RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254780324|ref|YP_003064737.1| hypothetical protein
CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>gnl|CDD|33465 COG3667, PcoB, Uncharacterized protein involved in copper
           resistance [Inorganic ion transport and metabolism].
          Length = 321

 Score = 30.4 bits (68), Expect = 0.12
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 2   GNSVNSTILKAEGSIVNIKWRDANVWLLFG 31
           G  ++  +LKAEG  V+ +W  A V  L G
Sbjct: 147 GTDISKLVLKAEGERVDGRWEKAEVEGLKG 176


>gnl|CDD|79364 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins.
          This ClC family presents in bacteria, where it
          facilitates acid resistance in acidic soil. Mutation of
          this gene (sycA) in Rhizobium tropici CIAT899 causes
          serious deficiencies in nodule development, nodulation
          competitiveness, and N2 fixation on Phaseolus vulgaris
          plants, due to its reduced ability for acid resistance.
           This family is part of the ClC chloride channel
          superfamiy. These proteins catalyse the selective flow
          of Cl- ions across cell membranes and Cl-/H+ exchange
          transport. These proteins share two characteristics
          that are apparently inherent to the entire ClC chloride
          channel superfamily: a unique double-barreled
          architecture and voltage-dependent gating mechanism.
          The gating is conferred by the permeating anion itself,
          acting as the gating charge..
          Length = 378

 Score = 23.9 bits (52), Expect = 9.8
 Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 5/23 (21%)

Query: 20 KWRDANVWLLF-----GVVMVYF 37
          ++R+A+ WLL      G+++ Y 
Sbjct: 25 EFREAHPWLLPFLPLAGLLIGYL 47


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0824    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 750,069
Number of extensions: 28747
Number of successful extensions: 109
Number of sequences better than 10.0: 1
Number of HSP's gapped: 109
Number of HSP's successfully gapped: 5
Length of query: 61
Length of database: 6,263,737
Length adjustment: 33
Effective length of query: 28
Effective length of database: 5,550,640
Effective search space: 155417920
Effective search space used: 155417920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.2 bits)