CEEEEECCHHHHH
T ss_pred CCCCCCCCHHHHH
T ss_conf 4524468589999
No 6
>2h88_D Succinate dehydrogenase cytochrome B, small subunit; complex II, membrane protein, heme protein, iron sulfur protein, oxidoreductase, redox enzyme; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_D* 1yq3_D* 2fbw_D* 2h89_D* 2wqy_D* 1zoy_D* 1zp0_D*
Probab=7.18 E-value=1.3e+02 Score=12.41 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8879999986320355799987423
Q gi|254780324|r 28 LLFGVVMVYFSISFSSRIVDYVDQK 52 (61)
Q Consensus 28 llfgvvmvyfsisfssrivdyvdqk 52 (61)
++.........+.|.+-|.|||..+
T Consensus 38 ll~~~~~~H~~~G~q~vIeDYV~~~ 62 (103)
T 2h88_D 38 SLAAALTLHGHWGLGQVITDYVHGD 62 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSH
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 9999999999857685665314661
No 7
>2drn_C 24-residues peptide from AN A-kinase anchoring protein; AKAP, PKA, signal transduction, 4-helix bundle, helix- loop-helix; NMR {Rattus norvegicus}
Probab=6.51 E-value=1.4e+02 Score=12.21 Aligned_cols=11 Identities=55% Similarity=0.513 Sum_probs=7.8
Q ss_pred HHHHHHHHHHH
Q ss_conf 35579998742
Q gi|254780324|r 41 FSSRIVDYVDQ 51 (61)
Q Consensus 41 fssrivdyvdq 51 (61)
-.|||||-|-.
T Consensus 6 aasrivdavie 16 (26)
T 2drn_C 6 AASRIVDAVIE 16 (26)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 8
>1wlq_C CDT1 protein; coiled-coil; 2.80A {Mus musculus} SCOP: a.4.5.52 PDB: 2zxx_C*
Probab=5.77 E-value=1.6e+02 Score=11.96 Aligned_cols=27 Identities=15% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 999998632035579998742334667
Q gi|254780324|r 31 GVVMVYFSISFSSRIVDYVDQKHDLYH 57 (61)
Q Consensus 31 gvvmvyfsisfssrivdyvdqkhdlyh 57 (61)
...|..---.|.++++|.|...|+-|-
T Consensus 133 ~~~~~~R~~~Fr~~L~~~Vk~~H~~fL 159 (201)
T 1wlq_C 133 ATCLLQRRQVFRQNLVERVKEQHKVFL 159 (201)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999999999999
No 9
>2kdp_A Histone deacetylase complex subunit SAP30; SIN3, zinc finger motif, nucleic acid interaction, nucleus, repressor, transcription; NMR {Homo sapiens}
Probab=5.71 E-value=1.5e+02 Score=12.04 Aligned_cols=16 Identities=44% Similarity=0.573 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3203557999874233
Q gi|254780324|r 38 SISFSSRIVDYVDQKH 53 (61)
Q Consensus 38 sisfssrivdyvdqkh 53 (61)
.-|||-||-.-|.|++
T Consensus 22 nAsysKrIqKTv~qkk 37 (71)
T 2kdp_A 22 NASFSKRIQKSISQKK 37 (71)
T ss_dssp SCCCCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 8137899999998774
No 10
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel, selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}
Probab=5.00 E-value=1.2e+02 Score=12.56 Aligned_cols=29 Identities=17% Similarity=0.686 Sum_probs=17.7
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 888884264016887999998632035579998
Q gi|254780324|r 16 IVNIKWRDANVWLLFGVVMVYFSISFSSRIVDY 48 (61)
Q Consensus 16 ivnikwrdanvwllfgvvmvyfsisfssrivdy 48 (61)
+++++|| |+++-.++.|+.+.+..-..-|
T Consensus 37 lv~~~W~----~~ll~~~~~yl~~~~~Fa~ly~ 65 (321)
T 2qks_A 37 LVDLKWR----WFFVSLAVLFLLLNTAFATLYM 65 (321)
T ss_dssp HHHSCHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8038599----9999999999999999999998
Done!