Query gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 61 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 13730 Date Wed Jun 1 02:21:55 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780324.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d2qqra2 b.34.9.1 (A:956-1011) 23.0 14 0.0011 16.4 1.2 17 11-27 2-18 (56) 2 d2dlba1 b.174.1.1 (A:2002-2071 20.7 24 0.0017 15.2 2.0 20 5-24 40-59 (70) 3 d1v54l_ f.23.6.1 (L:) Mitochon 19.2 23 0.0017 15.3 1.7 35 12-46 3-37 (46) 4 d1q90n_ f.23.27.1 (N:) PetN su 10.6 54 0.004 13.2 2.1 16 28-43 8-23 (31) 5 d1wlqc_ a.4.5.52 (C:) DNA repl 7.8 71 0.0052 12.6 1.8 28 31-58 122-149 (187) 6 d1tu7a2 c.47.1.5 (A:1-77) Clas 7.1 55 0.004 13.2 0.5 19 37-55 58-76 (77) 7 d3cx5e1 b.33.1.1 (E:87-215) IS 6.5 82 0.006 12.2 1.3 18 12-29 16-33 (129) 8 d2c4ja2 c.47.1.5 (A:2-85) Clas 6.4 70 0.0051 12.6 0.7 18 37-54 67-84 (84) 9 d1r7ma1 d.95.2.1 (A:3-120) DNA 6.1 42 0.0031 13.9 -0.6 25 36-60 53-77 (118) 10 d1okta2 c.47.1.5 (A:1-85) Pf G 5.3 79 0.0057 12.3 0.4 19 37-55 67-85 (85) No 1 >d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]} Probab=23.04 E-value=14 Score=16.44 Aligned_cols=17 Identities=41% Similarity=1.030 Sum_probs=13.9 Q ss_pred EECCCEEEEEECCCCHH Q ss_conf 30474888884264016 Q gi|254780324|r 11 KAEGSIVNIKWRDANVW 27 (61) Q Consensus 11 kaegsivnikwrdanvw 27 (61) -++|..|..+|.|.++. T Consensus 2 P~~Ge~V~VrW~DG~~y 18 (56) T d2qqra2 2 PAEGEVVQVRWTDGQVY 18 (56) T ss_dssp CCTTCEEEEECTTSCEE T ss_pred CCCCCEEEEECCCCCEE T ss_conf 98785899983788798 No 2 >d2dlba1 b.174.1.1 (A:2002-2071) Uncharacterized protein YopT {Bacillus subtilis [TaxId: 1423]} Probab=20.71 E-value=24 Score=15.21 Aligned_cols=20 Identities=40% Similarity=0.569 Sum_probs=15.8 Q ss_pred CCCEEEEECCCEEEEEECCC Q ss_conf 10013430474888884264 Q gi|254780324|r 5 VNSTILKAEGSIVNIKWRDA 24 (61) Q Consensus 5 vnstilkaegsivnikwrda 24 (61) -.-..|||.||.-|.|..|. T Consensus 40 kevsflkadgsvenfklsdm 59 (70) T d2dlba1 40 KEVSFLKADGSVENFKLSDM 59 (70) T ss_dssp SEEEEECTTSCEEEEEEEEE T ss_pred HHHHEEECCCCEECEEECCC T ss_conf 34320133786212130231 No 3 >d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]} Probab=19.19 E-value=23 Score=15.28 Aligned_cols=35 Identities=26% Similarity=0.549 Sum_probs=27.7 Q ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH Q ss_conf 04748888842640168879999986320355799 Q gi|254780324|r 12 AEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIV 46 (61) Q Consensus 12 aegsivnikwrdanvwllfgvvmvyfsisfssriv 46 (61) .||.=.|....-.|-|-|.....+||...|+.-.+ T Consensus 3 ~eGPG~NLPFsv~Nk~rLla~m~~~fGsgfa~PF~ 37 (46) T d1v54l_ 3 EEGPGKNIPFSVENKWRLLAMMTLFFGSGFAAPFF 37 (46) T ss_dssp CCSTTTSSSSCCSSHHHHHHHHHHHHHHHHHHHHH T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHH T ss_conf 88998878732101899999999998021344299 No 4 >d1q90n_ f.23.27.1 (N:) PetN subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]} Probab=10.60 E-value=54 Score=13.22 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=10.7 Q ss_pred HHHHHHHHHHHHHHHH Q ss_conf 8879999986320355 Q gi|254780324|r 28 LLFGVVMVYFSISFSS 43 (61) Q Consensus 28 llfgvvmvyfsisfss 43 (61) +-.+..|+-||.|.|- T Consensus 8 ~awaa~~atfsfslsl 23 (31) T d1q90n_ 8 IGWAATCVMFSFSLSL 23 (31) T ss_dssp HHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHEEEEEE T ss_conf 3798898742225889 No 5 >d1wlqc_ a.4.5.52 (C:) DNA replication factor Cdt1 {Mouse (Mus musculus) [TaxId: 10090]} Probab=7.83 E-value=71 Score=12.58 Aligned_cols=28 Identities=14% Similarity=0.356 Sum_probs=20.2 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 9999986320355799987423346675 Q gi|254780324|r 31 GVVMVYFSISFSSRIVDYVDQKHDLYHD 58 (61) Q Consensus 31 gvvmvyfsisfssrivdyvdqkhdlyhd 58 (61) ..++..---.|.++++|.|...|+-|-+ T Consensus 122 ~s~~~~Rr~~Fr~~Ll~~Vk~~H~~fL~ 149 (187) T d1wlqc_ 122 ATCLLQRRQVFRQNLVERVKEQHKVFLA 149 (187) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 3879999999999999999999999997 No 6 >d1tu7a2 c.47.1.5 (A:1-77) Class pi GST {Onchocerca volvulus [TaxId: 6282]} Probab=7.14 E-value=55 Score=13.18 Aligned_cols=19 Identities=26% Similarity=0.239 Sum_probs=15.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6320355799987423346 Q gi|254780324|r 37 FSISFSSRIVDYVDQKHDL 55 (61) Q Consensus 37 fsisfssrivdyvdqkhdl 55 (61) +.|+=|+-|..|+..||+| T Consensus 58 ~~l~qS~AI~~YLa~k~gL 76 (77) T d1tu7a2 58 QQIVQSGAILRHLARKYNL 76 (77) T ss_dssp EEEESHHHHHHHHHHHTTC T ss_pred EEEECHHHHHHHHHHHHCC T ss_conf 7897599999999998583 No 7 >d3cx5e1 b.33.1.1 (E:87-215) ISP subunit of the mitochondrial cytochrome bc1-complex, water-soluble domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=6.54 E-value=82 Score=12.22 Aligned_cols=18 Identities=28% Similarity=0.575 Sum_probs=15.2 Q ss_pred ECCCEEEEEECCCCHHHH Q ss_conf 047488888426401688 Q gi|254780324|r 12 AEGSIVNIKWRDANVWLL 29 (61) Q Consensus 12 aegsivnikwrdanvwll 29 (61) ++|+.+.++||.--||.. T Consensus 16 ~pG~~~~V~WrGkPVfI~ 33 (129) T d3cx5e1 16 PLGKNVVVKWQGKPVFIR 33 (129) T ss_dssp CTTCEEEEEETTEEEEEE T ss_pred CCCCEEEEEECCCEEEEE T ss_conf 999759998699569999 No 8 >d2c4ja2 c.47.1.5 (A:2-85) Class mu GST {Human (Homo sapiens) [TaxId: 9606]} Probab=6.40 E-value=70 Score=12.61 Aligned_cols=18 Identities=33% Similarity=0.637 Sum_probs=15.0 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 632035579998742334 Q gi|254780324|r 37 FSISFSSRIVDYVDQKHD 54 (61) Q Consensus 37 fsisfssrivdyvdqkhd 54 (61) +.|+=|.-|..|+..||| T Consensus 67 ~~l~eS~AIl~YLa~k~n 84 (84) T d2c4ja2 67 HKITQSNAILRYIARKHN 84 (84) T ss_dssp EEEESHHHHHHHHHHHTT T ss_pred EEEECHHHHHHHHHHHCC T ss_conf 788559999999998619 No 9 >d1r7ma1 d.95.2.1 (A:3-120) DNA endonuclease I-SceI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=6.13 E-value=42 Score=13.86 Aligned_cols=25 Identities=20% Similarity=0.418 Sum_probs=18.9 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHC Q ss_conf 8632035579998742334667522 Q gi|254780324|r 36 YFSISFSSRIVDYVDQKHDLYHDYR 60 (61) Q Consensus 36 yfsisfssrivdyvdqkhdlyhdyr 60 (61) .+.+.|+..-.+|++..|+++++|. T Consensus 53 r~r~~~~~~~~~Yl~~ly~~f~~~~ 77 (118) T d1r7ma1 53 TYCMQFEWKNKAYMDHVCLLYDQWV 77 (118) T ss_dssp CBEEEEEESCHHHHHHHHHHTGGGC T ss_pred CEEEEEECCHHHHHHHHHHHHHHHC T ss_conf 3899993364889999999999875 No 10 >d1okta2 c.47.1.5 (A:1-85) Pf GST {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]} Probab=5.35 E-value=79 Score=12.32 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=14.4 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6320355799987423346 Q gi|254780324|r 37 FSISFSSRIVDYVDQKHDL 55 (61) Q Consensus 37 fsisfssrivdyvdqkhdl 55 (61) +.++=|.-|..|+..|++| T Consensus 67 ~~l~eS~AI~~yLa~k~gL 85 (85) T d1okta2 67 LILAQSQAIVRYLSKKYNI 85 (85) T ss_dssp EEEECHHHHHHHHHHHTTC T ss_pred CEEECHHHHHHHHHHHCCC T ss_conf 8783099999999998097 Done!