BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780324|ref|YP_003064737.1| hypothetical protein
CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780324|ref|YP_003064737.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter
          asiaticus str. psy62]
 gi|254040001|gb|ACT56797.1| hypothetical protein CLIBASIA_01045 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 61

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 61/61 (100%), Positives = 61/61 (100%)

Query: 1  MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYR 60
          MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYR
Sbjct: 1  MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYR 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>gi|315122251|ref|YP_004062740.1| hypothetical protein CKC_02515 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
 gi|313495653|gb|ADR52252.1| hypothetical protein CKC_02515 [Candidatus Liberibacter
          solanacearum CLso-ZC1]
          Length = 66

 Score = 73.1 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/61 (62%), Positives = 49/61 (80%), Gaps = 1/61 (1%)

Query: 1  MGNSVNSTILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKHDLYHDYR 60
          +G+SVNS   K + S   +KWRD N+WLLFG+V+VYFSISFSSR+VDYVD+ H  Y+DY+
Sbjct: 2  IGDSVNSIDFKEKSSSDGVKWRDGNIWLLFGIVVVYFSISFSSRVVDYVDENH-FYYDYK 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>gi|327311383|ref|YP_004338280.1| binding-protein-dependent transport systems inner membrane
           component [Thermoproteus uzoniensis 768-20]
 gi|326947862|gb|AEA12968.1| binding-protein-dependent transport systems inner membrane
           component [Thermoproteus uzoniensis 768-20]
          Length = 543

 Score = 34.2 bits (77), Expect = 7.0,   Method: Composition-based stats.
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)

Query: 9   ILKAEGSIVNIKWRDANVWLLFGVVMVYFSISFSSRIVDYVDQKH 53
           I  AEG+I    W      L+FGVV+V F+I F+ R++D   +K+
Sbjct: 494 ISTAEGNIALAAWAS----LIFGVVVVLFAIFFTRRLMDLAQKKY 534


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.325    0.138    0.426 

Lambda     K      H
   0.267   0.0447    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 798,096,260
Number of Sequences: 14124377
Number of extensions: 30799167
Number of successful extensions: 101261
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 101259
Number of HSP's gapped (non-prelim): 5
length of query: 61
length of database: 4,842,793,630
effective HSP length: 33
effective length of query: 28
effective length of database: 4,376,689,189
effective search space: 122547297292
effective search space used: 122547297292
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 76 (33.8 bits)