HHsearch alignment for GI: 254780325 and conserved domain: cd04661
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.49 E-value=9.4e-07 Score=59.33 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=67.5
Q ss_pred CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEEEEECCCCC-------CEEEEEE
Q ss_conf 869999917898889838225731017874889999888876265202442--0255665205788-------6069999
Q gi|254780325|r 22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS--LVPLTFISHPYEK-------FHLLMPF 92 (141)
Q Consensus 22 ~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~--~~~~~~~~~~~~~-------~~~~~~~ 92 (141)
T Consensus 13 tLyLlVk~k~--g~~~~W~fP~~~~~~~EtLr~~Aer~L~~~~G~~~~~~~vgnaP~g~~k~k~p~~~~~~~~~G~K~Ff 90 (132)
T cd04661 13 TLVLLVQQKV--GSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF 90 (132)
T ss_pred EEEEEEEECC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf 3999999537--98888028842466785489999999998607773678962687588987568522444666347999
Q ss_pred EEEEEECCEECCC-HHHEEEECCHHHHCCC
Q ss_conf 9999754837688-2331570277883248
Q gi|254780325|r 93 FVCHCFEGIPQSC-EGQQLQWVALDDLQNY 121 (141)
Q Consensus 93 ~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~ 121 (141)
T Consensus 91 ~ka~~~~G~~~~~~~~~df~Wltk~EL~~~ 120 (132)
T cd04661 91 FKARYMSGQFELSQNQVDFKWLAKEELQKY 120 (132)
T ss_pred EEEEEECCCCCCCCCCCEEEECCHHHHHHH
T ss_conf 999995586465677520387089999876