HHsearch alignment for GI: 254780325 and conserved domain: cd04669
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.88 E-value=4.5e-22 Score=147.65 Aligned_cols=107 Identities=30% Similarity=0.485 Sum_probs=83.7
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141)
Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141)
T Consensus 3 a~~ii~~~~~~vLl~~r~~~~--~~~w~~PGG~ve~gEt~~~a~~RE~~EE~g~~v~~~~~~~~~~~--~~~----~~~~ 74 (121)
T cd04669 3 ASIVIINDQGEILLIRRIKPG--KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ--NGR----TEHY 74 (121)
T ss_pred EEEEEEECCCEEEEEEECCCC--CCEEECCCCEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEE--CCC----EEEE
T ss_conf 899999779999999984899--98698996060599999999999988760988996559999974--798----0699
Q ss_pred EEEEEECCEECCC-----------HHHEEEECCHHHHCCCCCCCCC
Q ss_conf 9999754837688-----------2331570277883248897369
Q gi|254780325|r 93 FVCHCFEGIPQSC-----------EGQQLQWVALDDLQNYSMLPAD 127 (141)
Q Consensus 93 ~~~~~~~~~~~~~-----------E~~~~~Wi~~~el~~~~~~~~~ 127 (141)
T Consensus 75 F~~~i~~g~~~~~~~~e~~~~~~~~~~e~~WvpldeL~~l~l~P~~ 120 (121)
T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRPEQ 120 (121)
T ss_pred EEEEEECCEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCC
T ss_conf 9999981478158784235778887289999779992728989887