RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780324|ref|YP_003064737.1| hypothetical protein
CLIBASIA_01045 [Candidatus Liberibacter asiaticus str. psy62]
         (61 letters)



>d1hnfa2 b.1.1.3 (A:105-182) CD2, second domain {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 78

 Score = 22.5 bits (48), Expect = 9.9
 Identities = 4/26 (15%), Positives = 8/26 (30%)

Query: 4  SVNSTILKAEGSIVNIKWRDANVWLL 29
            +   LK    ++  KW  +     
Sbjct: 31 YQDGKHLKLSQRVITHKWTTSLSAKF 56


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.426 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,524
Number of extensions: 7748
Number of successful extensions: 28
Number of sequences better than 10.0: 1
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 4
Length of query: 61
Length of database: 2,407,596
Length adjustment: 31
Effective length of query: 30
Effective length of database: 1,981,966
Effective search space: 59458980
Effective search space used: 59458980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)