HHsearch alignment for GI: 254780325 and conserved domain: cd04683
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.94 E-value=1.1e-25 Score=168.57 Aligned_cols=110 Identities=25% Similarity=0.409 Sum_probs=92.1
Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCCCCEEEE
Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520-578860699
Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH-PYEKFHLLM 90 (141)
Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (141)
T Consensus 1 vav~vvl~~~~~vLL~~R~~~~~~~G~W~~PGG~ve~GEt~~~aa~REl~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~ 80 (120)
T cd04683 1 VAVYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG 80 (120)
T ss_pred CEEEEEEEECCEEEEEECCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEECCCCCCCEEEE
T ss_conf 98999999399999997789999999798975887799999999999988876938873408999988326899879999
Q ss_pred EEEEEEEECCEECC---CHHHEEEECCHHHHCCC
Q ss_conf 99999975483768---82331570277883248
Q gi|254780325|r 91 PFFVCHCFEGIPQS---CEGQQLQWVALDDLQNY 121 (141)
Q Consensus 91 ~~~~~~~~~~~~~~---~E~~~~~Wi~~~el~~~ 121 (141)
T Consensus 81 ~~f~~~~~~g~p~~~~p~e~~~~~Wf~~deLP~~ 114 (120)
T cd04683 81 LFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDD 114 (120)
T ss_pred EEEEEEEECCEEECCCCCCEEEEEEECHHHCCCC
T ss_conf 9999997478986189981458999998899886