Query         gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 61
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 13730
Date          Wed Jun  1 02:21:55 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780324.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d2qqra2 b.34.9.1 (A:956-1011)   23.0      14  0.0011   16.4   1.2   17   11-27      2-18  (56)
  2 d2dlba1 b.174.1.1 (A:2002-2071  20.7      24  0.0017   15.2   2.0   20    5-24     40-59  (70)
  3 d1v54l_ f.23.6.1 (L:) Mitochon  19.2      23  0.0017   15.3   1.7   35   12-46      3-37  (46)
  4 d1q90n_ f.23.27.1 (N:) PetN su  10.6      54   0.004   13.2   2.1   16   28-43      8-23  (31)
  5 d1wlqc_ a.4.5.52 (C:) DNA repl   7.8      71  0.0052   12.6   1.8   28   31-58    122-149 (187)
  6 d1tu7a2 c.47.1.5 (A:1-77) Clas   7.1      55   0.004   13.2   0.5   19   37-55     58-76  (77)
  7 d3cx5e1 b.33.1.1 (E:87-215) IS   6.5      82   0.006   12.2   1.3   18   12-29     16-33  (129)
  8 d2c4ja2 c.47.1.5 (A:2-85) Clas   6.4      70  0.0051   12.6   0.7   18   37-54     67-84  (84)
  9 d1r7ma1 d.95.2.1 (A:3-120) DNA   6.1      42  0.0031   13.9  -0.6   25   36-60     53-77  (118)
 10 d1okta2 c.47.1.5 (A:1-85) Pf G   5.3      79  0.0057   12.3   0.4   19   37-55     67-85  (85)

No 1  
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=23.04  E-value=14  Score=16.44  Aligned_cols=17  Identities=41%  Similarity=1.030  Sum_probs=13.9

Q ss_pred             EECCCEEEEEECCCCHH
Q ss_conf             30474888884264016
Q gi|254780324|r   11 KAEGSIVNIKWRDANVW   27 (61)
Q Consensus        11 kaegsivnikwrdanvw   27 (61)
                      -++|..|..+|.|.++.
T Consensus         2 P~~Ge~V~VrW~DG~~y   18 (56)
T d2qqra2           2 PAEGEVVQVRWTDGQVY   18 (56)
T ss_dssp             CCTTCEEEEECTTSCEE
T ss_pred             CCCCCEEEEECCCCCEE
T ss_conf             98785899983788798


No 2  
>d2dlba1 b.174.1.1 (A:2002-2071) Uncharacterized protein YopT {Bacillus subtilis [TaxId: 1423]}
Probab=20.71  E-value=24  Score=15.21  Aligned_cols=20  Identities=40%  Similarity=0.569  Sum_probs=15.8

Q ss_pred             CCCEEEEECCCEEEEEECCC
Q ss_conf             10013430474888884264
Q gi|254780324|r    5 VNSTILKAEGSIVNIKWRDA   24 (61)
Q Consensus         5 vnstilkaegsivnikwrda   24 (61)
                      -.-..|||.||.-|.|..|.
T Consensus        40 kevsflkadgsvenfklsdm   59 (70)
T d2dlba1          40 KEVSFLKADGSVENFKLSDM   59 (70)
T ss_dssp             SEEEEECTTSCEEEEEEEEE
T ss_pred             HHHHEEECCCCEECEEECCC
T ss_conf             34320133786212130231


No 3  
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.19  E-value=23  Score=15.28  Aligned_cols=35  Identities=26%  Similarity=0.549  Sum_probs=27.7

Q ss_pred             ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             04748888842640168879999986320355799
Q gi|254780324|r   12 AEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIV   46 (61)
Q Consensus        12 aegsivnikwrdanvwllfgvvmvyfsisfssriv   46 (61)
                      .||.=.|....-.|-|-|.....+||...|+.-.+
T Consensus         3 ~eGPG~NLPFsv~Nk~rLla~m~~~fGsgfa~PF~   37 (46)
T d1v54l_           3 EEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFF   37 (46)
T ss_dssp             CCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH
T ss_conf             88998878732101899999999998021344299


No 4  
>d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=10.60  E-value=54  Score=13.22  Aligned_cols=16  Identities=31%  Similarity=0.405  Sum_probs=10.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             8879999986320355
Q gi|254780324|r   28 LLFGVVMVYFSISFSS   43 (61)
Q Consensus        28 llfgvvmvyfsisfss   43 (61)
                      +-.+..|+-||.|.|-
T Consensus         8 ~awaa~~atfsfslsl   23 (31)
T d1q90n_           8 IGWAATCVMFSFSLSL   23 (31)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHEEEEEE
T ss_conf             3798898742225889


No 5  
>d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.83  E-value=71  Score=12.58  Aligned_cols=28  Identities=14%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             9999986320355799987423346675
Q gi|254780324|r   31 GVVMVYFSISFSSRIVDYVDQKHDLYHD   58 (61)
Q Consensus        31 gvvmvyfsisfssrivdyvdqkhdlyhd   58 (61)
                      ..++..---.|.++++|.|...|+-|-+
T Consensus       122 ~s~~~~Rr~~Fr~~Ll~~Vk~~H~~fL~  149 (187)
T d1wlqc_         122 ATCLLQRRQVFRQNLVERVKEQHKVFLA  149 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             3879999999999999999999999997


No 6  
>d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]}
Probab=7.14  E-value=55  Score=13.18  Aligned_cols=19  Identities=26%  Similarity=0.239  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6320355799987423346
Q gi|254780324|r   37 FSISFSSRIVDYVDQKHDL   55 (61)
Q Consensus        37 fsisfssrivdyvdqkhdl   55 (61)
                      +.|+=|+-|..|+..||+|
T Consensus        58 ~~l~qS~AI~~YLa~k~gL   76 (77)
T d1tu7a2          58 QQIVQSGAILRHLARKYNL   76 (77)
T ss_dssp             EEEESHHHHHHHHHHHTTC
T ss_pred             EEEECHHHHHHHHHHHHCC
T ss_conf             7897599999999998583


No 7  
>d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.54  E-value=82  Score=12.22  Aligned_cols=18  Identities=28%  Similarity=0.575  Sum_probs=15.2

Q ss_pred             ECCCEEEEEECCCCHHHH
Q ss_conf             047488888426401688
Q gi|254780324|r   12 AEGSIVNIKWRDANVWLL   29 (61)
Q Consensus        12 aegsivnikwrdanvwll   29 (61)
                      ++|+.+.++||.--||..
T Consensus        16 ~pG~~~~V~WrGkPVfI~   33 (129)
T d3cx5e1          16 PLGKNVVVKWQGKPVFIR   33 (129)
T ss_dssp             CTTCEEEEEETTEEEEEE
T ss_pred             CCCCEEEEEECCCEEEEE
T ss_conf             999759998699569999


No 8  
>d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.40  E-value=70  Score=12.61  Aligned_cols=18  Identities=33%  Similarity=0.637  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             632035579998742334
Q gi|254780324|r   37 FSISFSSRIVDYVDQKHD   54 (61)
Q Consensus        37 fsisfssrivdyvdqkhd   54 (61)
                      +.|+=|.-|..|+..|||
T Consensus        67 ~~l~eS~AIl~YLa~k~n   84 (84)
T d2c4ja2          67 HKITQSNAILRYIARKHN   84 (84)
T ss_dssp             EEEESHHHHHHHHHHHTT
T ss_pred             EEEECHHHHHHHHHHHCC
T ss_conf             788559999999998619


No 9  
>d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.13  E-value=42  Score=13.86  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf             8632035579998742334667522
Q gi|254780324|r   36 YFSISFSSRIVDYVDQKHDLYHDYR   60 (61)
Q Consensus        36 yfsisfssrivdyvdqkhdlyhdyr   60 (61)
                      .+.+.|+..-.+|++..|+++++|.
T Consensus        53 r~r~~~~~~~~~Yl~~ly~~f~~~~   77 (118)
T d1r7ma1          53 TYCMQFEWKNKAYMDHVCLLYDQWV   77 (118)
T ss_dssp             CBEEEEEESCHHHHHHHHHHTGGGC
T ss_pred             CEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             3899993364889999999999875


No 10 
>d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=5.35  E-value=79  Score=12.32  Aligned_cols=19  Identities=26%  Similarity=0.492  Sum_probs=14.4

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6320355799987423346
Q gi|254780324|r   37 FSISFSSRIVDYVDQKHDL   55 (61)
Q Consensus        37 fsisfssrivdyvdqkhdl   55 (61)
                      +.++=|.-|..|+..|++|
T Consensus        67 ~~l~eS~AI~~yLa~k~gL   85 (85)
T d1okta2          67 LILAQSQAIVRYLSKKYNI   85 (85)
T ss_dssp             EEEECHHHHHHHHHHHTTC
T ss_pred             CEEECHHHHHHHHHHHCCC
T ss_conf             8783099999999998097


Done!