Query         gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 141
No_of_seqs    121 out of 6751
Neff          8.1 
Searched_HMMs 39220
Date          Sun May 29 15:26:44 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780325.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PRK08999 hypothetical protein; 100.0 3.1E-36   8E-41  229.3  14.2  129    6-136     1-129 (312)
  2 PRK10776 nucleoside triphospha 100.0 8.3E-36 2.1E-40  226.8  14.6  128    6-136     1-128 (129)
  3 PRK10546 pyrimidine (deoxy)nuc 100.0 2.2E-34 5.5E-39  218.7  14.4  127    8-137     2-128 (135)
  4 cd03425 MutT_pyrophosphohydrol 100.0 7.5E-34 1.9E-38  215.6  13.5  124   10-135     1-124 (124)
  5 cd03427 MTH1 MutT homolog-1 (M 100.0 3.6E-30 9.2E-35  194.4  14.5  126   13-139     3-129 (137)
  6 cd04699 Nudix_Hydrolase_39 Mem 100.0 4.4E-28 1.1E-32  182.3  13.4  121   11-131     2-127 (129)
  7 cd04691 Nudix_Hydrolase_32 Mem 100.0   1E-27 2.6E-32  180.3  12.6  112   11-128     1-113 (117)
  8 cd04673 Nudix_Hydrolase_15 Mem  99.9 3.2E-27 8.2E-32  177.3  12.6  116   12-128     1-121 (122)
  9 cd04696 Nudix_Hydrolase_37 Mem  99.9 3.7E-27 9.5E-32  177.0  12.8  120   10-132     2-125 (125)
 10 TIGR00586 mutt mutator mutT pr  99.9 1.1E-27 2.8E-32  180.1   6.9  128    7-136     2-150 (150)
 11 cd04690 Nudix_Hydrolase_31 Mem  99.9 3.6E-26 9.2E-31  171.3  13.3  112   12-128     2-117 (118)
 12 cd04679 Nudix_Hydrolase_20 Mem  99.9 3.3E-26 8.4E-31  171.5  12.6  118   12-131     4-124 (125)
 13 cd04681 Nudix_Hydrolase_22 Mem  99.9 4.2E-26 1.1E-30  170.9  12.3  121   12-133     3-128 (130)
 14 cd04683 Nudix_Hydrolase_24 Mem  99.9 1.1E-25 2.7E-30  168.6  13.3  110   12-121     1-114 (120)
 15 cd04678 Nudix_Hydrolase_19 Mem  99.9   2E-25 5.1E-30  167.0  12.5  119   12-131     4-128 (129)
 16 cd04672 Nudix_Hydrolase_14 Mem  99.9 4.7E-25 1.2E-29  164.9  12.8  116   12-131     3-122 (123)
 17 cd04676 Nudix_Hydrolase_17 Mem  99.9 4.4E-25 1.1E-29  165.0  12.0  119   10-132     2-128 (129)
 18 cd04511 Nudix_Hydrolase_4 Memb  99.9   4E-25   1E-29  165.3  11.6  108   12-124    14-124 (130)
 19 cd04684 Nudix_Hydrolase_25 Con  99.9 1.4E-24 3.7E-29  162.1  13.0  116   14-130     3-126 (128)
 20 cd04671 Nudix_Hydrolase_13 Mem  99.9 4.6E-24 1.2E-28  159.1  13.2  114   12-134     2-120 (123)
 21 cd04682 Nudix_Hydrolase_23 Mem  99.9   5E-24 1.3E-28  158.9  12.4  110   13-124     3-117 (122)
 22 cd04687 Nudix_Hydrolase_28 Mem  99.9 8.5E-24 2.2E-28  157.6  12.7  113   12-126     2-126 (128)
 23 cd04677 Nudix_Hydrolase_18 Mem  99.9 8.2E-24 2.1E-28  157.7  12.2  121    7-132     3-132 (132)
 24 cd04700 DR1025_like DR1025 fro  99.9 9.7E-24 2.5E-28  157.3  12.3  110   11-122    14-126 (142)
 25 cd03430 GDPMH GDP-mannose glyc  99.9 3.9E-23   1E-27  153.8  13.6  112   12-124    14-135 (144)
 26 cd04695 Nudix_Hydrolase_36 Mem  99.9 7.4E-23 1.9E-27  152.2  13.7  125   12-138     4-131 (131)
 27 cd04670 Nudix_Hydrolase_12 Mem  99.9 7.4E-23 1.9E-27  152.2  13.1  115   12-130     4-122 (127)
 28 cd03675 Nudix_Hydrolase_2 Cont  99.9 1.1E-22 2.7E-27  151.3  13.5  108   13-122     2-112 (134)
 29 cd04667 Nudix_Hydrolase_10 Mem  99.9 4.3E-23 1.1E-27  153.5  11.5  107   14-131     3-111 (112)
 30 cd04688 Nudix_Hydrolase_29 Mem  99.9 1.2E-22 3.2E-27  150.9  13.4  110   13-126     3-123 (126)
 31 cd04664 Nudix_Hydrolase_7 Memb  99.9 1.2E-22 3.1E-27  151.0  12.6  120    9-131     3-128 (129)
 32 cd02883 Nudix_Hydrolase Nudix   99.9 1.9E-22 4.9E-27  149.8  13.3  118   12-131     2-122 (123)
 33 cd04680 Nudix_Hydrolase_21 Mem  99.9 1.5E-22 3.7E-27  150.5  12.7  114   13-132     3-118 (120)
 34 cd03673 Ap6A_hydrolase Diadeno  99.9 2.1E-22 5.2E-27  149.6  12.8  120   12-135     3-130 (131)
 35 cd03674 Nudix_Hydrolase_1 Memb  99.9 2.7E-22 6.8E-27  149.0  12.4  119   12-134     4-136 (138)
 36 PRK09438 ntpA dATP pyrophospho  99.9 1.9E-22 4.9E-27  149.8  11.1  133    2-138     1-147 (148)
 37 cd04669 Nudix_Hydrolase_11 Mem  99.9 4.5E-22 1.2E-26  147.6  12.9  107   13-127     3-120 (121)
 38 pfam00293 NUDIX NUDIX domain.   99.9 2.1E-21 5.3E-26  143.8  13.2  124   12-135     4-131 (133)
 39 cd04694 Nudix_Hydrolase_35 Mem  99.9 7.2E-21 1.8E-25  140.7  11.5  109   13-121     4-131 (143)
 40 COG1051 ADP-ribose pyrophospha  99.8 3.3E-20 8.5E-25  136.9  13.7  133    2-136     2-138 (145)
 41 cd04689 Nudix_Hydrolase_30 Mem  99.8 1.6E-20 4.1E-25  138.7  11.7  106   12-121     2-114 (125)
 42 cd03428 Ap4A_hydrolase_human_l  99.8 2.7E-20   7E-25  137.4  12.3  118   12-134     4-128 (130)
 43 PRK05379 bifunctional nicotina  99.8 4.2E-20 1.1E-24  136.3  11.3  129    8-137   199-339 (340)
 44 cd04693 Nudix_Hydrolase_34 Mem  99.8 4.3E-20 1.1E-24  136.2  11.0  108   12-121     2-113 (127)
 45 cd03429 NADH_pyrophosphatase N  99.8 1.4E-20 3.6E-25  139.0   8.1  121   12-138     2-128 (131)
 46 cd04697 Nudix_Hydrolase_38 Mem  99.8 1.2E-19   3E-24  133.7  12.0  113   12-127     2-122 (126)
 47 cd03671 Ap4A_hydrolase_plant_l  99.8   7E-19 1.8E-23  129.2  10.6  122   12-137     5-146 (147)
 48 cd04674 Nudix_Hydrolase_16 Mem  99.8 1.2E-18 3.1E-23  127.8   9.9  107   13-124     6-116 (118)
 49 PRK00714 dinucleoside polyphos  99.8   2E-18 5.1E-23  126.6  10.4  128    6-138     4-151 (156)
 50 cd04686 Nudix_Hydrolase_27 Mem  99.8 7.2E-18 1.8E-22  123.4  11.4  105   13-121     2-119 (131)
 51 cd04692 Nudix_Hydrolase_33 Mem  99.8 6.8E-18 1.7E-22  123.6  10.5  111   11-121     3-127 (144)
 52 cd04685 Nudix_Hydrolase_26 Mem  99.8 2.2E-17 5.6E-22  120.6  12.5  115   12-126     2-130 (133)
 53 cd02885 IPP_Isomerase Isopente  99.7 4.7E-17 1.2E-21  118.7  12.4  111    9-121    29-148 (165)
 54 COG2816 NPY1 NTP pyrophosphohy  99.7 4.2E-17 1.1E-21  119.0   6.9  104   13-122   146-252 (279)
 55 PRK03759 isopentenyl-diphospha  99.7 7.7E-16   2E-20  111.7  13.1  112    9-121    33-152 (184)
 56 cd03672 Dcp2p mRNA decapping e  99.7 1.5E-16 3.9E-21  115.7   9.2  104   11-121     2-111 (145)
 57 PRK00241 nudC NADH pyrophospha  99.7   1E-16 2.6E-21  116.8   7.8  104   13-122   135-240 (257)
 58 cd03426 CoAse Coenzyme A pyrop  99.7 6.8E-16 1.7E-20  112.0  10.0  106   13-120     5-117 (157)
 59 cd04665 Nudix_Hydrolase_8 Memb  99.6 1.8E-15 4.7E-20  109.5  11.0   94   14-114     3-98  (118)
 60 cd03424 ADPRase_NUDT5 ADP-ribo  99.6 2.8E-15 7.1E-20  108.5  10.2  107   13-121     5-115 (137)
 61 PRK10707 hypothetical protein;  99.6 1.2E-14 3.1E-19  104.8  11.4  101   19-121    41-146 (190)
 62 PRK11762 nudE ADP-ribose dipho  99.6 1.3E-14 3.2E-19  104.7  10.4  104   16-121    53-159 (185)
 63 cd03431 DNA_Glycosylase_C DNA   99.6 3.2E-14 8.2E-19  102.4  10.6  114   13-134     5-118 (118)
 64 TIGR02705 nudix_YtkD nucleosid  99.5   3E-14 7.7E-19  102.5   7.5   86    6-100    22-108 (158)
 65 KOG3084 consensus               99.5 4.2E-15 1.1E-19  107.5   1.2  106   10-119   187-296 (345)
 66 COG0494 MutT NTP pyrophosphohy  99.4 3.3E-12 8.3E-17   90.8  13.2  110   13-125    14-138 (161)
 67 PRK10729 nudF ADP-ribose pyrop  99.4 1.6E-12 4.1E-17   92.6  10.5  107   13-121    52-171 (202)
 68 cd04666 Nudix_Hydrolase_9 Memb  99.4 3.2E-12 8.1E-17   90.9  11.6  104   13-120     3-114 (122)
 69 cd03676 Nudix_hydrolase_3 Memb  99.2 3.1E-10   8E-15   79.4  12.9  116   23-138    49-180 (180)
 70 KOG2839 consensus               99.2 2.4E-11   6E-16   85.8   6.6  108   10-120     9-124 (145)
 71 cd04662 Nudix_Hydrolase_5 Memb  99.2   8E-11   2E-15   82.8   8.6   78   13-95      3-87  (126)
 72 cd04663 Nudix_Hydrolase_6 Memb  99.2 3.4E-11 8.6E-16   85.0   6.6  100   15-120     4-115 (126)
 73 PRK10880 adenine DNA glycosyla  99.2 1.5E-10 3.9E-15   81.2   9.3  119    9-137   229-347 (350)
 74 KOG0648 consensus               99.1 1.4E-10 3.6E-15   81.4   4.9  111   13-123   118-233 (295)
 75 COG1443 Idi Isopentenyldiphosp  99.0 1.4E-09 3.5E-14   75.7   8.9  113   10-122    33-154 (185)
 76 KOG3069 consensus               99.0 1.1E-09 2.8E-14   76.2   8.4   99   22-120    58-162 (246)
 77 PRK13910 DNA glycosylase MutY;  98.9   3E-09 7.5E-14   73.8   6.2   97   15-139   191-287 (290)
 78 KOG3041 consensus               98.9 1.6E-08 4.1E-13   69.5   9.3  107   13-119    77-192 (225)
 79 cd03670 ADPRase_NUDT9 ADP-ribo  98.5 4.7E-07 1.2E-11   61.1   8.0  108   23-136    50-184 (186)
 80 cd04661 MRP_L46 Mitochondrial   98.5 9.4E-07 2.4E-11   59.3   8.5   98   22-121    13-120 (132)
 81 COG4119 Predicted NTP pyrophos  98.5 8.9E-07 2.3E-11   59.5   8.3  122   13-138     6-151 (161)
 82 KOG0142 consensus               98.2 1.3E-06 3.3E-11   58.5   4.4  130   10-139    52-203 (225)
 83 KOG4195 consensus               98.1 1.4E-05 3.7E-10   52.5   7.4  109   23-137   140-270 (275)
 84 COG1194 MutY A/G-specific DNA   98.1   5E-06 1.3E-10   55.1   4.6  107   10-135   235-341 (342)
 85 TIGR02150 IPP_isom_1 isopenten  98.0 9.5E-05 2.4E-09   47.8   9.9  114    9-122    29-172 (190)
 86 TIGR00052 TIGR00052 conserved   97.7 3.4E-05 8.6E-10   50.4   4.1   64   38-101    88-152 (199)
 87 KOG2937 consensus               97.7   9E-06 2.3E-10   53.7   0.2  107    7-118    79-189 (348)
 88 COG4112 Predicted phosphoester  97.6 0.00077   2E-08   42.5   9.1  113    4-120    57-186 (203)
 89 KOG4313 consensus               97.0  0.0018 4.7E-08   40.3   5.4   96   23-118   149-255 (306)
 90 KOG4432 consensus               96.6  0.0052 1.3E-07   37.7   5.6   60   39-98     81-140 (405)
 91 KOG1689 consensus               96.6  0.0055 1.4E-07   37.6   5.3   57    2-65     64-122 (221)
 92 KOG4548 consensus               95.5   0.082 2.1E-06   30.8   7.3   99   21-121   138-247 (263)
 93 KOG4432 consensus               95.1   0.087 2.2E-06   30.7   6.3   83   38-121   285-376 (405)
 94 TIGR01084 mutY A/G-specific ad  93.7   0.072 1.8E-06   31.2   3.4   34   14-47    245-278 (297)
 95 TIGR00586 mutt mutator mutT pr  91.2  0.0065 1.7E-07   37.2  -4.6   60   13-72     84-143 (150)
 96 KOG2457 consensus               89.4   0.053 1.4E-06   31.9  -1.2  100   21-120   386-490 (555)
 97 pfam08584 Ribonuc_P_40 Ribonuc  47.9      20 0.00051   17.1   3.0   49   19-74     14-63  (283)
 98 KOG1202 consensus               47.3      22 0.00057   16.8   3.2   28   40-73    271-298 (2376)
 99 PRK07198 hypothetical protein;  34.7      38 0.00096   15.5   3.5   46   15-65    155-200 (418)
100 PRK09605 O-sialoglycoprotein e  28.9      48  0.0012   14.9   4.1   62    7-75      8-75  (536)
101 PRK00047 glpK glycerol kinase;  28.6      48  0.0012   14.9   6.4   67    4-77      1-79  (498)
102 pfam09520 RE_MjaII MjaII restr  28.1      20 0.00052   17.0   0.4   11   54-64    172-182 (252)
103 pfam07026 DUF1317 Protein of u  27.8      46  0.0012   15.0   2.2   25   37-65     22-46  (60)
104 pfam11152 DUF2930 Protein of u  24.8      57  0.0014   14.5   2.8   36   13-56     94-129 (196)
105 KOG2479 consensus               24.3      48  0.0012   14.9   1.8   30   91-122   372-401 (549)
106 COG0828 RpsU Ribosomal protein  23.5      47  0.0012   14.9   1.6   29   41-69      1-31  (67)
107 PRK00270 rpsU 30S ribosomal pr  20.5      61  0.0016   14.3   1.7   26   42-67      2-29  (66)
108 cd00598 GH18_chitinase-like Th  20.5      66  0.0017   14.1   1.9   28   38-65    111-138 (210)

No 1  
>PRK08999 hypothetical protein; Provisional
Probab=100.00  E-value=3.1e-36  Score=229.29  Aligned_cols=129  Identities=40%  Similarity=0.675  Sum_probs=119.7

Q ss_pred             CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             78649999999993598699999178988898382257310178748899998888762652024420255665205788
Q gi|254780325|r    6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus         6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      |-|.+.||+++|++.+|+||+++|+.+.+++|+|+|||||+|+|||+++|++||++||+||+++...  ++..+.|.|++
T Consensus         1 ~~k~i~V~~gvi~~~~~~vLi~~R~~~~~~~g~WEFPGGKvE~~Et~~~aL~REl~EElgI~v~~~~--~~~~~~h~Y~~   78 (312)
T PRK08999          1 SMKRVHVAAAVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELREELGIEVTAAR--PLITVPHDYPD   78 (312)
T ss_pred             CCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE--EEEEEEEECCC
T ss_conf             9847999999998589969999789999878846489886799989999999998887092763213--88999996498


Q ss_pred             CEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             606999999997548376882331570277883248897369899999987
Q gi|254780325|r   86 FHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRK  136 (141)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~  136 (141)
                      +.+.+++|.|+.++|+|.+.|+++++|++++++.+++|+|+|++++++|+-
T Consensus        79 ~~v~L~~~~v~~~~G~~~~~EgQ~~~Wv~~~~l~~~~fp~AN~~Ii~~l~L  129 (312)
T PRK08999         79 KRVRLDVREVTAWQGEPHGREGQPLAWVAPDELAVYPFPPANQPIVRALRL  129 (312)
T ss_pred             EEEEEEEEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHHHHHCC
T ss_conf             499999999873077004656875667765335458999998699985035


No 2  
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=100.00  E-value=8.3e-36  Score=226.85  Aligned_cols=128  Identities=32%  Similarity=0.526  Sum_probs=117.1

Q ss_pred             CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             78649999999993598699999178988898382257310178748899998888762652024420255665205788
Q gi|254780325|r    6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus         6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      || .+.||+++|.+.+|++|++||+.++.++|+|+||||++|+|||+++|++||++||+|++++....  +.++.|.|++
T Consensus         1 mk-~i~V~~aii~~~~~~~Li~~R~~~~~~~g~WEFPGGKvE~gEt~~~Al~REl~EElgi~v~~~~~--~~~~~~~y~~   77 (129)
T PRK10776          1 MK-KLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEAGETPEQALIRELQEEVGITPQQATL--FEKLEYEFPD   77 (129)
T ss_pred             CC-EEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCEEEEECCE--EEEEEEECCC
T ss_conf             97-68999999994899899999699998898591992852799798999999987751716760529--9999998998


Q ss_pred             CEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             606999999997548376882331570277883248897369899999987
Q gi|254780325|r   86 FHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRK  136 (141)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~  136 (141)
                      .++.+++|.|+.++|+|...|+++++|++++++.+++|+|+|+++++.|++
T Consensus        78 ~~i~l~~f~~~~~~G~~~~~e~~~~~Wv~~~eL~~~~~~~ad~~ii~~L~~  128 (129)
T PRK10776         78 RHITLWFWLVESWEGEPWGKEGQPGRWVSQVALNADDFPPANEPIIAKLKR  128 (129)
T ss_pred             EEEEEEEEEEEECCCEECCCCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHC
T ss_conf             099999999997169997565767599778883659978684999999860


No 3  
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=100.00  E-value=2.2e-34  Score=218.70  Aligned_cols=127  Identities=33%  Similarity=0.517  Sum_probs=114.0

Q ss_pred             CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCE
Q ss_conf             64999999999359869999917898889838225731017874889999888876265202442025566520578860
Q gi|254780325|r    8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH   87 (141)
Q Consensus         8 ~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~   87 (141)
                      |++.||+ +|+.++|+||++||+.++.++|+|+|||||+|+|||+++|++||++|||||++.+.+.+  .+..|.+++..
T Consensus         2 k~i~Vva-aii~~~~rvLi~~R~~~~~~~g~WEFPGGKvE~gEs~~~Al~REl~EElgi~v~~~~~l--~~~~~~~~~~~   78 (135)
T PRK10546          2 KMIDVVA-AIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYI--ASHQREVSGRI   78 (135)
T ss_pred             CEEEEEE-EEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEE--EEEEEECCCEE
T ss_conf             8789999-99995999999988999999985929832168987989999888787509589845689--99988779989


Q ss_pred             EEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             69999999975483768823315702778832488973698999999872
Q gi|254780325|r   88 LLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH  137 (141)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~  137 (141)
                      +.+++|.|+..+|++...|+++++|++++++.+++|+|+|.++|+.|...
T Consensus        79 i~l~~~~~~~~~g~~~~~e~~~~~Wv~~~el~~~~~~pAd~~il~~l~a~  128 (135)
T PRK10546         79 IHLHAWHVPDFHGTLQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL  128 (135)
T ss_pred             EEEEEEEEEEECCEEEECCCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHH
T ss_conf             99999999988881821456756992389935499885859999999997


No 4  
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=100.00  E-value=7.5e-34  Score=215.57  Aligned_cols=124  Identities=40%  Similarity=0.728  Sum_probs=114.4

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             99999999935986999991789888983822573101787488999988887626520244202556652057886069
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      +.||+++|++++|++||+||+.++.++|+|+||||++|.|||+++|++||++||||+++++.+.+  ..+.|.+++.++.
T Consensus         1 ~~Vv~avI~~~~g~vLl~~R~~~~~~~g~W~~PGG~ve~gE~~~~a~~RE~~EEtGl~v~~~~~~--~~~~~~~~~~~~~   78 (124)
T cd03425           1 IEVVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL--ATVEHDYPDKRVT   78 (124)
T ss_pred             CEEEEEEEEECCCEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEE--EEEEEECCCEEEE
T ss_conf             96999999979998999986899999994979876796999999999999999869704674699--9998988991899


Q ss_pred             EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             9999999754837688233157027788324889736989999998
Q gi|254780325|r   90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLR  135 (141)
Q Consensus        90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~  135 (141)
                      +++|.|+..+++++..|+++++|++++++.+++|+|+|+++++.|+
T Consensus        79 l~~f~~~~~~g~~~~~E~~~~~Wv~~~el~~l~~~~a~~~il~~L~  124 (124)
T cd03425          79 LHVFLVELWSGEPQLLEHQELRWVPPEELDDLDFPPADVPIVAALQ  124 (124)
T ss_pred             EEEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHC
T ss_conf             9999989707808336453659802999364999826189999749


No 5  
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA.  Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.97  E-value=3.6e-30  Score=194.35  Aligned_cols=126  Identities=33%  Similarity=0.491  Sum_probs=111.0

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      +..+++.++|+|||++|++++. .|+|+||||++|+|||+++||+||++|||||+++..++++...+.+++.+.++.+++
T Consensus         3 ~tl~ii~~~~kiLl~~R~~~~~-~G~W~~PGGkvE~gEt~~~a~~REl~EEtGl~v~~~~~~g~~~~~~~~~~~~~~~~~   81 (137)
T cd03427           3 TTLCFIKDPDKVLLLNRKKGPG-WGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV   81 (137)
T ss_pred             EEEEEEEECCEEEEEEECCCCC-CCEEECCEEECCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCCEEEEEEE
T ss_conf             8999999899999999699999-995979556567997999999999989869288713899999999279998999999


Q ss_pred             EEEEEECCEECC-CHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             999975483768-82331570277883248897369899999987215
Q gi|254780325|r   93 FVCHCFEGIPQS-CEGQQLQWVALDDLQNYSMLPADLSLISFLRKHAL  139 (141)
Q Consensus        93 ~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~~  139 (141)
                      |.|+.++|++.. +++.+++|++++++.+++++|+|+++++.+.+...
T Consensus        82 f~~~~~~G~~~~~~~e~~l~Wv~~~el~~l~~~p~d~~~l~~ll~~~~  129 (137)
T cd03427          82 FLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWLPLMLEKNL  129 (137)
T ss_pred             EEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHCCCC
T ss_conf             999835247679883336899849897758998236899999977993


No 6  
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.96  E-value=4.4e-28  Score=182.33  Aligned_cols=121  Identities=32%  Similarity=0.602  Sum_probs=101.7

Q ss_pred             EEEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             9999999935986999991789-888983822573101787488999988887626520244202556652057886069
Q gi|254780325|r   11 LVVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        11 ~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      ..|+++|++++|++||+||+.+ ..++|+|+||||++|+|||+++||+||++||||++++.........+...++..++.
T Consensus         2 v~V~~~I~~~~g~vLl~kR~~~~~~~~G~W~~PGG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   81 (129)
T cd04699           2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI   81 (129)
T ss_pred             EEEEEEEEECCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCEEEE
T ss_conf             89999999899989999808999999981889805065998999999999999879577876887699997279950899


Q ss_pred             EEEEEEEEECCEECC-CHHHEEEECCHHHHCCCCC---CCCCHHHH
Q ss_conf             999999975483768-8233157027788324889---73698999
Q gi|254780325|r   90 MPFFVCHCFEGIPQS-CEGQQLQWVALDDLQNYSM---LPADLSLI  131 (141)
Q Consensus        90 ~~~~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~---~~~~~~ii  131 (141)
                      .++|.|+..++.+.. .|+++++|+++++|++++.   +++++..+
T Consensus        82 ~~~f~~~~~~~~~~~~~E~~e~~Wv~~eeL~~L~~d~~~~~~~~~~  127 (129)
T cd04699          82 YLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKADILFEPSKIFL  127 (129)
T ss_pred             EEEEEEEECCCCCCCCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHH
T ss_conf             9999986248868788652066998489975487975655206652


No 7  
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.95  E-value=1e-27  Score=180.26  Aligned_cols=112  Identities=29%  Similarity=0.452  Sum_probs=91.3

Q ss_pred             EEEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             9999999935986999991789-888983822573101787488999988887626520244202556652057886069
Q gi|254780325|r   11 LVVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        11 ~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      +||+++| .++|++|++||+.+ ...+|+|+|||||+|+|||+++|++||++||+||++...+++  .+..+.+.+.. .
T Consensus         1 hVVagii-~~~~kvLl~rR~~~~~~~~G~WefPGGkvE~gEt~~~Al~REl~EElgI~v~~~~~~--~~~~~~~~~~~-~   76 (117)
T cd04691           1 HGVVGVL-FSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL--CSLYHPTSELQ-L   76 (117)
T ss_pred             CEEEEEE-EECCEEEEEECCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCEEEECCEEE--EEEEECCCCEE-E
T ss_conf             9799999-989999999889999999996989745177988999999999889819156224589--99985599969-9


Q ss_pred             EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCH
Q ss_conf             999999975483768823315702778832488973698
Q gi|254780325|r   90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADL  128 (141)
Q Consensus        90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~  128 (141)
                      +++|.|+.++|+|++.|+++++|++++|+...  ..+|+
T Consensus        77 l~~~~~~~~~G~~~~~E~~e~~Wv~~~el~~~--~~ad~  113 (117)
T cd04691          77 LHYYVVTFWQGEIPAQEAAEVHWMTANDIVLA--SEADR  113 (117)
T ss_pred             EEEEEEEEECCEECCCCCCCCEECCHHHCCCC--CCCCC
T ss_conf             99999999817664334770577169995386--44551


No 8  
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.95  E-value=3.2e-27  Score=177.34  Aligned_cols=116  Identities=34%  Similarity=0.558  Sum_probs=95.6

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC----CCE
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520578----860
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE----KFH   87 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~----~~~   87 (141)
                      |+|++|+.++|||||+||++.+ .+|+|+||||++|+|||+.+||+||++||||+.+....++......+...    .++
T Consensus         1 v~v~~ii~~~~kvLL~~R~~~~-~~g~W~lPGG~ve~gEs~~~a~~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   79 (122)
T cd04673           1 VAVGAVVFRGGRVLLVRRANPP-DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFH   79 (122)
T ss_pred             CEEEEEEEECCEEEEEEECCCC-CCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCCEEEE
T ss_conf             9899999989999999969999-999799989685789999999999999988976476069999910202899965899


Q ss_pred             EEEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCH
Q ss_conf             699999999754837688-23315702778832488973698
Q gi|254780325|r   88 LLMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADL  128 (141)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~  128 (141)
                      +.+.+|.|+..++++..+ |+.+++|++++++++++++|+||
T Consensus        80 ~~~~~f~~~~~~g~~~~~~E~~e~~W~~~del~~l~l~~~~R  121 (122)
T cd04673          80 YVLIDFLCRYLGGEPVAGDDALDARWVPLDELAALSLTESTR  121 (122)
T ss_pred             EEEEEEEEEECCCEEECCCCEEEEEEEEHHHCCCCCCCCCCC
T ss_conf             999999999739988419883888998699914798993436


No 9  
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.95  E-value=3.7e-27  Score=176.97  Aligned_cols=120  Identities=26%  Similarity=0.413  Sum_probs=98.2

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC---CCCC
Q ss_conf             9999999993598699999178988898382257310178748899998888762652024420255665205---7886
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHP---YEKF   86 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~---~~~~   86 (141)
                      +..|+++|++++|++||+||++   ..|+|+||||++|+|||+++||+||++|||||+++..++.......+.   +...
T Consensus         2 ~v~V~avI~~~~g~vLl~r~~~---~~g~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   78 (125)
T cd04696           2 LVTVGALIYAPDGRILLVRTTK---WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA   78 (125)
T ss_pred             CCEEEEEEEECCCEEEEEEECC---CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCC
T ss_conf             0179999994999899999369---9995989865886995999999999999759576535899888221267677776


Q ss_pred             EEEEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCHHHHH
Q ss_conf             0699999999754837688-233157027788324889736989999
Q gi|254780325|r   87 HLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADLSLIS  132 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~~ii~  132 (141)
                      ++....|.|+..++.+..+ |+++++|++++++.++++.+.++.+|+
T Consensus        79 h~~~~~~~~~~~~~~~~~~~E~~e~~Wv~~~el~~~~l~~~~r~~ie  125 (125)
T cd04696          79 HFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALDYPLNSFTRLLLE  125 (125)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHCCCCCHHHHHHHC
T ss_conf             59999999998089277783542999943889565988868876519


No 10 
>TIGR00586 mutt mutator mutT protein; InterPro: IPR003561   MutT is a small bacterial protein (~12-15kDa) involved in the GO system  responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family .    The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair.
Probab=99.94  E-value=1.1e-27  Score=180.06  Aligned_cols=128  Identities=34%  Similarity=0.549  Sum_probs=113.8

Q ss_pred             CCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             86499999999935986999991789888983822573101787488999988887626520244202556652057886
Q gi|254780325|r    7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF   86 (141)
Q Consensus         7 k~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~   86 (141)
                      +|.+-++|++|.|++|+|+|.||..+.++++.|+|||||+|.|||+++|++||++||.||.+....+.  ....|.|+..
T Consensus         2 ~K~~QiavgiIrNe~gei~itrR~~g~~~a~~lEFPGGK~e~GETpeqa~vREl~EEigI~~~~~~l~--e~l~~eyP~~   79 (150)
T TIGR00586         2 MKKLQIAVGIIRNENGEIFITRRAAGAHFANKLEFPGGKIEMGETPEQAVVRELQEEIGITPQHFELF--EKLEYEYPQK   79 (150)
T ss_pred             CCEEEEEEEEEECCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCHHE--EEECCCCCCE
T ss_conf             86067888899818880788744456210002479898138898978977654222001232000000--0101306740


Q ss_pred             EEEEEEEEEEEECCEECCCH--------------------HHEEEECCHHHHCCCC-CCCCCHHHHHHHHH
Q ss_conf             06999999997548376882--------------------3315702778832488-97369899999987
Q gi|254780325|r   87 HLLMPFFVCHCFEGIPQSCE--------------------GQQLQWVALDDLQNYS-MLPADLSLISFLRK  136 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~E--------------------~~~~~Wi~~~el~~~~-~~~~~~~ii~~l~~  136 (141)
                      ++.+++|+|..++|+|...+                    +++.+|+...+|.... |+|+|.++++.|++
T Consensus        80 ~l~l~~~L~~~~~gep~~~~raada~~a~klefpggk~e~g~~~~w~~~~~L~~~~gfppan~~~i~~L~~  150 (150)
T TIGR00586        80 RLTLYVYLVQEWSGEPFGKERAADAHMANKLEFPGGKIEMGEEGEWVAITDLDEERGFPPANAELIQKLRQ  150 (150)
T ss_pred             EEHHHHEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHCC
T ss_conf             00023100143338810224555566654312788602217985178984145567888402689999619


No 11 
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.94  E-value=3.6e-26  Score=171.27  Aligned_cols=112  Identities=32%  Similarity=0.487  Sum_probs=92.7

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE---CCCCCCEE
Q ss_conf             999999935986999991789888983822573101787488999988887626520244202556652---05788606
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS---HPYEKFHL   88 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~---~~~~~~~~   88 (141)
                      |++++|++++|+|||+||..    .+.|.||||++|+|||+++|+.||++||||+++++..+..+..+.   +.++...+
T Consensus         2 v~~a~v~~~~grvLl~rr~~----~~~W~lPGG~vE~gEt~~~a~~REl~EE~Gl~v~~~~l~~~~~~~~~~~~~~~~~~   77 (118)
T cd04690           2 IAAALILVRDGRVLLVRKRG----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV   77 (118)
T ss_pred             EEEEEEEECCCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEECCEEEEEEEEEECCCCCCCEEE
T ss_conf             89999998999899999779----99498996376599799999999998975949860207998999721667999899


Q ss_pred             EEEEEEEEEECCEECC-CHHHEEEECCHHHHCCCCCCCCCH
Q ss_conf             9999999975483768-823315702778832488973698
Q gi|254780325|r   89 LMPFFVCHCFEGIPQS-CEGQQLQWVALDDLQNYSMLPADL  128 (141)
Q Consensus        89 ~~~~~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~~~~~~  128 (141)
                      .+++|.|. .++.+.. .|+++++|++++++.+++++|..+
T Consensus        78 ~~~~~~~~-~~g~~~~~~E~~e~~Wv~~~el~~~~laP~~r  117 (118)
T cd04690          78 RATVYVAE-LTGEPVPAAEIEEIRWVDYDDPADDRLAPLLR  117 (118)
T ss_pred             EEEEEEEE-EECCCCCCCCCCCEEEECHHHCCCCCCCCCCC
T ss_conf             99999999-81884578631002995798976899898667


No 12 
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.94  E-value=3.3e-26  Score=171.52  Aligned_cols=118  Identities=26%  Similarity=0.412  Sum_probs=100.0

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      .|+++|++++|++||+||++.+ .+|+|.||||++|.|||+++||+||++|||||.++...++++..........+++..
T Consensus         4 ~v~avv~~~~g~vLL~~R~~~~-~~g~W~lPGG~vE~gEt~~~aa~REv~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~   82 (125)
T cd04679           4 GCGAAILRDDGKLLLVKRLRAP-EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAP   82 (125)
T ss_pred             EEEEEEEECCCEEEEEEECCCC-CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf             6999999779989999938999-999793988305899899999999999987978585379999856435899659999


Q ss_pred             EEEEEEECCEECC---CHHHEEEECCHHHHCCCCCCCCCHHHH
Q ss_conf             9999975483768---823315702778832488973698999
Q gi|254780325|r   92 FFVCHCFEGIPQS---CEGQQLQWVALDDLQNYSMLPADLSLI  131 (141)
Q Consensus        92 ~~~~~~~~~~~~~---~E~~~~~Wi~~~el~~~~~~~~~~~ii  131 (141)
                      +|.|+..+|++..   .|+.+++|+++++|++ ++.+.++.+|
T Consensus        83 ~f~~~~~~g~~~~~~~~e~~e~~Wf~~d~LP~-~l~~~~r~~i  124 (125)
T cd04679          83 VYLAENFSGEPRLMEPDKLLELGWFALDALPQ-PLTRATRDAV  124 (125)
T ss_pred             EEEEEECCCEEECCCCCEEEEEEEECHHHCCC-CCCHHHHHHH
T ss_conf             99999738878228998146887898889888-6598899974


No 13 
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.94  E-value=4.2e-26  Score=170.87  Aligned_cols=121  Identities=26%  Similarity=0.422  Sum_probs=92.3

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC--EEE
Q ss_conf             999999935986999991789888983822573101787488999988887626520244202556652057886--069
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF--HLL   89 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~--~~~   89 (141)
                      +|+++|++++|+|||+||++++ .+|+|+||||++|+|||+++||+||++||||+.+...++.......+++.+.  ++.
T Consensus         3 aV~~vI~~~~g~vLl~kR~~~~-~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T cd04681           3 AVGVLILNEDGELLVVRRAREP-GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL   81 (130)
T ss_pred             EEEEEEEECCCEEEEEEECCCC-CCCCEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf             7999999689999999968998-899092988206599999999989999986954688689999764554698238999


Q ss_pred             EEEEEEEEECCE--ECCCHHHEEEECCHHHHCCCCC-CCCCHHHHHH
Q ss_conf             999999975483--7688233157027788324889-7369899999
Q gi|254780325|r   90 MPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNYSM-LPADLSLISF  133 (141)
Q Consensus        90 ~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~~~-~~~~~~ii~~  133 (141)
                      .++|.|+..++.  +...|+.+++|++++|++..++ +|+.+..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~afp~~~~~i~~  128 (130)
T cd04681          82 DLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVER  128 (130)
T ss_pred             EEEEEEEECCCCCCCCCCCEEEEEEECHHHCCHHHCCCHHHHHHHHH
T ss_conf             99999998798747999825168998687897102598669999998


No 14 
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.94  E-value=1.1e-25  Score=168.57  Aligned_cols=110  Identities=25%  Similarity=0.409  Sum_probs=92.1

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCCCCEEEE
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520-578860699
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH-PYEKFHLLM   90 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~-~~~~~~~~~   90 (141)
                      |+|+++++++++|||+||++.+..+|+|+||||++|+|||+++||+||++|||||.+.+..+.......+ .....+++.
T Consensus         1 vav~vvl~~~~~vLL~~R~~~~~~~G~W~~PGG~ve~GEt~~~aa~REl~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~   80 (120)
T cd04683           1 VAVYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG   80 (120)
T ss_pred             CEEEEEEEECCEEEEEECCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEECCCCCCCEEEE
T ss_conf             98999999399999997789999999798975887799999999999988876938873408999988326899879999


Q ss_pred             EEEEEEEECCEECC---CHHHEEEECCHHHHCCC
Q ss_conf             99999975483768---82331570277883248
Q gi|254780325|r   91 PFFVCHCFEGIPQS---CEGQQLQWVALDDLQNY  121 (141)
Q Consensus        91 ~~~~~~~~~~~~~~---~E~~~~~Wi~~~el~~~  121 (141)
                      ++|.|+.++|+|..   .|+++++|++++++++.
T Consensus        81 ~~f~~~~~~g~p~~~~p~e~~~~~Wf~~deLP~~  114 (120)
T cd04683          81 LFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDD  114 (120)
T ss_pred             EEEEEEEECCEEECCCCCCEEEEEEECHHHCCCC
T ss_conf             9999997478986189981458999998899886


No 15 
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.93  E-value=2e-25  Score=167.01  Aligned_cols=119  Identities=25%  Similarity=0.399  Sum_probs=94.6

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      .|+++|++++|+|||+||...+ ..|+|++|||++|+|||+++||+||++|||||+++..++.++....+.....+++..
T Consensus         4 gV~~iv~~~~g~vLL~rR~~~~-~~g~W~lPgG~ve~GEs~~~Aa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~h~i~~   82 (129)
T cd04678           4 GVGVFVLNPKGKVLLGKRKGSH-GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVTI   82 (129)
T ss_pred             EEEEEEEECCCEEEEEEECCCC-CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEE
T ss_conf             7999999899959999947899-999498981040589889999999999987985252499999887757789469999


Q ss_pred             EEEEEEECCEEC--C---CHHHEEEECCHHHHCCC-CCCCCCHHHH
Q ss_conf             999997548376--8---82331570277883248-8973698999
Q gi|254780325|r   92 FFVCHCFEGIPQ--S---CEGQQLQWVALDDLQNY-SMLPADLSLI  131 (141)
Q Consensus        92 ~~~~~~~~~~~~--~---~E~~~~~Wi~~~el~~~-~~~~~~~~ii  131 (141)
                      +|.|+..+++..  .   .|+++++|+++++|+++ +++.+.+.++
T Consensus        83 ~f~~~~~~g~~~~~~~ep~e~~~~~Wf~~deLP~l~pl~~p~~~~~  128 (129)
T cd04678          83 FVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVDPLFLPLKNLF  128 (129)
T ss_pred             EEEEEEECCCCCCCCCCCHHCCEEEEECHHHCCCCCCCCHHHHHHH
T ss_conf             9999983782364779932401308999899869863417889964


No 16 
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.93  E-value=4.7e-25  Score=164.86  Aligned_cols=116  Identities=27%  Similarity=0.383  Sum_probs=93.0

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC---CCEE
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520578---8606
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE---KFHL   88 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~---~~~~   88 (141)
                      +.|++++.++|+|||+||+.    .|+|.+|||++|+|||+++||+||++||||+.+++.+++.+....+...   ..++
T Consensus         3 v~V~~vv~~dg~vLL~rr~~----~g~W~lPGG~ve~gEt~~eaa~REv~EETGl~v~~~~l~~v~~~~~~~~~~~~~~~   78 (123)
T cd04672           3 VDVRAAIFKDGKILLVREKS----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQV   78 (123)
T ss_pred             CEEEEEEEECCEEEEEEECC----CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCEEE
T ss_conf             20999999899999999889----99398984663799899999999999977909998589999835432799952499


Q ss_pred             EEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCHHHH
Q ss_conf             99999999754837688-23315702778832488973698999
Q gi|254780325|r   89 LMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADLSLI  131 (141)
Q Consensus        89 ~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~~ii  131 (141)
                      ...+|.|+..++++++. |+.+++|+++++++++.+-......|
T Consensus        79 ~~~~f~~~~~~g~~~~~~E~~e~~Wf~~deLP~L~~~~~t~~~i  122 (123)
T cd04672          79 YKLFFLCEILGGEFKPNIETSEVGFFALDDLPPLSEKRNTEEQI  122 (123)
T ss_pred             EEEEEEEEECCCCCCCCCHHHEEEEECHHHCCCCCCCCCCHHHH
T ss_conf             99999999878938889456436798888998787569897991


No 17 
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.93  E-value=4.4e-25  Score=165.02  Aligned_cols=119  Identities=29%  Similarity=0.417  Sum_probs=95.7

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC---CCC--
Q ss_conf             999999999359869999917898889838225731017874889999888876265202442025566520---578--
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH---PYE--   84 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~---~~~--   84 (141)
                      +..|+++|++.+|++||++|+.    .|+|.||||++|+|||+++||.||++|||||+++...+........   .+.  
T Consensus         2 ~~gv~~vv~~~~g~vLL~~r~~----~g~W~lPGG~ve~GE~~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~   77 (129)
T cd04676           2 LPGVTAVVRDDEGRVLLIRRSD----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG   77 (129)
T ss_pred             CCEEEEEEEECCCEEEEEEECC----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEECCCC
T ss_conf             4779999997998099999869----996989925741998989988899999769577872799997264421627999


Q ss_pred             -CCEEEEEEEEEEEECCEECC--CHHHEEEECCHHHHCCCCCCCCCHHHHH
Q ss_conf             -86069999999975483768--8233157027788324889736989999
Q gi|254780325|r   85 -KFHLLMPFFVCHCFEGIPQS--CEGQQLQWVALDDLQNYSMLPADLSLIS  132 (141)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~~~~~~~~ii~  132 (141)
                       ..+...++|.|+..++++..  .|+.+++|++++++++++++|+.+..++
T Consensus        78 ~~~~~~~~~f~~~~~~~~~~~~~~E~~e~~Wf~~delp~l~~~p~~R~~i~  128 (129)
T cd04676          78 DVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID  128 (129)
T ss_pred             CEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECHHHCCCCCCCCCCHHHCC
T ss_conf             869999999998872884559997178889989989969999945043337


No 18 
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.93  E-value=4e-25  Score=165.25  Aligned_cols=108  Identities=23%  Similarity=0.332  Sum_probs=88.3

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      ++|++|+.++|||||+||+..|. .|+|++|||++|.|||+++||+||++||||+.++...+.++.+    +++.+....
T Consensus        14 ~~v~~ii~~~~kILLvrR~~~P~-~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~----~p~~~~v~~   88 (130)
T cd04511          14 IIVGCVPEWEGKVLLCRRAIEPR-HGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS----VPHISQVYM   88 (130)
T ss_pred             EEEEEEEEECCEEEEEECCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC----CCCCCEEEE
T ss_conf             89999998699999994068999-9958689748658989999999899874097899626999945----787767999


Q ss_pred             EEEEEEECCEECCC-HHHEEEECCHHHHC--CCCCC
Q ss_conf             99999754837688-23315702778832--48897
Q gi|254780325|r   92 FFVCHCFEGIPQSC-EGQQLQWVALDDLQ--NYSML  124 (141)
Q Consensus        92 ~~~~~~~~~~~~~~-E~~~~~Wi~~~el~--~~~~~  124 (141)
                      +|.|+..+++++.+ |..+++|+++++++  ++.|+
T Consensus        89 ~f~~~~~~g~~~~~~E~~e~~wf~~delP~~~lAf~  124 (130)
T cd04511          89 FYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFP  124 (130)
T ss_pred             EEEEEEECCCCCCCCCEEEEEEECHHHCCHHHCCHH
T ss_conf             999999127679995201677887889970654516


No 19 
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.92  E-value=1.4e-24  Score=162.06  Aligned_cols=116  Identities=29%  Similarity=0.392  Sum_probs=91.7

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC----CEEE
Q ss_conf             999993598699999178988898382257310178748899998888762652024420255665205788----6069
Q gi|254780325|r   14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK----FHLL   89 (141)
Q Consensus        14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~----~~~~   89 (141)
                      |++|+.++|+|||+||.+.+ ..|+|+||||++|+|||+++||+||++|||||.++..+++......+..++    .+.+
T Consensus         3 ~~avi~~~~~vLL~rr~~~~-~~g~W~lPGG~ve~gEt~~~aa~REv~EETGl~v~~~~~l~~~~~~~~~~~~~~~~~~v   81 (128)
T cd04684           3 AYAVIPRDGKLLLIQKNGGP-YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHL   81 (128)
T ss_pred             EEEEEEECCEEEEEEECCCC-CCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCEEEEEE
T ss_conf             99999939999999977899-89829898560779989999999999987293788633889999999789997767999


Q ss_pred             EEEEEEEEECCEECCC----HHHEEEECCHHHHCCCCCCCCCHHH
Q ss_conf             9999999754837688----2331570277883248897369899
Q gi|254780325|r   90 MPFFVCHCFEGIPQSC----EGQQLQWVALDDLQNYSMLPADLSL  130 (141)
Q Consensus        90 ~~~~~~~~~~~~~~~~----E~~~~~Wi~~~el~~~~~~~~~~~i  130 (141)
                      .++|.|+..++.+...    |..+++|++++++.+..+.|..+..
T Consensus        82 ~~~f~~~~~~g~~~~~~~~ee~~e~~W~~~del~e~~~~P~~~~~  126 (128)
T cd04684          82 CVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWA  126 (128)
T ss_pred             EEEEEEEECCCCCCCCCCCCCEEEEEEECHHHHHCCCCCHHHHHH
T ss_conf             999999986894056899983059999588994231279478786


No 20 
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.92  E-value=4.6e-24  Score=159.14  Aligned_cols=114  Identities=27%  Similarity=0.415  Sum_probs=89.0

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      +|+++|++++|+|||+||++.+. .|+|+||||++|+|||+++||+||++||||+++++..++.+..     ...++..+
T Consensus         2 vV~avi~~~~g~vLLv~r~~~~~-~g~W~lPGG~vE~GEt~eeaa~REv~EETGl~v~~~~l~~v~~-----~~~~~~~~   75 (123)
T cd04671           2 IVAAVILNNQGEVLLIQEAKRSC-RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEE-----QGGSWFRF   75 (123)
T ss_pred             EEEEEEEECCCEEEEEEECCCCC-CCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-----CCCEEEEE
T ss_conf             89999998899899999658999-9959798018049989999999999997498889777999992-----69809999


Q ss_pred             EEEEEEECCEECC-----CHHHEEEECCHHHHCCCCCCCCCHHHHHHH
Q ss_conf             9999975483768-----823315702778832488973698999999
Q gi|254780325|r   92 FFVCHCFEGIPQS-----CEGQQLQWVALDDLQNYSMLPADLSLISFL  134 (141)
Q Consensus        92 ~~~~~~~~~~~~~-----~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l  134 (141)
                      +|.|+...+++..     .|..+++|+++++|+. ++.  .+.++..+
T Consensus        76 ~f~~~~~~G~l~~~~~~~~E~~ea~Wf~~deLP~-pl~--~~~~~~~~  120 (123)
T cd04671          76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPL-PLR--AHDILSLI  120 (123)
T ss_pred             EEEEEEECCEECCCCCCCCCEEEEEEECHHHCCC-CCC--CCHHHHHH
T ss_conf             9999992765116899998779989988899868-764--04345463


No 21 
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.91  E-value=5e-24  Score=158.93  Aligned_cols=110  Identities=26%  Similarity=0.361  Sum_probs=87.3

Q ss_pred             EEEEEEECCCEEEEEEECCCCC--CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf             9999993598699999178988--89838225731017874889999888876265202442025566520578860699
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKS--HGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM   90 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~--~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~   90 (141)
                      |+++|+.++|++|+++|++++.  +||+|+||||++|+|||+++|+.||++||+|+++....+.....+..  .......
T Consensus         3 ~a~al~~~~g~vLl~~R~~~~~~~~pg~W~~pGG~~e~~E~~~~~~~RE~~EE~gl~~~~~~~~~~~~~~~--~~~~~~~   80 (122)
T cd04682           3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS--ASPPGTE   80 (122)
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEECC--CCCCCEE
T ss_conf             79999967997999989999999989938799666679989999999999998888567000202785215--7899479


Q ss_pred             EEEEEEEECC---EECCCHHHEEEECCHHHHCCCCCC
Q ss_conf             9999997548---376882331570277883248897
Q gi|254780325|r   91 PFFVCHCFEG---IPQSCEGQQLQWVALDDLQNYSML  124 (141)
Q Consensus        91 ~~~~~~~~~~---~~~~~E~~~~~Wi~~~el~~~~~~  124 (141)
                      ++|.+.....   .+.+.|+++++|++++|+.+.+.+
T Consensus        81 ~~F~~~l~~~~~~~~~~~Egq~~~W~~~eEll~~~~a  117 (122)
T cd04682          81 HVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHEDA  117 (122)
T ss_pred             EEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHCCCC
T ss_conf             9999840056315356873307687459999648366


No 22 
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.91  E-value=8.5e-24  Score=157.60  Aligned_cols=113  Identities=30%  Similarity=0.426  Sum_probs=89.5

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE------CCCCC
Q ss_conf             999999935986999991789888983822573101787488999988887626520244202556652------05788
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS------HPYEK   85 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~------~~~~~   85 (141)
                      +.|++|+.++|++||+||.+++  +.+|.||||++|+|||+++|++||++||||++++..+++.+....      +.+.+
T Consensus         2 ~~a~AvI~~~~~vLL~r~~~~~--~~~w~lPGG~ve~GEt~~~Al~RE~~EEtGl~v~v~~l~~v~e~~~~~~~~~~~~~   79 (128)
T cd04687           2 NSAKAVIIKNDKILLIKHHDDG--GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGH   79 (128)
T ss_pred             CEEEEEEEECCEEEEEEECCCC--CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCCCCCCCC
T ss_conf             4799999989999999983699--81698988667699799999999887863967885608999970132556678885


Q ss_pred             CEEEEEEEEEEEECCEECCC------HHHEEEECCHHHHCCCCCCCC
Q ss_conf             60699999999754837688------233157027788324889736
Q gi|254780325|r   86 FHLLMPFFVCHCFEGIPQSC------EGQQLQWVALDDLQNYSMLPA  126 (141)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~------E~~~~~Wi~~~el~~~~~~~~  126 (141)
                      +|.+.++|.|+..++.+...      +..+++|+++++|.++++.|+
T Consensus        80 ~h~v~~~f~~~~~~g~~~~~~~~~d~~~~~~~Wv~ldeL~~~~l~P~  126 (128)
T cd04687          80 FHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS  126 (128)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCC
T ss_conf             49999999999868954667778876657899804999566988998


No 23 
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.91  E-value=8.2e-24  Score=157.70  Aligned_cols=121  Identities=27%  Similarity=0.434  Sum_probs=89.3

Q ss_pred             CCEEEEEE-EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE--C--
Q ss_conf             86499999-999935986999991789888983822573101787488999988887626520244202556652--0--
Q gi|254780325|r    7 KKILLVVA-CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS--H--   81 (141)
Q Consensus         7 k~~~~vv~-~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~--~--   81 (141)
                      .+.+.+.| ++|++++|+|||++|+.    +|.|+||||++|+|||+++||+||++|||||.+...++++.....  +  
T Consensus         3 ~p~~~~g~~~vv~~~~g~vLL~~r~~----~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~   78 (132)
T cd04677           3 RPLILVGAGVILLNEQGEVLLQKRSD----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVK   78 (132)
T ss_pred             CCEEEEEEEEEEEECCCEEEEEEECC----CCCEECCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEC
T ss_conf             86778579999998999899999889----99498984276699799999999999986955352479999778645544


Q ss_pred             -CCC-CCEEEEEEEEEEEECCEEC--CCHHHEEEECCHHHHCCCCCCCCCHHHHH
Q ss_conf             -578-8606999999997548376--88233157027788324889736989999
Q gi|254780325|r   82 -PYE-KFHLLMPFFVCHCFEGIPQ--SCEGQQLQWVALDDLQNYSMLPADLSLIS  132 (141)
Q Consensus        82 -~~~-~~~~~~~~~~~~~~~~~~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~  132 (141)
                       +.. ..+....+|.|...++.+.  ..|+.+++|+++++++++ +.|.++++|+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~Wf~~delp~l-~~p~~r~~ie  132 (132)
T cd04677          79 PNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPEL-INPQHKEMLQ  132 (132)
T ss_pred             CCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEECHHHCCCC-CCHHHHHHCC
T ss_conf             89984799999999986258756799970158999829998344-8922575609


No 24 
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.91  E-value=9.7e-24  Score=157.26  Aligned_cols=110  Identities=20%  Similarity=0.325  Sum_probs=85.7

Q ss_pred             EEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf             99999999359869999917898889838225731017874889999888876265202442025566520578860699
Q gi|254780325|r   11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM   90 (141)
Q Consensus        11 ~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~   90 (141)
                      .+++++|++++|++||+||...+ ..|+|.||||++|+|||+++||+||++||||+.+.+.++++.....++.+. ....
T Consensus        14 ~AagavV~n~~g~vLLvrr~~~p-~~g~W~lPgG~vE~GEt~~eAa~REv~EETGl~v~~~~~l~~~~~~~~~g~-~~~~   91 (142)
T cd04700          14 RAAGAVILNERNDVLLVQEKGGP-KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV-LVLR   91 (142)
T ss_pred             EEEEEEEEECCCEEEEEEECCCC-CCCEEECCEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCC-EEEE
T ss_conf             49999999699989999976899-899897983338799699999999999966978888889899946807998-8999


Q ss_pred             EEEEEEEECCE--EC-CCHHHEEEECCHHHHCCCC
Q ss_conf             99999975483--76-8823315702778832488
Q gi|254780325|r   91 PFFVCHCFEGI--PQ-SCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        91 ~~~~~~~~~~~--~~-~~E~~~~~Wi~~~el~~~~  122 (141)
                      ++|.|+...+.  |+ ..|..+++|++++|++++.
T Consensus        92 ~~fl~~~~~~~~~p~~~dE~~e~~Wf~~~El~~L~  126 (142)
T cd04700          92 HVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLY  126 (142)
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHH
T ss_conf             99999974883256999876788998599955545


No 25 
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.90  E-value=3.9e-23  Score=153.76  Aligned_cols=112  Identities=23%  Similarity=0.309  Sum_probs=86.9

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC-------
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520578-------
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE-------   84 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~-------   84 (141)
                      .|.++|.+.+|++||++|.+.|. +|+|.+|||+++.|||+++|++||++||||+.+++.+...++.+.|.|+       
T Consensus        14 ~V~~vI~n~~g~iLL~kR~~~p~-~g~W~~PGG~i~~gEt~~~a~~Re~~eE~Gl~i~~~~~~~~Gv~eh~y~d~~~~~~   92 (144)
T cd03430          14 SIDLIVENEDGQYLLGKRTNRPA-QGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD   92 (144)
T ss_pred             EEEEEEECCCCCEEEEECCCCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCCCCCCC
T ss_conf             99999997999699998169988-99498983447799799999999999974971640344897758998267777898


Q ss_pred             -CCEEEEEEEEEEEECCEECC--CHHHEEEECCHHHHCCCCCC
Q ss_conf             -86069999999975483768--82331570277883248897
Q gi|254780325|r   85 -KFHLLMPFFVCHCFEGIPQS--CEGQQLQWVALDDLQNYSML  124 (141)
Q Consensus        85 -~~~~~~~~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~~~  124 (141)
                       ..|+++..|.|+..++++..  .||++++|++++++.+.+..
T Consensus        93 ~~~H~V~l~y~~~~~~~e~~~~ddeh~e~~Wf~~del~~~~~v  135 (144)
T cd03430          93 FSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDV  135 (144)
T ss_pred             CCEEEEEEEEEEEECCCCCCCCHHHCCEEEEECHHHHHCCCCC
T ss_conf             5309999999999558975599457006699679995217766


No 26 
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.90  E-value=7.4e-23  Score=152.19  Aligned_cols=125  Identities=24%  Similarity=0.273  Sum_probs=89.0

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCE-EEE
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520578860-699
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH-LLM   90 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~-~~~   90 (141)
                      +|+.-.++.+.+|||.||++  ..+|.|+||||++|+|||+.+||.||++|||||++............+...+.. ...
T Consensus         4 ~v~~~~~~~~~~~LlLkR~~--~~~g~W~~p~G~iE~gEs~~eaA~REl~EETGl~~~~l~~~~~~~~~y~~~~~~i~~~   81 (131)
T cd04695           4 GVLLRSLDKETKVLLLKRVK--TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMA   81 (131)
T ss_pred             EEEEEEECCCCEEEEEECCC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEE
T ss_conf             99999989988899997689--9999586982334699999999999888977877434771242688998489769999


Q ss_pred             EEEEEEEECC-EEC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             9999997548-376-88233157027788324889736989999998721
Q gi|254780325|r   91 PFFVCHCFEG-IPQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA  138 (141)
Q Consensus        91 ~~~~~~~~~~-~~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~  138 (141)
                      .+|.+...+. .+. ..||.+++|++++++.++..+|..+.++..+++|+
T Consensus        82 ~~f~~~~~~~~~v~ls~Eh~~y~W~~~eea~~ll~~~~~r~~l~~~~~~~  131 (131)
T cd04695          82 PVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWRYF  131 (131)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHC
T ss_conf             99999938999782562032089718999996769967899999999759


No 27 
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.90  E-value=7.4e-23  Score=152.18  Aligned_cols=115  Identities=22%  Similarity=0.307  Sum_probs=82.4

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      .|+++|++++|++|+++|...  ..|.|+||||++|+|||+++||+||++||||++++...++..... +++... ....
T Consensus         4 gv~avi~n~~~~vLlv~~~~~--~~g~W~lPgG~ve~GEt~~eaa~REv~EEtGl~v~~~~~l~~~~~-~~~~~~-~~~~   79 (127)
T cd04670           4 GVGGLVLNEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHA-HPGAFG-KSDL   79 (127)
T ss_pred             EEEEEEEECCCEEEEEEECCC--CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEC-CCCCCC-CEEE
T ss_conf             899999979999999997789--999589982031599799999999999987945689758989960-798889-7179


Q ss_pred             EEEEE--EECCEE--CCCHHHEEEECCHHHHCCCCCCCCCHHH
Q ss_conf             99999--754837--6882331570277883248897369899
Q gi|254780325|r   92 FFVCH--CFEGIP--QSCEGQQLQWVALDDLQNYSMLPADLSL  130 (141)
Q Consensus        92 ~~~~~--~~~~~~--~~~E~~~~~Wi~~~el~~~~~~~~~~~i  130 (141)
                      +|.|.  ..++.+  ...|..+++|++++|+.++++.+...++
T Consensus        80 ~f~~~~~~~~~~i~~~~~Ei~e~~W~~~~El~~~p~~~~~~r~  122 (127)
T cd04670          80 YFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVNRL  122 (127)
T ss_pred             EEEEEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCHHHHHH
T ss_conf             9999998188877889850578788369998708870466665


No 28 
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.90  E-value=1.1e-22  Score=151.28  Aligned_cols=108  Identities=27%  Similarity=0.412  Sum_probs=90.9

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      .|++|+.++||+||++|..++  .+.|.+|||++|+|||+.+|+.||++||||+.+++..++++..+..+..+.++..++
T Consensus         2 tVaavv~~~gr~LLV~~~~~~--~~~~~~PgG~~e~gE~~~~a~~RE~~EEtG~~v~~~~~~g~~~~~~~~~~~~ylr~~   79 (134)
T cd03675           2 TVAAVVERDGRFLLVEEETDG--GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFA   79 (134)
T ss_pred             EEEEEEEECCEEEEEEEECCC--CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEEE
T ss_conf             899999979999999996599--972989822788998999999999999757767761799999875589996189999


Q ss_pred             EEEEEECCEEC---CCHHHEEEECCHHHHCCCC
Q ss_conf             99997548376---8823315702778832488
Q gi|254780325|r   93 FVCHCFEGIPQ---SCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        93 ~~~~~~~~~~~---~~E~~~~~Wi~~~el~~~~  122 (141)
                      |.|+..++.+.   ..|..+.+|++++|+..+.
T Consensus        80 F~~~~~~~~~~~~~D~eI~~a~W~tldEi~~~~  112 (134)
T cd03675          80 FAAELLEHLPDQPLDSGIVRAHWLTLEEILALA  112 (134)
T ss_pred             EEEEECCCCCCCCCCCCCEEEEECCHHHHHHHH
T ss_conf             999977899888999860241727899986525


No 29 
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.90  E-value=4.3e-23  Score=153.53  Aligned_cols=107  Identities=31%  Similarity=0.472  Sum_probs=83.6

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf             99999359869999917898889838225731017874889999888876265202442025566520578860699999
Q gi|254780325|r   14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFF   93 (141)
Q Consensus        14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
                      +++|++++|+|||+||+     .|.|.||||++|+|||+.+||.||++|||||.+....++  ..+.  ..+  ...++|
T Consensus         3 A~vi~~~~g~vLLvrr~-----~g~W~lPGG~ve~GEt~~~Aa~RE~~EEtGl~~~~~~~~--~~~~--~~~--~~~~~f   71 (112)
T cd04667           3 ATVICRRGGRVLLVRKS-----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL--FHVD--GGS--TRHHVF   71 (112)
T ss_pred             EEEEEECCCEEEEEEEC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE--EEEE--CCC--EEEEEE
T ss_conf             89999709999999918-----993889874888998999999999999869376546999--9990--898--899999


Q ss_pred             EEEEECC-EECC-CHHHEEEECCHHHHCCCCCCCCCHHHH
Q ss_conf             9997548-3768-823315702778832488973698999
Q gi|254780325|r   94 VCHCFEG-IPQS-CEGQQLQWVALDDLQNYSMLPADLSLI  131 (141)
Q Consensus        94 ~~~~~~~-~~~~-~E~~~~~Wi~~~el~~~~~~~~~~~ii  131 (141)
                      .+....+ .+.+ .|+.+++||+++++.+++++|+++.++
T Consensus        72 ~~~~~~~~~~~~~~E~~e~rW~~~del~el~~~~~~R~iv  111 (112)
T cd04667          72 VASVPPSAQPKPSNEIADCRWLSLDALGDLNASAATRLIV  111 (112)
T ss_pred             EEEECCCCCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHC
T ss_conf             9997588641899742147998699963688994672101


No 30 
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.90  E-value=1.2e-22  Score=150.88  Aligned_cols=110  Identities=27%  Similarity=0.434  Sum_probs=87.4

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE--ECCCCCCEEEE
Q ss_conf             9999993598699999178988898382257310178748899998888762652024420255665--20578860699
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFI--SHPYEKFHLLM   90 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~--~~~~~~~~~~~   90 (141)
                      -|++|+.++|+||++++..    .++|.+|||++|+|||+++|++||++||||+.++..+++++...  .+...+.+...
T Consensus         3 rv~aii~~~~~vLl~~~~~----~~~w~lPGG~ve~gEt~~eA~~RE~~EEtGl~v~~~~l~~v~e~~f~~~~~~~h~i~   78 (126)
T cd04688           3 RAAAIIIHNGKLLVQKNPD----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIE   78 (126)
T ss_pred             EEEEEEEECCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCEEEE
T ss_conf             9999999899999999779----998999853436998999999888888759678824699999768872997547999


Q ss_pred             EEEEEEEECCEECCC---------HHHEEEECCHHHHCCCCCCCC
Q ss_conf             999999754837688---------233157027788324889736
Q gi|254780325|r   91 PFFVCHCFEGIPQSC---------EGQQLQWVALDDLQNYSMLPA  126 (141)
Q Consensus        91 ~~~~~~~~~~~~~~~---------E~~~~~Wi~~~el~~~~~~~~  126 (141)
                      ++|.|+..++.+...         +..+++|++++++.++++.|.
T Consensus        79 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~Wv~ldeL~~l~l~P~  123 (126)
T cd04688          79 FYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE  123 (126)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC
T ss_conf             999999978855778764327798799999847999276887970


No 31 
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.89  E-value=1.2e-22  Score=150.98  Aligned_cols=120  Identities=25%  Similarity=0.341  Sum_probs=90.3

Q ss_pred             EEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE----EEEECCCC
Q ss_conf             49999999993598699999178988898382257310178748899998888762652024420255----66520578
Q gi|254780325|r    9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL----TFISHPYE   84 (141)
Q Consensus         9 ~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~----~~~~~~~~   84 (141)
                      .+.|+ ....+++++|||+||+..  ++|+|++|||++|+|||+.+||.||++|||||.+.....+..    ..+.....
T Consensus         3 ~v~vv-~~~~~~~~~vLll~Rs~~--~~G~W~~p~G~ve~gE~~~~aA~REi~EETGl~~~~~~~~~~~~~~~~~~~~~~   79 (129)
T cd04664           3 SVLVV-PYRLTGEGRVLLLRRSDK--YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN   79 (129)
T ss_pred             EEEEE-EEEECCCCEEEEEECCCC--CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCC
T ss_conf             89999-999889998999987999--989391987322899799999999999988898301799861458999996589


Q ss_pred             CCEEEEEEEEEEEECCE-EC-CCHHHEEEECCHHHHCCCCCCCCCHHHH
Q ss_conf             86069999999975483-76-8823315702778832488973698999
Q gi|254780325|r   85 KFHLLMPFFVCHCFEGI-PQ-SCEGQQLQWVALDDLQNYSMLPADLSLI  131 (141)
Q Consensus        85 ~~~~~~~~~~~~~~~~~-~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii  131 (141)
                      +..+..++|.+...+.. +. ..||.+++|++++++.++..+++++.++
T Consensus        80 ~~~~~~~~f~~~v~~~~~v~l~~EH~~~~W~~~~ea~~~l~~~~~r~a~  128 (129)
T cd04664          80 GRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW  128 (129)
T ss_pred             CEEEEEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHH
T ss_conf             8589999999986789877687444721883699999765993366875


No 32 
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.89  E-value=1.9e-22  Score=149.78  Aligned_cols=118  Identities=33%  Similarity=0.553  Sum_probs=95.1

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      +|+++|++.++++||+||...  .+|+|.||||++|+|||+++||+||++||||+++......+...........+...+
T Consensus         2 ~~~~ii~~~~~~vLl~~r~~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~   79 (123)
T cd02883           2 AVGAVILDEDGRVLLVRRADS--PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVF   79 (123)
T ss_pred             EEEEEEEECCCEEEEEEECCC--CCCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEE
T ss_conf             999999979999999994289--989599981431599898997566788985945677589999998777899669999


Q ss_pred             EEEEEEECCEE---CCCHHHEEEECCHHHHCCCCCCCCCHHHH
Q ss_conf             99999754837---68823315702778832488973698999
Q gi|254780325|r   92 FFVCHCFEGIP---QSCEGQQLQWVALDDLQNYSMLPADLSLI  131 (141)
Q Consensus        92 ~~~~~~~~~~~---~~~E~~~~~Wi~~~el~~~~~~~~~~~ii  131 (141)
                      +|.|+..++.+   ...|+.+++|++++++.++.+.+.+++.+
T Consensus        80 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~  122 (123)
T cd02883          80 VFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSPALRPAL  122 (123)
T ss_pred             EEEEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCHHHHHHH
T ss_conf             9999995895212898668999998499913499983675965


No 33 
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.89  E-value=1.5e-22  Score=150.47  Aligned_cols=114  Identities=29%  Similarity=0.329  Sum_probs=86.4

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      |+++|++.+|+|||+||+.    ++.|+||||++|+|||+++||.||++|||||.+.....+ ...+.+........+++
T Consensus         3 v~~vv~~~~g~vLL~rr~~----~~~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~l-~~~~~~~~~~~~~~~~~   77 (120)
T cd04680           3 ARAVVTDADGRVLLVRHTY----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSASGSWDHVIV   77 (120)
T ss_pred             EEEEEECCCCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE-EEEEECCCCCCCEEEEE
T ss_conf             9999992999099998679----991999954716998999999999999869755515479-99982589997539999


Q ss_pred             EEEEEECCEEC--CCHHHEEEECCHHHHCCCCCCCCCHHHHH
Q ss_conf             99997548376--88233157027788324889736989999
Q gi|254780325|r   93 FVCHCFEGIPQ--SCEGQQLQWVALDDLQNYSMLPADLSLIS  132 (141)
Q Consensus        93 ~~~~~~~~~~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~  132 (141)
                      |.|....+...  ..|+.+++|+++++|++ ++.|+++..|.
T Consensus        78 f~~~~~~~~~~~~~~E~~e~~Wf~~d~LPe-~l~p~~~~~i~  118 (120)
T cd04680          78 FRARADTQPVIRPSHEISEARFFPPDALPE-PTTPATRRRIA  118 (120)
T ss_pred             EEEEECCCCCCCCCHHHHCEEEECHHHCCC-CCCHHHHHHHH
T ss_conf             999824888679983674113988889888-78977999975


No 34 
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A  hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.89  E-value=2.1e-22  Score=149.62  Aligned_cols=120  Identities=28%  Similarity=0.405  Sum_probs=89.7

Q ss_pred             EEEEEEEECC---CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC--CC
Q ss_conf             9999999359---869999917898889838225731017874889999888876265202442025566520578--86
Q gi|254780325|r   12 VVACAVFEPG---GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE--KF   86 (141)
Q Consensus        12 vv~~~ii~~~---~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~--~~   86 (141)
                      ++++++++..   .+|||++|.+    .|.|.||||++|+|||+.+||.||++|||||++.....++...+.....  ..
T Consensus         3 aaG~vv~r~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEs~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~   78 (131)
T cd03673           3 AAGGVVFRGSDGGIEVLLIHRPR----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRV   78 (131)
T ss_pred             EEEEEEEEECCCCEEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCEE
T ss_conf             89999997169967999999589----99799982452799799999999999987953898427116689973499607


Q ss_pred             EEEEEEEEEEEECCEE--C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             0699999999754837--6-88233157027788324889736989999998
Q gi|254780325|r   87 HLLMPFFVCHCFEGIP--Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFLR  135 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~~--~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~  135 (141)
                      +..+++|.++..++.+  . ..|+.+++|++++++.++..+|.++.++....
T Consensus        79 ~~~v~~f~~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~l~~~~~r~il~~al  130 (131)
T cd03673          79 HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL  130 (131)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHH
T ss_conf             8899999999967953207886541799921999977659987999999972


No 35 
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.89  E-value=2.7e-22  Score=148.97  Aligned_cols=119  Identities=28%  Similarity=0.303  Sum_probs=83.6

Q ss_pred             EEEEEEEE-CCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE------EE---C
Q ss_conf             99999993-59869999917898889838225731017874889999888876265202442025566------52---0
Q gi|254780325|r   12 VVACAVFE-PGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF------IS---H   81 (141)
Q Consensus        12 vv~~~ii~-~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~------~~---~   81 (141)
                      ++.++|++ ++|+|||++|++    .|.|.+|||++|+|||+.+||+||++|||||+++.........      +.   .
T Consensus         4 ~~~~~Vv~~~~g~vLLv~~~~----~g~W~lPGG~ve~gEt~~~Aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   79 (138)
T cd03674           4 TASAFVVNPDRGKVLLTHHRK----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPK   79 (138)
T ss_pred             EEEEEEEECCCCEEEEEEECC----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCCC
T ss_conf             799999978999899998659----9929899658679889999999999998798732225604340578987668567


Q ss_pred             CCCCCEE-EEEEEEEEEECCEE--C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHH
Q ss_conf             5788606-99999999754837--6-8823315702778832488973698999999
Q gi|254780325|r   82 PYEKFHL-LMPFFVCHCFEGIP--Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFL  134 (141)
Q Consensus        82 ~~~~~~~-~~~~~~~~~~~~~~--~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l  134 (141)
                      .....++ ....|.+....+.+  . ..|+.+++|++++++.++++++..++++...
T Consensus        80 ~~~~~~~h~~v~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~rr~i~~a  136 (138)
T cd03674          80 RGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKA  136 (138)
T ss_pred             CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHH
T ss_conf             888876999999999962888666899732102998599930258997699999997


No 36 
>PRK09438 ntpA dATP pyrophosphohydrolase; Provisional
Probab=99.89  E-value=1.9e-22  Score=149.79  Aligned_cols=133  Identities=26%  Similarity=0.340  Sum_probs=97.9

Q ss_pred             CCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE-----
Q ss_conf             864478649999999993598699999178988898382257310178748899998888762652024420255-----
Q gi|254780325|r    2 IDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL-----   76 (141)
Q Consensus         2 ~~~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~-----   76 (141)
                      |.|.-|.++ +|.++|.+.++++||++|..+   ||+|++|||++|+|||+.+||.||++|||||++....+...     
T Consensus         1 ~~~~yk~p~-svlvvi~~~~~~vLl~~R~~~---~~~W~~~~G~~e~gE~~~~aa~RE~~EEtGi~~~~~~~~L~D~~~~   76 (148)
T PRK09438          1 MTMPYKIPV-SVLVVIYTPDLKVLMLQRADD---PDFWQSVTGSLEEGETPAQTAAREVKEETGIDVAAEQLTLIDCQRT   76 (148)
T ss_pred             CCCCCCCCC-EEEEEEECCCCCEEEEEECCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCE
T ss_conf             998989997-799999859998999997489---9967098312689979899999999998686225671364266520


Q ss_pred             EE------EECCCCCC--EEEEEEEEEEEECC-EECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             66------52057886--06999999997548-37688233157027788324889736989999998721
Q gi|254780325|r   77 TF------ISHPYEKF--HLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA  138 (141)
Q Consensus        77 ~~------~~~~~~~~--~~~~~~~~~~~~~~-~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~  138 (141)
                      ..      +.|.|...  +-.-++|.+...+. .+..+||.+++|++.++..++.++++|+..|..|.++.
T Consensus        77 ~~yeI~~~wr~RY~pgv~~n~EhvF~l~l~~~~~V~LsEH~~~~Wl~~~eA~~l~~s~sN~~Ai~~l~~~~  147 (148)
T PRK09438         77 VEYEIFPHWRHRYAPGVTHNTEHWFCLALPHERPVVLTEHLAYQWLPAEEAAALTKSPSNAEAILQLVINA  147 (148)
T ss_pred             EEEECCHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHC
T ss_conf             23211442222048885241679999985889972120143245247999999866933199999998634


No 37 
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.88  E-value=4.5e-22  Score=147.65  Aligned_cols=107  Identities=30%  Similarity=0.485  Sum_probs=83.7

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      ++++|++++|++||+||.+++  .++|.||||++|+|||+++|++||++||||+++....++.....  ...    ..++
T Consensus         3 a~~ii~~~~~~vLl~~r~~~~--~~~w~~PGG~ve~gEt~~~a~~RE~~EE~g~~v~~~~~~~~~~~--~~~----~~~~   74 (121)
T cd04669           3 ASIVIINDQGEILLIRRIKPG--KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ--NGR----TEHY   74 (121)
T ss_pred             EEEEEEECCCEEEEEEECCCC--CCEEECCCCEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEE--CCC----EEEE
T ss_conf             899999779999999984899--98698996060599999999999988760988996559999974--798----0699


Q ss_pred             EEEEEECCEECCC-----------HHHEEEECCHHHHCCCCCCCCC
Q ss_conf             9999754837688-----------2331570277883248897369
Q gi|254780325|r   93 FVCHCFEGIPQSC-----------EGQQLQWVALDDLQNYSMLPAD  127 (141)
Q Consensus        93 ~~~~~~~~~~~~~-----------E~~~~~Wi~~~el~~~~~~~~~  127 (141)
                      |.|+...+.+...           +.-++.|+++++|..+++.|++
T Consensus        75 F~~~i~~g~~~~~~~~e~~~~~~~~~~e~~WvpldeL~~l~l~P~~  120 (121)
T cd04669          75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRPEQ  120 (121)
T ss_pred             EEEEEECCEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCC
T ss_conf             9999981478158784235778887289999779992728989887


No 38 
>pfam00293 NUDIX NUDIX domain.
Probab=99.87  E-value=2.1e-21  Score=143.82  Aligned_cols=124  Identities=31%  Similarity=0.503  Sum_probs=93.9

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      .|.+++++.++++||++|.+.+..+++|+||||++++|||+.+||+||++||||+.+..........+..+........+
T Consensus         4 ~v~vvi~~~~~~vll~~r~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~   83 (133)
T pfam00293         4 AVGVVLLNEDGEVLLVRRSRTPGTPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVLEYPAPGRDLREHVH   83 (133)
T ss_pred             EEEEEEEECCCEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCEEEE
T ss_conf             89999994899899999276899998499984557279889999999988975951157899999986499999829999


Q ss_pred             EEEEEEECCE--EC--CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             9999975483--76--88233157027788324889736989999998
Q gi|254780325|r   92 FFVCHCFEGI--PQ--SCEGQQLQWVALDDLQNYSMLPADLSLISFLR  135 (141)
Q Consensus        92 ~~~~~~~~~~--~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~  135 (141)
                      +|.+......  +.  ..|+.+++|++++++.++........++..+.
T Consensus        84 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~e~~~~~~~~~~~~~~~~~~  131 (133)
T pfam00293        84 VFLAELLGGEPEPQPDPGEVSEVRWVPLEELLELLLAGEIREVIALLL  131 (133)
T ss_pred             EEEEEEECCCCCCCCCCCEEEEEEEEEHHHHHHHHHCCCHHHHHHHHH
T ss_conf             999998168644668978389999999999998878897389999997


No 39 
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.85  E-value=7.2e-21  Score=140.73  Aligned_cols=109  Identities=27%  Similarity=0.373  Sum_probs=81.8

Q ss_pred             EEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE--EEEEEECCC------
Q ss_conf             99999935986999991789-888983822573101787488999988887626520244202--556652057------
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLV--PLTFISHPY------   83 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~--~~~~~~~~~------   83 (141)
                      |+++|.+.+|++||+||+.+ ..+||+|.||||++|.|||+.+||.||++|||||.+.+.+..  ....+...|      
T Consensus         4 Va~ii~d~dgrvLL~rRs~~~~~~Pg~W~~PGG~ve~GEt~~eaa~REl~EEtGL~v~p~~~~~~~l~l~EsvyP~~l~~   83 (143)
T cd04694           4 VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSR   83 (143)
T ss_pred             EEEEEECCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEECCCCCCCC
T ss_conf             99999989992999985898889998171887745899898999999998976763470112212446876307740145


Q ss_pred             --CCCEEEEEEEEEEEECCE--------ECCCHHHEEEECCHHHHCCC
Q ss_conf             --886069999999975483--------76882331570277883248
Q gi|254780325|r   84 --EKFHLLMPFFVCHCFEGI--------PQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~--------~~~~E~~~~~Wi~~~el~~~  121 (141)
                        +..|.++.|+.|...+..        +.+.|++.+.|++++.+...
T Consensus        84 glP~~HhIviy~~~~~~~~~~~~q~~l~~~~~ev~~~~Wl~~~~~~~~  131 (143)
T cd04694          84 GLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV  131 (143)
T ss_pred             CCCCCEEEEEEEEEEECCCHHHHHCCCCCCHHHCCEEEECCHHHHHHH
T ss_conf             887633899999998366034220123789667642485189999999


No 40 
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.85  E-value=3.3e-20  Score=136.88  Aligned_cols=133  Identities=26%  Similarity=0.368  Sum_probs=90.7

Q ss_pred             CCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC
Q ss_conf             86447864999999999359869999917898889838225731017874889999888876265202442025566520
Q gi|254780325|r    2 IDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH   81 (141)
Q Consensus         2 ~~~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~   81 (141)
                      +.|.|..+.. ++++++..+++|||+||.+.+. +|+|.||||++|.|||+++||.||++||||+++...++..+.....
T Consensus         2 ~~~~~~~p~~-~v~~~i~~~~~iLLvrR~~~p~-~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~   79 (145)
T COG1051           2 LAMGYRTPLV-AVGALIVRNGRILLVRRANEPG-AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPG   79 (145)
T ss_pred             CCCCCCCCCE-EEEEEEECCCEEEEEEECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC
T ss_conf             8667787430-5789994288599998668888-9868188662789988899999999998788654306888854888


Q ss_pred             CCCCCEEEEEEEEEEEECCEECCC---HHHEEEECCHHHHCCCCCCC-CCHHHHHHHHH
Q ss_conf             578860699999999754837688---23315702778832488973-69899999987
Q gi|254780325|r   82 PYEKFHLLMPFFVCHCFEGIPQSC---EGQQLQWVALDDLQNYSMLP-ADLSLISFLRK  136 (141)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~---E~~~~~Wi~~~el~~~~~~~-~~~~ii~~l~~  136 (141)
                      ..+..+.+.++|.+....+.+...   +.....|++.+++.....+. .++.-+..+..
T Consensus        80 rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~  138 (145)
T COG1051          80 RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPLPLAFTLADLRRLFL  138 (145)
T ss_pred             CCCCEEEEEEEEEEECCCCCCCCCCHHHHHHCCEECHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf             78852699999999714786666772647627526454554544431022999999975


No 41 
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.85  E-value=1.6e-20  Score=138.70  Aligned_cols=106  Identities=31%  Similarity=0.407  Sum_probs=82.4

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC--CCEEE
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566520578--86069
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE--KFHLL   89 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~--~~~~~   89 (141)
                      +.|++|+.++|+||+++|...    ++|.||||++++|||.++|++||++||||+++++.++++.....+...  ..|.+
T Consensus         2 vra~aii~~~~~vLl~~~~~~----~~~~lPGG~ve~gE~~~~a~~RE~~EE~G~~v~~~~~l~~~e~~~~~~~~~~H~i   77 (125)
T cd04689           2 LRARAIVRAGNKVLLARVIGQ----PHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEI   77 (125)
T ss_pred             EEEEEEEEECCEEEEEEECCC----CCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEEEECCCCCEEEE
T ss_conf             699999998999999998899----9589997985699899999999999987997894659999974677599651899


Q ss_pred             EEEEEEEEECC----EECCC-HHHEEEECCHHHHCCC
Q ss_conf             99999997548----37688-2331570277883248
Q gi|254780325|r   90 MPFFVCHCFEG----IPQSC-EGQQLQWVALDDLQNY  121 (141)
Q Consensus        90 ~~~~~~~~~~~----~~~~~-E~~~~~Wi~~~el~~~  121 (141)
                      .++|.|+...+    .+... ++.+++|++++++.-+
T Consensus        78 ~~~f~~~~~~~~~~~~~~~d~d~~~~~WvpL~eL~ly  114 (125)
T cd04689          78 NHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY  114 (125)
T ss_pred             EEEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHC
T ss_conf             9999995255455689888886678999718995348


No 42 
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and 
Probab=99.84  E-value=2.7e-20  Score=137.38  Aligned_cols=118  Identities=19%  Similarity=0.246  Sum_probs=85.8

Q ss_pred             EEEEEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCCCCC
Q ss_conf             99999993598---69999917898889838225731017874889999888876265202442025566--52057886
Q gi|254780325|r   12 VVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPYEKF   86 (141)
Q Consensus        12 vv~~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~~~~   86 (141)
                      ++++++++..+   +|||++|+     .|.|+||||++|+|||+.+||.||++|||||.+..........  +.+...+.
T Consensus         4 saG~V~~r~~~~~~~vLLi~~~-----~g~W~~P~G~ie~gEs~~~aA~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~   78 (130)
T cd03428           4 SAGAIIYRRLNNEIEYLLLQAS-----YGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGK   78 (130)
T ss_pred             EEEEEEEEECCCCEEEEEEECC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCE
T ss_conf             8899999864994899999918-----99689990504899599999999999987987078785174789998168978


Q ss_pred             EEEEEEEEEEEECCE-EC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHH
Q ss_conf             069999999975483-76-8823315702778832488973698999999
Q gi|254780325|r   87 HLLMPFFVCHCFEGI-PQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFL  134 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~-~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l  134 (141)
                      ...+++|.+...++. +. ..|+.+++|+++++..++-.++.++.+|+..
T Consensus        79 ~~~v~~fl~~~~~~~~~~~~~E~~d~~W~~~~eA~~~l~~~~~r~il~~a  128 (130)
T cd03428          79 LKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA  128 (130)
T ss_pred             EEEEEEEEEEEECCCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHH
T ss_conf             99999999998178678998215678998399999883997399999996


No 43 
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.83  E-value=4.2e-20  Score=136.32  Aligned_cols=129  Identities=25%  Similarity=0.367  Sum_probs=94.2

Q ss_pred             CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE----EEEECCC
Q ss_conf             649999999993598699999178988898382257310178748899998888762652024420255----6652057
Q gi|254780325|r    8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL----TFISHPY   83 (141)
Q Consensus         8 ~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~----~~~~~~~   83 (141)
                      +++.+.+-+++..+|+|||.+|...|.. |+|.||||++++|||+.+||.||+.|||||++....+.+.    ..+.++.
T Consensus       199 pp~fvT~DaVVv~~ghVLLIrR~~~P~k-G~WALPGGfv~~~Etl~~aa~REL~EETgl~~~~~~l~~~l~~~~vfd~P~  277 (340)
T PRK05379        199 PPTFVTVDAVVVQSGHVLLVRRRAEPGK-GLWALPGGFVGQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG  277 (340)
T ss_pred             CCEEEEEEEEEEECCEEEEEEECCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC
T ss_conf             8515653169998898999941899988-887589886999999899999988641268876203220012432478999


Q ss_pred             --CCCEEEEEEEEEEEECCE-EC---CCHHHEEEECCHHHHCCC--CCCCCCHHHHHHHHHH
Q ss_conf             --886069999999975483-76---882331570277883248--8973698999999872
Q gi|254780325|r   84 --EKFHLLMPFFVCHCFEGI-PQ---SCEGQQLQWVALDDLQNY--SMLPADLSLISFLRKH  137 (141)
Q Consensus        84 --~~~~~~~~~~~~~~~~~~-~~---~~E~~~~~Wi~~~el~~~--~~~~~~~~ii~~l~~~  137 (141)
                        +...++.+.|.+....+. |.   ..+..+.+|++++++...  .|+..+..||+.+..+
T Consensus       278 RdpRGrvvt~a~~~~l~~~~lp~v~agDDA~~A~W~pl~el~~~~~~~feDH~~Il~~fl~~  339 (340)
T PRK05379        278 RSLRGRTITHAFLFEFPAGELPAVKGGDDADKARWVPLAELAAMRDRMFEDHFQIITHFLGR  339 (340)
T ss_pred             CCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHCEEEEHHHHHHCHHHHHCCHHHHHHHHHCC
T ss_conf             99987789999999726776678789985565776539996547775644099999998508


No 44 
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.83  E-value=4.3e-20  Score=136.23  Aligned_cols=108  Identities=29%  Similarity=0.442  Sum_probs=83.3

Q ss_pred             EEEEEEEECCCEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             9999999359869999917898-889838225-73101787488999988887626520244202556652057886069
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      ||.+.|+|.+|++||+||+.++ .+||+|+++ ||+++.|||. +||.||++||+|+.+....+.....+.+........
T Consensus         2 vv~v~v~n~~g~iLlqkRs~~K~~~Pg~W~~~~gg~v~~gE~~-eaa~RE~~EElGi~l~~~~~~~~~~~~~~~~~~~~~   80 (127)
T cd04693           2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDY   80 (127)
T ss_pred             EEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEE
T ss_conf             8999999399989999668998899972767887551289859-999999999717701766647889999269925899


Q ss_pred             EEEEEEEEECCEE--CCCHHHEEEECCHHHHCCC
Q ss_conf             9999999754837--6882331570277883248
Q gi|254780325|r   90 MPFFVCHCFEGIP--QSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        90 ~~~~~~~~~~~~~--~~~E~~~~~Wi~~~el~~~  121 (141)
                      . ++.+....+.+  +..|+++++|++++|+.++
T Consensus        81 ~-~~~~~~~~~~~~~~~~EV~d~~Wvs~eEl~~~  113 (127)
T cd04693          81 Y-LFYADVEIGKLILQKEEVDEVKFVSKDEIDGL  113 (127)
T ss_pred             E-EEEEEEECCCCCCCHHHEEEEEEECHHHHHHH
T ss_conf             9-99970378987289378246899679999999


No 45 
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.83  E-value=1.4e-20  Score=139.00  Aligned_cols=121  Identities=27%  Similarity=0.352  Sum_probs=88.3

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99999993598699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      +|.++|++.++++||+|+...+  +|+|.+|||++|+|||+++|+.||++||||+.++..++.  .+..+++++.  .+.
T Consensus         2 ~Vi~~V~~~~~~iLL~r~~~~~--~g~~~~~aG~ve~GEs~e~a~~REv~EE~gv~v~~i~y~--~sqpwpfp~~--Lm~   75 (131)
T cd03429           2 AVIVLVIDGGDRILLARQPRFP--PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYV--GSQPWPFPSS--LML   75 (131)
T ss_pred             EEEEEEEECCCEEEEECCCCCC--CCCEECCEEEECCCCCHHHCEEEEEEEEECCEECCEEEE--EECCCCCCCE--EEE
T ss_conf             7999999489889997056799--995946626643999979911898998717702216998--8758799886--899


Q ss_pred             EEEEEEECCEECC--CHHHEEEECCHHHHCCC----CCCCCCHHHHHHHHHHC
Q ss_conf             9999975483768--82331570277883248----89736989999998721
Q gi|254780325|r   92 FFVCHCFEGIPQS--CEGQQLQWVALDDLQNY----SMLPADLSLISFLRKHA  138 (141)
Q Consensus        92 ~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~----~~~~~~~~ii~~l~~~~  138 (141)
                      .|.|+..++++..  .|..+++|++++|+.+.    ...|+...+-..|.++.
T Consensus        76 ~f~a~~~~~e~~~~~~Ei~earWfs~del~~~~~~~~~~p~~~sIA~~li~~w  128 (131)
T cd03429          76 GFTAEADSGEIVVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW  128 (131)
T ss_pred             EEEEEECCCCCCCCHHHEEEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf             99999769976699316216776769998663328877899210999999998


No 46 
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.83  E-value=1.2e-19  Score=133.72  Aligned_cols=113  Identities=24%  Similarity=0.439  Sum_probs=85.1

Q ss_pred             EEEEEEEECCCEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             9999999359869999917898-889838225-73101787488999988887626520244202556652057886069
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      ++.+.|++.+|++||+||+.++ .+||+|+.. ||+++.|||.++||.||+.||+||+.....  ....+.+........
T Consensus         2 a~~v~i~n~~G~iLlqkRs~~K~~~Pg~wd~s~~Ghv~~GE~~~~aa~REl~EElGI~~~~l~--~~~~~~~~~~~~~~~   79 (126)
T cd04697           2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLT--PLGLFYYDTDGNRVW   79 (126)
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE--EEEEEEECCCCCCEE
T ss_conf             799999929997999985799987996134576876779989999999999998689866756--758999878988489


Q ss_pred             EEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC----CCCCCC
Q ss_conf             999999975483--76882331570277883248----897369
Q gi|254780325|r   90 MPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY----SMLPAD  127 (141)
Q Consensus        90 ~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~----~~~~~~  127 (141)
                      .++|.+.. ++.  ++..|+++++|++++|+.++    +|.|..
T Consensus        80 ~~vf~~~~-d~~l~~~~eEV~~~~w~~~~El~~~~~~~~ftPd~  122 (126)
T cd04697          80 GKVFSCVY-DGPLKLQEEEVEEITWLSINEILQFKEGENITPDS  122 (126)
T ss_pred             EEEEEEEE-CCCCCCCHHHHHEEEECCHHHHHHHHHCCCCCCCH
T ss_conf             99999999-99995996773117980399999898789979871


No 47 
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally 
Probab=99.79  E-value=7e-19  Score=129.24  Aligned_cols=122  Identities=24%  Similarity=0.414  Sum_probs=81.8

Q ss_pred             EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCCCC----
Q ss_conf             9999999359869999917898889838225731017874889999888876265202442025566--5205788----
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPYEK----   85 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~~~----   85 (141)
                      .|+++|+|++|+||+++|...   +|.|+||||++|.|||+++||.||+.|||||.++..++++...  +.|.++.    
T Consensus         5 ~Vg~vi~n~~~~vl~~~R~~~---~~~W~~P~G~i~~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~Y~~P~~~~~   81 (147)
T cd03671           5 NVGVVLFNEDGKVFVGRRIDT---PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL   81 (147)
T ss_pred             EEEEEEEECCCEEEEEEECCC---CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECHHHHHH
T ss_conf             789999928994999996899---88887980024799999999999999986966231355564027358607266543


Q ss_pred             ------C-EEEEEEEEEEEE--CCEEC-----CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             ------6-069999999975--48376-----8823315702778832488973698999999872
Q gi|254780325|r   86 ------F-HLLMPFFVCHCF--EGIPQ-----SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH  137 (141)
Q Consensus        86 ------~-~~~~~~~~~~~~--~~~~~-----~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~  137 (141)
                            + .-..+.|++...  +.++.     ..|.++++|++++++.+. .++.-+++.....++
T Consensus        82 ~~~~~~~~GQ~Qkwfl~~~~g~d~~I~l~~~~~~EF~~wrW~~~~e~~~~-vv~FKr~vY~~vl~e  146 (147)
T cd03671          82 KIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL-IVPFKRPVYEAVLKE  146 (147)
T ss_pred             CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHH-CCHHHHHHHHHHHHH
T ss_conf             01466457978799999987796507679999987456487888997675-525419999999975


No 48 
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.78  E-value=1.2e-18  Score=127.84  Aligned_cols=107  Identities=23%  Similarity=0.243  Sum_probs=75.3

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      |+++++..++++|++||+..+.. |+|.||||++|.|||+++||.||++||||+.+++..+..+.  .+..++.++.+++
T Consensus         6 vv~~~~~~~d~vLl~rR~~~P~~-G~w~lPgGf~e~gEt~~~aa~RE~~EEtgl~v~~~~~~Lf~--v~s~p~~~~~~~~   82 (118)
T cd04674           6 VVVALLPVDDGLLVIRRGIEPGR-GKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD--VRSAPDGTLLVFG   82 (118)
T ss_pred             EEEEEEEECCEEEEEEECCCCCC-CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE--CCCCCCEEEEEEE
T ss_conf             89999997999999985999888-85848753754999999999999999768511614017987--1546843799999


Q ss_pred             EEEEEECCE-E---CCCHHHEEEECCHHHHCCCCCC
Q ss_conf             999975483-7---6882331570277883248897
Q gi|254780325|r   93 FVCHCFEGI-P---QSCEGQQLQWVALDDLQNYSML  124 (141)
Q Consensus        93 ~~~~~~~~~-~---~~~E~~~~~Wi~~~el~~~~~~  124 (141)
                      |.+.....+ +   ...|..++++++..+  ++.|+
T Consensus        83 ~l~~~~~~dlp~f~pt~Es~e~~l~~~p~--eLAFP  116 (118)
T cd04674          83 LLPERRAADLPPFEPTDETTERAVVTAPS--ELAFP  116 (118)
T ss_pred             EEHHHCCCCCCCCCCCCCEEEEEEECCCC--CCCCC
T ss_conf             83100124368989883303369516744--44667


No 49 
>PRK00714 dinucleoside polyphosphate hydrolase; Reviewed
Probab=99.78  E-value=2e-18  Score=126.64  Aligned_cols=128  Identities=22%  Similarity=0.264  Sum_probs=84.7

Q ss_pred             CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCC
Q ss_conf             7864999999999359869999917898889838225731017874889999888876265202442025566--52057
Q gi|254780325|r    6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPY   83 (141)
Q Consensus         6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~   83 (141)
                      .++.-..|+++|++++|+||+++|..    ++.|+||||++|.|||+++||.||+.||||+..+..++++...  ..|++
T Consensus         4 ~~~YR~nVg~vi~n~~g~vl~~~R~~----~~~Wq~PqGgid~gE~~~~aa~REl~EE~Gi~~~~v~ii~~~~~wl~Yd~   79 (156)
T PRK00714          4 DDGYRPNVGIILLNRQGQVFWGRRIG----QHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDL   79 (156)
T ss_pred             CCCCCCCEEEEEEECCCCEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC
T ss_conf             78888763999990999299999889----99767994500799899999999999985898200045762588389858


Q ss_pred             CC--------CEE---EEEEEEEEEE--CCEECC-----CHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             88--------606---9999999975--483768-----8233157027788324889736989999998721
Q gi|254780325|r   84 EK--------FHL---LMPFFVCHCF--EGIPQS-----CEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA  138 (141)
Q Consensus        84 ~~--------~~~---~~~~~~~~~~--~~~~~~-----~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~  138 (141)
                      +.        ..+   ....|.++..  +.++..     .|.++++|++++++.+.- .|--+++.....+++
T Consensus        80 P~~~~~~~~~~~y~GQ~QkWfl~rf~g~d~~Inl~~~~~pEF~~wkW~~~~~~~~~v-v~FKr~vY~~vl~ef  151 (156)
T PRK00714         80 PKRLVRRDWKPVCIGQKQKWFLLRLTGDDSEINLNTSHHPEFDAWRWVSYWYPLRQV-VPFKRDVYRRVLKEF  151 (156)
T ss_pred             CHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCEEEEEECCHHHHHHHC-CCCCHHHHHHHHHHH
T ss_conf             177642430587026368999999817985176689999862334758889977763-331899999999999


No 50 
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.76  E-value=7.2e-18  Score=123.43  Aligned_cols=105  Identities=25%  Similarity=0.393  Sum_probs=74.4

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEEEEE--CCCC---CC
Q ss_conf             9999993598699999178988898382257310178748899998888762652-0244202556652--0578---86
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV-VKPFSLVPLTFIS--HPYE---KF   86 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~-~~~~~~~~~~~~~--~~~~---~~   86 (141)
                      +|.+|+.++++|||+++...    +.|.||||++|+|||+.+|++||++||||+. +.+.+.++...-.  +.++   -.
T Consensus         2 avraIi~~~~kiLL~~~~~~----~~~~lPGG~ve~gE~~~~al~RE~~EETG~~~i~~~~~~G~~~E~r~~~~~~~~~~   77 (131)
T cd04686           2 AVRAIILQGDKILLLYTKRY----GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIF   77 (131)
T ss_pred             CEEEEEEECCEEEEEEECCC----CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCCCCEE
T ss_conf             48999998999999997699----96767877378998989999999998749610131311455999841005888779


Q ss_pred             EEEEEEEEEEEECC--EECCC--H---HHEEEECCHHHHCCC
Q ss_conf             06999999997548--37688--2---331570277883248
Q gi|254780325|r   87 HLLMPFFVCHCFEG--IPQSC--E---GQQLQWVALDDLQNY  121 (141)
Q Consensus        87 ~~~~~~~~~~~~~~--~~~~~--E---~~~~~Wi~~~el~~~  121 (141)
                      +...++|.|+....  .+...  |   +....|+++++.-..
T Consensus        78 ~m~s~~Y~C~v~~~~g~~~le~~E~~~G~~pvWv~i~eAi~~  119 (131)
T cd04686          78 HMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH  119 (131)
T ss_pred             EEEEEEEEEEECHHCCCCCCCCHHHHCCCCEEECCHHHHHHH
T ss_conf             898789999851221898776034426972176789999998


No 51 
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate 
Probab=99.76  E-value=6.8e-18  Score=123.56  Aligned_cols=111  Identities=27%  Similarity=0.376  Sum_probs=81.4

Q ss_pred             EEEEEEEEECC---CEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             99999999359---869999917898-889838225-7310178748899998888762652024420255665205788
Q gi|254780325|r   11 LVVACAVFEPG---GKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus        11 ~vv~~~ii~~~---~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      .++-+-|++++   +++||+||+..+ .+||+|+.. ||+++.|||..+||+||++||+||.+...++..+..+.+.+..
T Consensus         3 ra~h~~v~~~~~~~g~illqkRs~~K~~~Pg~wd~s~~Ghv~~gEt~~~aa~REl~EElGl~~~~~~l~~lg~~~~~~~~   82 (144)
T cd04692           3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH   82 (144)
T ss_pred             EEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEEEEEC
T ss_conf             38999999667995289999788998789983116657504579998999998999986887676881882189999744


Q ss_pred             --C---EEEEEEEEEEEEC--C--EECCCHHHEEEECCHHHHCCC
Q ss_conf             --6---0699999999754--8--376882331570277883248
Q gi|254780325|r   86 --F---HLLMPFFVCHCFE--G--IPQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        86 --~---~~~~~~~~~~~~~--~--~~~~~E~~~~~Wi~~~el~~~  121 (141)
                        .   +-..++|.+....  +  .++..|+++++|++++++.++
T Consensus        83 ~~~~~d~e~~~vy~~~~~~~~~~~~~~~~EV~~~~wv~~~el~~~  127 (144)
T cd04692          83 IGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL  127 (144)
T ss_pred             CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHEEEEECHHHHHHH
T ss_conf             998172089999999968984567899788105999879999999


No 52 
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.75  E-value=2.2e-17  Score=120.60  Aligned_cols=115  Identities=25%  Similarity=0.329  Sum_probs=80.8

Q ss_pred             EEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEEECC--CCCCE
Q ss_conf             999999935986999991789-8889838225731017874889999888876265202-4420255665205--78860
Q gi|254780325|r   12 VVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK-PFSLVPLTFISHP--YEKFH   87 (141)
Q Consensus        12 vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~-~~~~~~~~~~~~~--~~~~~   87 (141)
                      .+.++|++.+|+|||++|... ...+++|.+|||++|+|||+.+||.||+.|||||.+. ....+......+.  ....+
T Consensus         2 aarvvl~d~~grvLL~r~~~~~~~~~~~W~~pgG~~~~gE~~~~a~~RE~~EE~G~~~~~~~~~v~~r~~~f~~~g~~~~   81 (133)
T cd04685           2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR   81 (133)
T ss_pred             EEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCCC
T ss_conf             17999986999999997447899999918599874889869899999999987597800244637999678703787100


Q ss_pred             EEEEEEEEEEECCEECCC-----H---HHEEEECCHHHHCCC--CCCCC
Q ss_conf             699999999754837688-----2---331570277883248--89736
Q gi|254780325|r   88 LLMPFFVCHCFEGIPQSC-----E---GQQLQWVALDDLQNY--SMLPA  126 (141)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~-----E---~~~~~Wi~~~el~~~--~~~~~  126 (141)
                      -.-.||.+...+.++...     |   ..+.+|+++++|...  .++|.
T Consensus        82 ~~E~fflvr~~~~e~~~~~~t~~E~~~i~e~RWws~~EL~~t~E~v~P~  130 (133)
T cd04685          82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATPETVYPP  130 (133)
T ss_pred             CEEEEEEEEECCCEECCCCCCHHHHHHCCCCCCCCHHHHHHCCCEECCC
T ss_conf             0689999994686035766766664010255258899993279803686


No 53 
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.74  E-value=4.7e-17  Score=118.72  Aligned_cols=111  Identities=26%  Similarity=0.386  Sum_probs=82.2

Q ss_pred             EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE--CCCC
Q ss_conf             4999999999359869999917898-88983822-573101787488999988887626520244202556652--0578
Q gi|254780325|r    9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS--HPYE   84 (141)
Q Consensus         9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~--~~~~   84 (141)
                      .+.++-+.|++.+|++||+||+..+ .+||+|+. .||++.+|||..+||.||+.||+||.+...... ...+.  ..+.
T Consensus        29 ~Hrav~v~v~n~~g~lllqkRs~~K~~~Pg~wd~s~~Gh~~~GE~~~~aa~Rel~EElGi~~~~~~~~-~~~~~y~~~~~  107 (165)
T cd02885          29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV-LPRFRYRAPDD  107 (165)
T ss_pred             EEEEEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEEECCCC
T ss_conf             48999999990899799998579886899707355434676997589999998888619985432046-66899932248


Q ss_pred             CC---EEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC
Q ss_conf             86---069999999975483--76882331570277883248
Q gi|254780325|r   85 KF---HLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        85 ~~---~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~  121 (141)
                      +.   +-..++|.+.. ++.  +++.|+++++|++++++.++
T Consensus       108 ~~~~e~E~~~vy~~~~-d~~~~~~~~EV~~~~w~~~~el~~~  148 (165)
T cd02885         108 GGLVEHEIDHVFFARA-DVTLIPNPDEVSEYRWVSLEDLKEL  148 (165)
T ss_pred             CCCCCEEEEEEEEEEE-CCCCCCCHHHHEEEEEECHHHHHHH
T ss_conf             9874237999999965-8987699579238899789999999


No 54 
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=99.69  E-value=4.2e-17  Score=119.03  Aligned_cols=104  Identities=27%  Similarity=0.394  Sum_probs=81.0

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      ++.+++.+++++||.++++..  +|+|..-.|+||+|||+|+|+.||++||+||.++.  +.+..+..+++++.  .+.-
T Consensus       146 ~vIv~v~~~~~ilLa~~~~h~--~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~--vrY~~SQPWPfP~S--LMig  219 (279)
T COG2816         146 CVIVAVIRGDEILLARHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKN--VRYVGSQPWPFPHS--LMLG  219 (279)
T ss_pred             EEEEEEECCCCEEECCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCEEEEE--EEEEECCCCCCCHH--HHHH
T ss_conf             699999617720006898877--85300013304578549999999988864717765--66873268999534--6524


Q ss_pred             EEEEEECCEECCC--HHHEEEECCHHH-HCCCC
Q ss_conf             9999754837688--233157027788-32488
Q gi|254780325|r   93 FVCHCFEGIPQSC--EGQQLQWVALDD-LQNYS  122 (141)
Q Consensus        93 ~~~~~~~~~~~~~--E~~~~~Wi~~~e-l~~~~  122 (141)
                      |.+...+++++.+  |..+.+|++.+| ++.++
T Consensus       220 f~aey~sgeI~~d~~Eleda~WFs~~evl~~L~  252 (279)
T COG2816         220 FMAEYDSGEITPDEGELEDARWFSRDEVLPALP  252 (279)
T ss_pred             HEEEECCCCCCCCCCHHHHCCCCCHHHHHHHCC
T ss_conf             025542666467822133411347777776268


No 55 
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.69  E-value=7.7e-16  Score=111.71  Aligned_cols=112  Identities=26%  Similarity=0.416  Sum_probs=82.6

Q ss_pred             EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEECCCCC
Q ss_conf             4999999999359869999917898-88983822-573101787488999988887626520244202-55665205788
Q gi|254780325|r    9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLV-PLTFISHPYEK   85 (141)
Q Consensus         9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~-~~~~~~~~~~~   85 (141)
                      .+.++.+.+++.+|++||+||+..+ .+||+|+. -+|++.+||+.++||.||+.||+||.++....+ ....+...+++
T Consensus        33 lHRafsv~l~~~~g~lllq~Rs~~K~~~pg~w~~s~~gH~~~gE~~~~aa~R~l~EElGi~~~~l~~~~~~f~Y~a~~~~  112 (184)
T PRK03759         33 LHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAIIRRCREELGVEITDLTLVLPDFRYRATDPN  112 (184)
T ss_pred             EEEEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCC
T ss_conf             38899999995999699997158973799940035446789998999999999999869883444055003899723899


Q ss_pred             C---EEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC
Q ss_conf             6---069999999975483--76882331570277883248
Q gi|254780325|r   86 F---HLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        86 ~---~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~  121 (141)
                      .   +-..++|.+.. ++.  |.+.|+++++|+++++|...
T Consensus       113 g~~E~E~~~Vf~~~~-d~~~~pnp~EV~e~~Wv~~~eL~~~  152 (184)
T PRK03759        113 GIVENEVCPVFAARA-TSALQPNPDEVMDYQWVDPADLLRA  152 (184)
T ss_pred             CCCEEEEEEEEEEEE-CCCCCCCHHHHEEEEEECHHHHHHH
T ss_conf             862257999999984-8989899689134689869999999


No 56 
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.69  E-value=1.5e-16  Score=115.73  Aligned_cols=104  Identities=22%  Similarity=0.379  Sum_probs=69.7

Q ss_pred             EEEEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             99999999359-86999991789888983822573101787488999988887626520244202556652057886069
Q gi|254780325|r   11 LVVACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        11 ~vv~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      .+.+++|++.+ +++||+++..    ++.|+||||+++.||++.+||+||+.||||+++.+.- ..-...........+ 
T Consensus         2 Pv~GaIiln~~~~kvLLVk~~~----~~~W~fPkGki~~~E~~~~~AiREv~EEtG~Dv~~~i-~~~~~Ie~~~~~q~~-   75 (145)
T cd03672           2 PVYGAIILNEDLDKVLLVKGWK----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI-DKDDYIELIIRGQNV-   75 (145)
T ss_pred             CEEEEEEEECCCCEEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHC-CCCEEEEEEECCEEE-
T ss_conf             7259999918999899999438----9958599641689979899998887773275754215-846069999789089-


Q ss_pred             EEEEEEEEEC----CEECC-CHHHEEEECCHHHHCCC
Q ss_conf             9999999754----83768-82331570277883248
Q gi|254780325|r   90 MPFFVCHCFE----GIPQS-CEGQQLQWVALDDLQNY  121 (141)
Q Consensus        90 ~~~~~~~~~~----~~~~~-~E~~~~~Wi~~~el~~~  121 (141)
                       .+|.+....    ..|+. .|..+++|++.++|+..
T Consensus        76 -rlyiv~gVp~dt~F~p~TRkEI~~I~W~~i~~Lp~~  111 (145)
T cd03672          76 -KLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTK  111 (145)
T ss_pred             -EEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHH
T ss_conf             -999982888887517887232765788898884444


No 57 
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.68  E-value=1e-16  Score=116.78  Aligned_cols=104  Identities=26%  Similarity=0.372  Sum_probs=81.3

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      ++.+++.+++++||.+.+..  .+|+|....|++|+|||.++|+.||++||+|+.++..+++  .+..++|++.  .+.-
T Consensus       135 aVIvlV~~gd~iLLar~~~~--~~~~yS~lAGFvE~GEslE~aV~REV~EE~Gi~V~~i~Y~--~SQpWPFP~s--LMlG  208 (257)
T PRK00241        135 CIIVAVRRGDEILLARHPRH--RNGVYTVLAGFVEVGESLEQCVAREVMEEVGIKVKNLRYV--GSQPWPFPRS--LMLG  208 (257)
T ss_pred             EEEEEEEECCEEEECCCCCC--CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEECCEEEE--EECCCCCCHH--HHEE
T ss_conf             69999972998876147889--9985230100365785899975351023467287540175--4158889741--1210


Q ss_pred             EEEEEECCEECC--CHHHEEEECCHHHHCCCC
Q ss_conf             999975483768--823315702778832488
Q gi|254780325|r   93 FVCHCFEGIPQS--CEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        93 ~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~  122 (141)
                      |.++..++++..  .|..+.+|++.++++.++
T Consensus       209 f~A~~~~~ei~~d~~Ei~~A~Wf~~delp~lP  240 (257)
T PRK00241        209 FHADYDSGEIVFDPKEIADAQWFTYDELPLLP  240 (257)
T ss_pred             EEEEECCCCCCCCHHHEEEEEEECHHHHHHCC
T ss_conf             69995688632583330224745689842069


No 58 
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is  Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.66  E-value=6.8e-16  Score=112.04  Aligned_cols=106  Identities=25%  Similarity=0.224  Sum_probs=78.3

Q ss_pred             EEEEEEECCC--EEEEEEECCCC-CCCCCEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEE
Q ss_conf             9999993598--69999917898-8898382257310178-748899998888762652024420255665205788606
Q gi|254780325|r   13 VACAVFEPGG--KVLLSCRPKDK-SHGEFWEFPGGKIEDG-ETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL   88 (141)
Q Consensus        13 v~~~ii~~~~--~iLl~~R~~~~-~~~g~W~lPGG~ve~g-Es~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~   88 (141)
                      |...++..++  ++|+.+|+.+. .++|.++||||++|++ ||+.+||.||.+||+|+..+..++++........  ..+
T Consensus         5 Vli~l~~~~~~~~ill~kRs~~l~~h~GqisfPGG~~e~~D~~~~~tAlREt~EEiGl~~~~~~~lg~L~~~~t~--s~~   82 (157)
T cd03426           5 VLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTR--SGF   82 (157)
T ss_pred             EEEEEEECCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC
T ss_conf             999999879967999998267667789848379960276653389999999999868991133898634871325--984


Q ss_pred             EEEEEEEEEEC---CEECCCHHHEEEECCHHHHCC
Q ss_conf             99999999754---837688233157027788324
Q gi|254780325|r   89 LMPFFVCHCFE---GIPQSCEGQQLQWVALDDLQN  120 (141)
Q Consensus        89 ~~~~~~~~~~~---~~~~~~E~~~~~Wi~~~el~~  120 (141)
                      .++.|.+...+   ..+...|++++.|++++++.+
T Consensus        83 ~V~PfV~~~~~~~~~~~~~~EV~~vf~vPL~~ll~  117 (157)
T cd03426          83 VVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLD  117 (157)
T ss_pred             EEEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHC
T ss_conf             89999999479876579848978881405999739


No 59 
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.65  E-value=1.8e-15  Score=109.53  Aligned_cols=94  Identities=23%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf             99999359869999917898889838225731017874889999888876265202442025566520578860699999
Q gi|254780325|r   14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFF   93 (141)
Q Consensus        14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (141)
                      |.+|...++++|++++..     +-|+||||++|+|||+++||+||+.||||+.+....+++...+......  ..-.+|
T Consensus         3 V~vi~~~~~~~Ll~~~~~-----rgw~~PGG~~e~gEt~~~aa~RE~~EEtG~~~~~l~~ig~Y~V~~~~~~--~~k~vY   75 (118)
T cd04665           3 VLVICFYDDGLLLVRHKD-----RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESG--FETLVY   75 (118)
T ss_pred             EEEEEEECCEEEEEEECC-----CCEECCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEECCCCCC--EEEEEE
T ss_conf             999997899999999289-----9787983041799999999999887732918410689999997689983--688899


Q ss_pred             EEEEECCEE--CCCHHHEEEECC
Q ss_conf             999754837--688233157027
Q gi|254780325|r   94 VCHCFEGIP--QSCEGQQLQWVA  114 (141)
Q Consensus        94 ~~~~~~~~~--~~~E~~~~~Wi~  114 (141)
                      .+.....+-  .-.|.....|++
T Consensus        76 ~a~i~~~~~~~~y~Et~gp~l~~   98 (118)
T cd04665          76 PAVSAQLEEKASYLETDGPVLFK   98 (118)
T ss_pred             EEEEEEEEECCCCCCCCCCEECC
T ss_conf             99964675037743437768716


No 60 
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.63  E-value=2.8e-15  Score=108.50  Aligned_cols=107  Identities=26%  Similarity=0.284  Sum_probs=76.4

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      |+++.++.+++++|.+..+.+..+-.|+||+|.+|+|||+++||+||++||||+.++....  +..+...-+-.+-.+++
T Consensus         5 V~il~~~~~~~i~lv~QyR~~~~~~~~E~PaG~id~gE~~~~aA~REL~EETG~~~~~~~~--l~~~~~~pg~~~~~~~~   82 (137)
T cd03424           5 VAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK--LGSFYPSPGFSDERIHL   82 (137)
T ss_pred             EEEEEECCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE--CCCCCCCCCCCCCEEEE
T ss_conf             9999986999899998144289983898155468899799999999974120651386789--33625888233717999


Q ss_pred             EEEEEECCE----ECCCHHHEEEECCHHHHCCC
Q ss_conf             999975483----76882331570277883248
Q gi|254780325|r   93 FVCHCFEGI----PQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        93 ~~~~~~~~~----~~~~E~~~~~Wi~~~el~~~  121 (141)
                      |.++.....    ....|..+..|++.+++.++
T Consensus        83 ~~a~~~~~~~~~~~d~~E~i~v~~~~~~e~~~~  115 (137)
T cd03424          83 FLAEDLSPGEEGLLDEGEDIEVVLVPLDEALEL  115 (137)
T ss_pred             EEEEECCCCCCCCCCCCCCEEEEEECHHHHHHH
T ss_conf             999944045567888775268999669999999


No 61 
>PRK10707 hypothetical protein; Provisional
Probab=99.61  E-value=1.2e-14  Score=104.79  Aligned_cols=101  Identities=20%  Similarity=0.165  Sum_probs=75.2

Q ss_pred             ECCCEEEEEEECCCC-CCCCCEECCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEE
Q ss_conf             359869999917898-88983822573101787-4889999888876265202442025566520578860699999999
Q gi|254780325|r   19 EPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGE-TPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCH   96 (141)
Q Consensus        19 ~~~~~iLl~~R~~~~-~~~g~W~lPGG~ve~gE-s~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (141)
                      +.+..+|+.+|+.+- .++|..+||||++|+++ |+.+||.||.+||+||..+..++++...-....+++  .+..|.+.
T Consensus        41 ~~~~~iLlt~Rs~~L~~H~GqIsFPGGk~e~~D~~~~~TALREt~EEiGl~~~~v~vlG~L~~~~t~sg~--~V~P~Vg~  118 (190)
T PRK10707         41 RPQPGLLLTQRAIHLRKHAGQVAFPGGAVDDTDASLIAAALREAEEEVAIPPSAVEVIGVLPPVDSVTGY--QVTPVVGI  118 (190)
T ss_pred             CCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCC--EEEEEEEE
T ss_conf             8995899997565356799988489967688888889999998889868994325898634735667898--89999999


Q ss_pred             EEC---CEECCCHHHEEEECCHHHHCCC
Q ss_conf             754---8376882331570277883248
Q gi|254780325|r   97 CFE---GIPQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        97 ~~~---~~~~~~E~~~~~Wi~~~el~~~  121 (141)
                      ..+   ..+...|++++.|++++++.+.
T Consensus       119 i~~~~~~~~~~~EV~~vf~vPL~~ll~~  146 (190)
T PRK10707        119 IPPNLPYRASEDEVAAVFEMPLAEALHL  146 (190)
T ss_pred             ECCCCCCCCCHHHHHHHEECCHHHHHCC
T ss_conf             7788777898488472355419996284


No 62 
>PRK11762 nudE ADP-ribose diphosphatase NudE; Provisional
Probab=99.59  E-value=1.3e-14  Score=104.72  Aligned_cols=104  Identities=23%  Similarity=0.242  Sum_probs=73.1

Q ss_pred             EEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf             99935986999991789888983822573101787488999988887626520244202556652057886069999999
Q gi|254780325|r   16 AVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVC   95 (141)
Q Consensus        16 ~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
                      +-+.++++|+|+++...+...-.|+||+|.+|+||++.+||+||+.||||+..+....++.......+.  +-.+++|.+
T Consensus        53 vpi~~~~~vvLVrQyR~~~~~~~lEiPaG~id~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~--~e~~~~flA  130 (185)
T PRK11762         53 VPILDDDTLLLIREYAAGTESYELGFPKGLIDPGETPEEAANRELKEEVGFGARQLTFLKELSLAPSYF--SSKMNIVLA  130 (185)
T ss_pred             EEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--CCEEEEEEE
T ss_conf             997599979999933688888799824305899969899999998897697747689975998377311--532999998


Q ss_pred             EEECCE-EC--CCHHHEEEECCHHHHCCC
Q ss_conf             975483-76--882331570277883248
Q gi|254780325|r   96 HCFEGI-PQ--SCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        96 ~~~~~~-~~--~~E~~~~~Wi~~~el~~~  121 (141)
                      +..... ..  ..|.-+..+++++++.++
T Consensus       131 ~~l~~~~~~~De~E~iev~~~~~~e~~~m  159 (185)
T PRK11762        131 QDLYPERLEGDEPEPLEVVRWPLADLDEL  159 (185)
T ss_pred             CCCCCCCCCCCCCCCEEEEEECHHHHHHH
T ss_conf             58605667999984149999769999999


No 63 
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread  A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to 
Probab=99.57  E-value=3.2e-14  Score=102.37  Aligned_cols=114  Identities=26%  Similarity=0.513  Sum_probs=93.1

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE
Q ss_conf             99999935986999991789888983822573101787488999988887626520244202556652057886069999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF   92 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (141)
                      .+.++++++|+|||.||+.++-++|+|+||++..+.++..+++..++...+.+...     ....++.|.|+|+++.+.+
T Consensus         5 ~~~~ii~~~~~iLl~kRp~~Gll~gLwefP~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~H~fSH~~l~~~~   79 (118)
T cd03431           5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSL-----EPLGTVKHTFTHFRLTLHV   79 (118)
T ss_pred             EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCEEEEEECCEEEEEEE
T ss_conf             99999977999999988999845653007866556564627999876665530122-----1044041342417999999


Q ss_pred             EEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHH
Q ss_conf             999975483768823315702778832488973698999999
Q gi|254780325|r   93 FVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFL  134 (141)
Q Consensus        93 ~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l  134 (141)
                      |.|+.......   ..+++|++++++.+++|+.+.+++++.|
T Consensus        80 ~~~~~~~~~~~---~~~~~Wv~~~~l~~~~~p~~~~Kil~~l  118 (118)
T cd03431          80 YLARLEGDLLA---PDEGRWVPLEELDEYALPTVMRKILELL  118 (118)
T ss_pred             EEEEECCCCCC---CCCCEEEEHHHCCCCCCCHHHHHHHHHC
T ss_conf             99996379878---9888997678854068987999999759


No 64 
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD; InterPro: IPR014078   The proteins in this entry belong to the nudix family and share some sequence identity with Escherichia coli MutT but appear not to be functionally interchangeable with it. The functional assignment of the proteins in this family is contentious. Reference  challenges the findings of reference , both in interpretation and in enzyme assay results..
Probab=99.52  E-value=3e-14  Score=102.51  Aligned_cols=86  Identities=26%  Similarity=0.340  Sum_probs=56.3

Q ss_pred             CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             78649999999993598699999178988898382257310178748899998888762652024420255665205788
Q gi|254780325|r    6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus         6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      |..+-+|=  +|-+-+|+.|+..-.    ..|+ +|||||+|.|||+++||+|||+||||-.+....++  ..+.-...+
T Consensus        22 ~~~p~HVl--vip~~~~qWLlT~H~----~RGl-EFPGGKvE~GEt~~eAA~REv~EETGA~v~~l~Y~--gQY~Ve~~~   92 (158)
T TIGR02705        22 SPNPNHVL--VIPRYKDQWLLTEHK----RRGL-EFPGGKVEEGETSKEAAIREVYEETGAIVKELHYI--GQYEVEGED   92 (158)
T ss_pred             CCCCCCEE--EEEEECCEEEECCCC----CCCC-CCCCCEECCCCCHHHHHHEECCCCCCEEEEEEEEE--EEEEEECCC
T ss_conf             88969568--975568933440358----7870-47888007998846765100100358075468888--767875899


Q ss_pred             -CEEEEEEEEEEEECC
Q ss_conf             -606999999997548
Q gi|254780325|r   86 -FHLLMPFFVCHCFEG  100 (141)
Q Consensus        86 -~~~~~~~~~~~~~~~  100 (141)
                       ..++=-+|.+++.+-
T Consensus        93 ~~~f~K~vYfa~V~~l  108 (158)
T TIGR02705        93 DTDFVKDVYFAEVSAL  108 (158)
T ss_pred             CCEEEEEEEEEEEEEE
T ss_conf             9665777668899873


No 65 
>KOG3084 consensus
Probab=99.50  E-value=4.2e-15  Score=107.47  Aligned_cols=106  Identities=27%  Similarity=0.360  Sum_probs=74.1

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC-CCCCEE
Q ss_conf             9999999993598699999178988898382257310178748899998888762652024420255665205-788606
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHP-YEKFHL   88 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~-~~~~~~   88 (141)
                      -.+|..+|++.+|+.+++.|.+. +-+|+|..+.|++|+|||.++|++||++||+|++++...+.  .+..++ ++- .+
T Consensus       187 dPvVIm~li~~d~~~~LL~R~~r-~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~--asQPWP~~p~-SL  262 (345)
T KOG3084         187 DPVVIMLLIDHDGKHALLGRQKR-YPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV--ASQPWPLMPQ-SL  262 (345)
T ss_pred             CCEEEEEEECCCCCEEEEECCCC-CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE--ECCCCCCCCH-HH
T ss_conf             98699999768887741001467-99960100000277550299999998899749541357665--0489899966-89


Q ss_pred             EEEEEEEEEECCEECC--C-HHHEEEECCHHHHC
Q ss_conf             9999999975483768--8-23315702778832
Q gi|254780325|r   89 LMPFFVCHCFEGIPQS--C-EGQQLQWVALDDLQ  119 (141)
Q Consensus        89 ~~~~~~~~~~~~~~~~--~-E~~~~~Wi~~~el~  119 (141)
                      .+.++......+.+..  . |-++.+|++.+++.
T Consensus       263 MIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~  296 (345)
T KOG3084         263 MIGCLALAKLNGKISVDKDLELEDAQWFDREEVK  296 (345)
T ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHH
T ss_conf             9999999861785123753454423442499999


No 66 
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=99.45  E-value=3.3e-12  Score=90.80  Aligned_cols=110  Identities=37%  Similarity=0.468  Sum_probs=68.6

Q ss_pred             EEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC----
Q ss_conf             999999359-869999917898889838225731017874889-99988887626520244202556652057886----
Q gi|254780325|r   13 VACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEE-ALTRELFEELAIVVKPFSLVPLTFISHPYEKF----   86 (141)
Q Consensus        13 v~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~-a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~----   86 (141)
                      +.+.+.... +++|+.+|....   +.|.||||++++||++.+ ||+||+.||||+.+..........+.......    
T Consensus        14 ~~~~~~~~~~~~vl~~~~~~~~---~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~   90 (161)
T COG0494          14 VAVLVGRDGPGEVLLAQRRDDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVG   90 (161)
T ss_pred             EEEEEEECCCCEEEEEEEECCC---CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCC
T ss_conf             9999961888799999984799---9599088855899987899999999998788131520289999966654332112


Q ss_pred             -EEEEEEEEEEE---ECCEEC-----CCHHHEEEECCHHHHCCCCCCC
Q ss_conf             -06999999997---548376-----8823315702778832488973
Q gi|254780325|r   87 -HLLMPFFVCHC---FEGIPQ-----SCEGQQLQWVALDDLQNYSMLP  125 (141)
Q Consensus        87 -~~~~~~~~~~~---~~~~~~-----~~E~~~~~Wi~~~el~~~~~~~  125 (141)
                       .....++.+..   ....+.     ..+..++.|++.+++.......
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  138 (161)
T COG0494          91 GREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE  138 (161)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCC
T ss_conf             157999999961344343334666654210104765667866553022


No 67 
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.43  E-value=1.6e-12  Score=92.59  Aligned_cols=107  Identities=18%  Similarity=0.162  Sum_probs=67.2

Q ss_pred             EEEEEEE-CCCEEEEEEECCCC-----CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             9999993-59869999917898-----88983822573101787488999988887626520244202556652057886
Q gi|254780325|r   13 VACAVFE-PGGKVLLSCRPKDK-----SHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF   86 (141)
Q Consensus        13 v~~~ii~-~~~~iLl~~R~~~~-----~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~   86 (141)
                      |+++.++ ..++|+|.+.-.-+     ..|-+|++|+|.+|+||++++||+||+.||||+.+..  +.++.++...-+..
T Consensus        52 v~vL~yDp~~d~vvLveQfR~~~~~~~~~~wllEipAG~id~gE~p~~~A~REl~EEtG~~~~~--l~~l~~~~~SPG~s  129 (202)
T PRK10729         52 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGR--TKPVLSYLASPGGT  129 (202)
T ss_pred             EEEEEEECCCCEEEEEEECCCHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC--EEEEEEEECCCCCC
T ss_conf             9999980778969999823512203799963999402033899798999999988875958052--89977881689753


Q ss_pred             EEEEEEEEEEEECCEEC-----CCHH--HEEEECCHHHHCCC
Q ss_conf             06999999997548376-----8823--31570277883248
Q gi|254780325|r   87 HLLMPFFVCHCFEGIPQ-----SCEG--QQLQWVALDDLQNY  121 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~~~-----~~E~--~~~~Wi~~~el~~~  121 (141)
                      +-.+++|.+........     ..|+  -...|++++++.++
T Consensus       130 ~E~i~lf~a~~d~~~~~~~~gl~dE~EdI~v~~v~~~ea~~~  171 (202)
T PRK10729        130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW  171 (202)
T ss_pred             CEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHH
T ss_conf             315999999802533456788899996579999679999999


No 68 
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.42  E-value=3.2e-12  Score=90.87  Aligned_cols=104  Identities=20%  Similarity=0.240  Sum_probs=66.8

Q ss_pred             EEEEEEECC-C--EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEEEEECCCC--CC
Q ss_conf             999999359-8--69999917898889838225731017874889999888876265202442-025566520578--86
Q gi|254780325|r   13 VACAVFEPG-G--KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS-LVPLTFISHPYE--KF   86 (141)
Q Consensus        13 v~~~ii~~~-~--~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~-~~~~~~~~~~~~--~~   86 (141)
                      ++++.++.+ |  +|||+.+.+.    |.|.||+|.++.|||+.+||.||+.||+|+...... .++...+.....  ..
T Consensus         3 agal~~r~~~g~~eVLLItsr~~----~rWilPKG~~e~~es~~~aA~REa~EEAGv~g~i~~~~lG~~~y~k~~~~~~~   78 (122)
T cd04666           3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPP   78 (122)
T ss_pred             EEEEEEEECCCCEEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCC
T ss_conf             99999997399089999992699----94998875367998999998888887429488886758889999982799853


Q ss_pred             EEEEEEEEEEEECCEECCCH--HHEEEECCHHHHCC
Q ss_conf             06999999997548376882--33157027788324
Q gi|254780325|r   87 HLLMPFFVCHCFEGIPQSCE--GQQLQWVALDDLQN  120 (141)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~E--~~~~~Wi~~~el~~  120 (141)
                      ...+.+|...+......-.|  ...-+|+++++...
T Consensus        79 ~~~V~~f~~~V~~~~~~wpE~~~R~R~W~s~~eA~~  114 (122)
T cd04666          79 RCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAAL  114 (122)
T ss_pred             CEEEEEEEEEEEEECCCCCCCCCEEEEECCHHHHHH
T ss_conf             199999999998511259975867999938999998


No 69 
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.24  E-value=3.1e-10  Score=79.36  Aligned_cols=116  Identities=22%  Similarity=0.327  Sum_probs=79.4

Q ss_pred             EEEEEEECCCC-CCCCCEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEEEEEC--CCCC--C-EEEEEEEE
Q ss_conf             69999917898-8898382-25731017874889999888876265202442-025566520--5788--6-06999999
Q gi|254780325|r   23 KVLLSCRPKDK-SHGEFWE-FPGGKIEDGETPEEALTRELFEELAIVVKPFS-LVPLTFISH--PYEK--F-HLLMPFFV   94 (141)
Q Consensus        23 ~iLl~~R~~~~-~~~g~W~-lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~-~~~~~~~~~--~~~~--~-~~~~~~~~   94 (141)
                      ++-++||+..+ .+||+|+ ..+|.+..|||+.+|++||+.||+||..+..+ ..+...+++  ....  . .-+.++|.
T Consensus        49 ~lWv~rRs~~K~~~Pg~~D~~vaGg~~~g~~~~~~~~rE~~EEagi~~~l~~~~~~~G~isy~~~~~~~gl~~e~~~vYd  128 (180)
T cd03676          49 RIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYD  128 (180)
T ss_pred             EEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCEECEEEEEEEECCCCCCCCCEEEEEE
T ss_conf             99986268987789975301111366799899999999999881999899831551117999987687773553899999


Q ss_pred             EEEECC-EECCC--HHHEEEECCHHHHCC----CCCCC-CCHHHHHHHHHHC
Q ss_conf             997548-37688--233157027788324----88973-6989999998721
Q gi|254780325|r   95 CHCFEG-IPQSC--EGQQLQWVALDDLQN----YSMLP-ADLSLISFLRKHA  138 (141)
Q Consensus        95 ~~~~~~-~~~~~--E~~~~~Wi~~~el~~----~~~~~-~~~~ii~~l~~~~  138 (141)
                      ...... .|++.  |++++.|++.+++.+    -+|-| ..--+++.|.+|+
T Consensus       129 l~lp~d~~P~~~DGEVe~F~l~~v~ev~~~l~~g~Fkpn~alviiDfliRhG  180 (180)
T cd03676         129 LELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTLDFLIRHG  180 (180)
T ss_pred             EEECCCCEECCCCCCEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHCC
T ss_conf             9828996057999866369996599999999739976520889776684069


No 70 
>KOG2839 consensus
Probab=99.23  E-value=2.4e-11  Score=85.85  Aligned_cols=108  Identities=26%  Similarity=0.301  Sum_probs=67.8

Q ss_pred             EEEEEEEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC
Q ss_conf             9999999993598---6999991789888983822573101787488999988887626520244202556652057886
Q gi|254780325|r   10 LLVVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF   86 (141)
Q Consensus        10 ~~vv~~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~   86 (141)
                      ..+++|+.++.++   ++||+.-+++   +..|-+|+|++|++||..+||.||+.||.|+........+...-.-++.+.
T Consensus         9 r~vagCi~~r~~~~~ieVLlvsSs~~---~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~   85 (145)
T KOG2839           9 RLVAGCICYRSDKEKIEVLLVSSSKK---PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHR   85 (145)
T ss_pred             EEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCHHHC
T ss_conf             89977655630576137999966889---987627899778997688999999998717555411002412110584223


Q ss_pred             EEE-EEEE-EE--EEECCEECC-CHHHEEEECCHHHHCC
Q ss_conf             069-9999-99--975483768-8233157027788324
Q gi|254780325|r   87 HLL-MPFF-VC--HCFEGIPQS-CEGQQLQWVALDDLQN  120 (141)
Q Consensus        87 ~~~-~~~~-~~--~~~~~~~~~-~E~~~~~Wi~~~el~~  120 (141)
                      ... .+.| ..  .....-|.. .++.+.+|++++|.-.
T Consensus        86 ~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~  124 (145)
T KOG2839          86 TKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIE  124 (145)
T ss_pred             CCCCCEEEHHHHHHHCCCCHHHHCCCCEEEEEEHHHHHH
T ss_conf             640306543344553036764511122257766988999


No 71 
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.21  E-value=8e-11  Score=82.79  Aligned_cols=78  Identities=22%  Similarity=0.299  Sum_probs=55.4

Q ss_pred             EEEEEEEC-CC--EEEEEEECCCCC----CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             99999935-98--699999178988----898382257310178748899998888762652024420255665205788
Q gi|254780325|r   13 VACAVFEP-GG--KVLLSCRPKDKS----HGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus        13 v~~~ii~~-~~--~iLl~~R~~~~~----~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      +++++.+. ++  +|||++.. .+.    ..|-|.+|.|+++.||++.+||+||+.||||+.++ ..++.+..+....+ 
T Consensus         3 AG~ll~R~~~g~~EVLLvHpG-GPfW~rkd~g~WsiPKG~~e~gE~p~~aA~RE~~EEtG~~~~-G~~~~Lg~~rq~gG-   79 (126)
T cd04662           3 AGILLYRFRDGRIEVLLVHPG-GPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQSGG-   79 (126)
T ss_pred             CEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCEECCCC-
T ss_conf             408889964997699998059-986467778861687877899879899999999976189989-86104601054799-


Q ss_pred             CEEEEEEEEE
Q ss_conf             6069999999
Q gi|254780325|r   86 FHLLMPFFVC   95 (141)
Q Consensus        86 ~~~~~~~~~~   95 (141)
                      +  .+++|.+
T Consensus        80 K--~V~~WA~   87 (126)
T cd04662          80 K--VVHAWAV   87 (126)
T ss_pred             C--EEEEEEE
T ss_conf             8--9999988


No 72 
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are 
Probab=99.21  E-value=3.4e-11  Score=84.96  Aligned_cols=100  Identities=25%  Similarity=0.378  Sum_probs=58.3

Q ss_pred             EEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             99993598---699999178988898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   15 CAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        15 ~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      .+++++++   ++|+-+-   + .+| |++|||.+|+|||+++||.||+.|||||..-..... +......+...+-.-+
T Consensus         4 pvv~r~~~~~~elL~f~h---p-~~g-~q~p~G~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~-l~~~~~~~~~~rh~wH   77 (126)
T cd04663           4 PAVLRRNGEVLELLVFEH---P-LAG-FQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYI-LHVWERRFYQKRHFWH   77 (126)
T ss_pred             CEEEECCCCEEEEEEEEC---C-CCC-EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-EECCCCCEEEECEEEE
T ss_conf             689961697068999817---8-885-476576758998989999999888768764202557-5136587076032799


Q ss_pred             EEEEEEECCEECC-------CHHH--EEEECCHHHHCC
Q ss_conf             9999975483768-------8233--157027788324
Q gi|254780325|r   92 FFVCHCFEGIPQS-------CEGQ--QLQWVALDDLQN  120 (141)
Q Consensus        92 ~~~~~~~~~~~~~-------~E~~--~~~Wi~~~el~~  120 (141)
                      +..|+.....|..       ..+.  .+.|+++....+
T Consensus        78 ~~l~e~~~~lpdtW~H~~~ddgG~~F~FFW~dl~~~p~  115 (126)
T cd04663          78 LTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD  115 (126)
T ss_pred             EEEECCCCCCCCCCEEEECCCCCEEEEEEEEECCCCHH
T ss_conf             99800478897543367058996589999878244905


No 73 
>PRK10880 adenine DNA glycosylase; Provisional
Probab=99.19  E-value=1.5e-10  Score=81.19  Aligned_cols=119  Identities=18%  Similarity=0.219  Sum_probs=86.2

Q ss_pred             EEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEE
Q ss_conf             49999999993598699999178988898382257310178748899998888762652024420255665205788606
Q gi|254780325|r    9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL   88 (141)
Q Consensus         9 ~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~   88 (141)
                      +......+++.++|++||.||+..+.++|+|+||.  .     ..+...++...+.|+....  ......+.|.++|+++
T Consensus       229 p~~~~~~~ii~~~~~ill~kR~~~giw~gLw~fP~--~-----~~~~~~~~~~~~~~~~~~~--~~~l~~~~H~FSHf~L  299 (350)
T PRK10880        229 PERTGYFLLLQHEDEVWLAQRPPSGLWGGLYCFPQ--F-----ADEEELRQWLAQRGINADN--LTQLTAFRHTFSHFHL  299 (350)
T ss_pred             CEEEEEEEEEEECCEEEEEECCCCCHHHHCCCCCC--C-----CCHHHHHHHHHHCCCCCCC--CEECCCEEEEEECEEE
T ss_conf             77999999995099899983797773454454888--8-----8677899999982898100--0114762584106076


Q ss_pred             EEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             9999999975483768823315702778832488973698999999872
Q gi|254780325|r   89 LMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH  137 (141)
Q Consensus        89 ~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~  137 (141)
                      .+..+........ ...+..+..|++++++.++.++.+-+++++.|+.-
T Consensus       300 ~I~p~~~~~~~~~-~~~~~~~~~W~~~~~~~~~GLPaPvkKiL~~L~~~  347 (350)
T PRK10880        300 DIVPMWLPVSSFT-GCMDEGNALWYNLAQPPSVGLAAPVERLLQQLRTG  347 (350)
T ss_pred             EEEEEEEEECCCC-CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC
T ss_conf             7389999814500-13556678564445302047878999999971404


No 74 
>KOG0648 consensus
Probab=99.08  E-value=1.4e-10  Score=81.37  Aligned_cols=111  Identities=18%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             EEEEEEECCCEEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE
Q ss_conf             999999359869999917898-8898382257310178748899998888762652024420255665205788606999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP   91 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~-~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~   91 (141)
                      +++.++|.++++|+.+-.... ...|.|-+|+|+++++|++-++++||++||||++..-..++.+.......-...-...
T Consensus       118 vg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~  197 (295)
T KOG0648         118 VGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDM  197 (295)
T ss_pred             EEEEEECCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCC
T ss_conf             01367368863678972255323126510561375366540134555567775764154667778764111332134651


Q ss_pred             EEEEEEE--CCEECC--CHHHEEEECCHHHHCCCCC
Q ss_conf             9999975--483768--8233157027788324889
Q gi|254780325|r   92 FFVCHCF--EGIPQS--CEGQQLQWVALDDLQNYSM  123 (141)
Q Consensus        92 ~~~~~~~--~~~~~~--~E~~~~~Wi~~~el~~~~~  123 (141)
                      ||.|...  +..++.  .|...++|++.++.-+.++
T Consensus       198 f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~  233 (295)
T KOG0648         198 FFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPL  233 (295)
T ss_pred             EEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHCCCC
T ss_conf             059996346444316589999875255777630500


No 75 
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=99.05  E-value=1.4e-09  Score=75.66  Aligned_cols=113  Identities=21%  Similarity=0.260  Sum_probs=79.4

Q ss_pred             EEEEEEEEEECCCEEEEEEECCC-CCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE---EEEEEEECCCC
Q ss_conf             99999999935986999991789-888983822-57310178748899998888762652024420---25566520578
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKD-KSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSL---VPLTFISHPYE   84 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~---~~~~~~~~~~~   84 (141)
                      +..-.+.|++.+|++|++||+.. ..+|+.|.= .-|+--+|||.++|++|-+.+|+||..+....   .+-..+...+.
T Consensus        33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~  112 (185)
T COG1443          33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP  112 (185)
T ss_pred             HHHHHEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC
T ss_conf             74310468678886631014453255766343654279868874188999988998399875447402146517863589


Q ss_pred             CC---EEEEEEEEEEEE-CCEECCCHHHEEEECCHHHHCCCC
Q ss_conf             86---069999999975-483768823315702778832488
Q gi|254780325|r   85 KF---HLLMPFFVCHCF-EGIPQSCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        85 ~~---~~~~~~~~~~~~-~~~~~~~E~~~~~Wi~~~el~~~~  122 (141)
                      +.   +-+.+++.++.. .-.|.+.|+++++|++++++.+..
T Consensus       113 ~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~  154 (185)
T COG1443         113 DGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMV  154 (185)
T ss_pred             CCCCEEEEEEEEEEEECCCCCCCHHHHHHEECCCHHHHHHHH
T ss_conf             875300241388886137787996886241126899998752


No 76 
>KOG3069 consensus
Probab=99.05  E-value=1.1e-09  Score=76.22  Aligned_cols=99  Identities=22%  Similarity=0.185  Sum_probs=64.9

Q ss_pred             CEEEEEEECCCC-CCCCCEECCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE-EEEEEEEE-
Q ss_conf             869999917898-88983822573101787-488999988887626520244202556652057886069-99999997-
Q gi|254780325|r   22 GKVLLSCRPKDK-SHGEFWEFPGGKIEDGE-TPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL-MPFFVCHC-   97 (141)
Q Consensus        22 ~~iLl~~R~~~~-~~~g~W~lPGG~ve~gE-s~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-   97 (141)
                      -++|++||+.+- .++|.=+||||+.|+.+ |..+||.||..||.|++.....+.+...-.....+..+. +..|..+. 
T Consensus        58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~  137 (246)
T KOG3069          58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK  137 (246)
T ss_pred             EEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCEEEEEEECCC
T ss_conf             68999833563335687155788767834450488898878987399988825642154404526763130689973143


Q ss_pred             --ECCEECCCHHHEEEECCHHHHCC
Q ss_conf             --54837688233157027788324
Q gi|254780325|r   98 --FEGIPQSCEGQQLQWVALDDLQN  120 (141)
Q Consensus        98 --~~~~~~~~E~~~~~Wi~~~el~~  120 (141)
                        ....+...|+.++.|++++++..
T Consensus       138 ~l~~~~ln~gEv~~~F~VPL~~ll~  162 (246)
T KOG3069         138 ILPSLRLNSGEVESAFWVPLTDLLL  162 (246)
T ss_pred             CCCCCCCCCHHEEEEEEEEHHHHHH
T ss_conf             3421358802402332201899732


No 77 
>PRK13910 DNA glycosylase MutY; Provisional
Probab=98.91  E-value=3e-09  Score=73.75  Aligned_cols=97  Identities=21%  Similarity=0.312  Sum_probs=70.2

Q ss_pred             EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE
Q ss_conf             99993598699999178988898382257310178748899998888762652024420255665205788606999999
Q gi|254780325|r   15 CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFV   94 (141)
Q Consensus        15 ~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (141)
                      .+++.+++++||.+|. .+.++|+|+||.-                +|+.+....     .+..+.|.++++++.+.+|.
T Consensus       191 ~~~i~~~~~ilL~k~~-~~~~~Glw~fP~~----------------ke~~~~~~~-----~l~~ikH~fTH~kl~i~v~~  248 (290)
T PRK13910        191 LGVVIQNNQIALEKIE-QKLYLGMHHFPNL----------------KENLEFKLP-----FLGAIKHSHTKFKLNLNLYL  248 (290)
T ss_pred             EEEEEECCEEEEEECC-CCCCCCCCCCCCC----------------CCCCCCCHH-----HHHHCEEEEEEEEEEEEEEE
T ss_conf             9999989999998178-8666776659998----------------755565402-----33000001565779999998


Q ss_pred             EEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             997548376882331570277883248897369899999987215
Q gi|254780325|r   95 CHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHAL  139 (141)
Q Consensus        95 ~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~~  139 (141)
                      +...+      .....+|++++|+.+++++.+++++++.|++..+
T Consensus       249 ~~~k~------~~~~~~W~~l~el~~l~lps~~kKIL~~Lk~~~l  287 (290)
T PRK13910        249 AAIKD------LKNPIRFYSLKDLETLPISSMTLKILNFLKQKNL  287 (290)
T ss_pred             EHHHC------CCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCC
T ss_conf             54105------8987743167775208898289999999977455


No 78 
>KOG3041 consensus
Probab=98.88  E-value=1.6e-08  Score=69.50  Aligned_cols=107  Identities=26%  Similarity=0.266  Sum_probs=62.8

Q ss_pred             EEEEEEECCCE--EEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE
Q ss_conf             99999935986--9999917898889838225731017874889999888876265202442025566520578860699
Q gi|254780325|r   13 VACAVFEPGGK--VLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM   90 (141)
Q Consensus        13 v~~~ii~~~~~--iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~   90 (141)
                      ++.+++..+|+  |++++.-+-|.-+-+-+||.|-++.||+++.||+||++||||+.-+....-......-.+++-+..+
T Consensus        77 aIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~i  156 (225)
T KOG3041          77 AILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCI  156 (225)
T ss_pred             EEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCEEE
T ss_conf             99999804896899997750489774789723554348976678889988887485531441263077279888871589


Q ss_pred             EEEEEEEE--CC-EEC----CCHHHEEEECCHHHHC
Q ss_conf             99999975--48-376----8823315702778832
Q gi|254780325|r   91 PFFVCHCF--EG-IPQ----SCEGQQLQWVALDDLQ  119 (141)
Q Consensus        91 ~~~~~~~~--~~-~~~----~~E~~~~~Wi~~~el~  119 (141)
                      .++..+..  .+ .|.    ..|.-+..-++..++.
T Consensus       157 v~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~  192 (225)
T KOG3041         157 VVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELW  192 (225)
T ss_pred             EEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHH
T ss_conf             999943887101586656788856999984188899


No 79 
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P.  Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=98.54  E-value=4.7e-07  Score=61.05  Aligned_cols=108  Identities=18%  Similarity=0.302  Sum_probs=62.9

Q ss_pred             EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC------------------CEEEEEEEECC-C
Q ss_conf             6999991789888983822573101787488999988887626520244------------------20255665205-7
Q gi|254780325|r   23 KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF------------------SLVPLTFISHP-Y   83 (141)
Q Consensus        23 ~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~------------------~~~~~~~~~~~-~   83 (141)
                      +++..+|..+    +.|.||||.+++||+...+++||+.||..-.++..                  ..++.+.+..+ .
T Consensus        50 efvai~r~d~----~~WAlPGGmVdpGE~vs~tL~Ref~eEal~~~~~~~~~~~~~~~~~~~~~~~g~~vY~GYVDDpRN  125 (186)
T cd03670          50 QFVAIKRPDS----GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRN  125 (186)
T ss_pred             EEEEEEECCC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC
T ss_conf             8999983488----854247652678840508999999999988653136777888889998860881996213489766


Q ss_pred             CCCEEEE-EEEEEEEECCE------EC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             8860699-99999975483------76-882331570277883248897369899999987
Q gi|254780325|r   84 EKFHLLM-PFFVCHCFEGI------PQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRK  136 (141)
Q Consensus        84 ~~~~~~~-~~~~~~~~~~~------~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~  136 (141)
                      ++.-|+- ..+.....+++      ++ ..+...++|+..+.  ..++.+.+..+|+...+
T Consensus       126 TDNAWmETvavnfHd~~g~~~~~l~L~agDda~~v~W~~vd~--~~~LyAsH~~~l~~va~  184 (186)
T cd03670         126 TDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDS--KLPLYANHSQFLKKVAE  184 (186)
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHH
T ss_conf             654104567789864874501346400488641038998899--98510179999999986


No 80 
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=98.49  E-value=9.4e-07  Score=59.33  Aligned_cols=98  Identities=28%  Similarity=0.398  Sum_probs=67.5

Q ss_pred             CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEEEEECCCCC-------CEEEEEE
Q ss_conf             869999917898889838225731017874889999888876265202442--0255665205788-------6069999
Q gi|254780325|r   22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS--LVPLTFISHPYEK-------FHLLMPF   92 (141)
Q Consensus        22 ~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~--~~~~~~~~~~~~~-------~~~~~~~   92 (141)
                      .-+||++...  ...+.|.||-|..+.|||+.+||.|.+.|.+|-++...-  -.+++...+.++.       ...-++|
T Consensus        13 tLyLlVk~k~--g~~~~W~fP~~~~~~~EtLr~~Aer~L~~~~G~~~~~~~vgnaP~g~~k~k~p~~~~~~~~~G~K~Ff   90 (132)
T cd04661          13 TLVLLVQQKV--GSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF   90 (132)
T ss_pred             EEEEEEEECC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEE
T ss_conf             3999999537--98888028842466785489999999998607773678962687588987568522444666347999


Q ss_pred             EEEEEECCEECCC-HHHEEEECCHHHHCCC
Q ss_conf             9999754837688-2331570277883248
Q gi|254780325|r   93 FVCHCFEGIPQSC-EGQQLQWVALDDLQNY  121 (141)
Q Consensus        93 ~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~  121 (141)
                      |.+...+|..... ...++.|++.+||.++
T Consensus        91 ~ka~~~~G~~~~~~~~~df~Wltk~EL~~~  120 (132)
T cd04661          91 FKARYMSGQFELSQNQVDFKWLAKEELQKY  120 (132)
T ss_pred             EEEEEECCCCCCCCCCCEEEECCHHHHHHH
T ss_conf             999995586465677520387089999876


No 81 
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=98.48  E-value=8.9e-07  Score=59.45  Aligned_cols=122  Identities=23%  Similarity=0.316  Sum_probs=76.6

Q ss_pred             EEEEEEEC-CC--EEEEEEECCCCCC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             99999935-98--6999991789888----98382257310178748899998888762652024420255665205788
Q gi|254780325|r   13 VACAVFEP-GG--KVLLSCRPKDKSH----GEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus        13 v~~~ii~~-~~--~iLl~~R~~~~~~----~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      ++..+.+. +|  .+||++ +-.+.+    -|-|.+|.|-...||.+.-||+||..||+||.++- .++.+.+...+...
T Consensus         6 AGvLlYR~~aG~v~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdG-P~~~lG~~kQ~GGK   83 (161)
T COG4119           6 AGVLLYRARAGVVDVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDG-PRIDLGSLKQSGGK   83 (161)
T ss_pred             CEEEEEEECCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECC-CHHHHHHHCCCCCC
T ss_conf             2169998058978999965-899733147777410566654788677788888766651235247-06554343057970


Q ss_pred             CEEEEEEEEEEE-----EC-----------CEEC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             606999999997-----54-----------8376-88233157027788324889736989999998721
Q gi|254780325|r   86 FHLLMPFFVCHC-----FE-----------GIPQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA  138 (141)
Q Consensus        86 ~~~~~~~~~~~~-----~~-----------~~~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~  138 (141)
                      . ++.+-..++.     .+           |..+ --|++...|+++.+... .+..+.++.++.|..|.
T Consensus        84 v-Vta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~-Kil~gQRpfldrL~a~~  151 (161)
T COG4119          84 V-VTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEART-KILKGQRPFLDRLMAHA  151 (161)
T ss_pred             E-EEEEEEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEECHHHHH-HHHHCCCHHHHHHHHHH
T ss_conf             8-99986431033435315603665699888643176543226346178786-77604552789999874


No 82 
>KOG0142 consensus
Probab=98.24  E-value=1.3e-06  Score=58.52  Aligned_cols=130  Identities=19%  Similarity=0.291  Sum_probs=82.9

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-----CC---CCCCC--CCCHHHHHHHHHHHHHCCCCC---CCCEEE
Q ss_conf             999999999359869999917898-88983822-----57---31017--874889999888876265202---442025
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-----PG---GKIED--GETPEEALTRELFEELAIVVK---PFSLVP   75 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-----PG---G~ve~--gEs~~~a~~REv~EEtgi~~~---~~~~~~   75 (141)
                      +..-.+.+++.+|+.||++|+..+ .+|++|.=     |=   |..+.  +.....||+|-+.-|+||...   +.++..
T Consensus        52 HRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~e~d~lGvr~AAqRkL~~ELGIp~e~v~pee~~~  131 (225)
T KOG0142          52 HRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNF  131 (225)
T ss_pred             HHEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCEE
T ss_conf             32046898658514776540354411650555324248477866630574276899999987776199723068788100


Q ss_pred             EEEEECC------CCCCEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCC--CCCCCCHHHHHHHHHHCC
Q ss_conf             5665205------788606999999997548376882331570277883248--897369899999987215
Q gi|254780325|r   76 LTFISHP------YEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNY--SMLPADLSLISFLRKHAL  139 (141)
Q Consensus        76 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~--~~~~~~~~ii~~l~~~~~  139 (141)
                      ++.+.|.      .+...+.+.+|......-.|.++|+.+++|++++++.++  ....+-.|++..+-++++
T Consensus       132 ltrihYkA~sdg~wGEhEIDYiL~~~~~~~lnPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l  203 (225)
T KOG0142         132 LTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFL  203 (225)
T ss_pred             HEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHEECHHHHHHHHHCCCCCCCHHHHHHHHHHH
T ss_conf             114576157888754001347999843678897844555721126999999985566688859999999899


No 83 
>KOG4195 consensus
Probab=98.10  E-value=1.4e-05  Score=52.49  Aligned_cols=109  Identities=20%  Similarity=0.396  Sum_probs=61.7

Q ss_pred             EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCC----E-------EEEEEEECC-CCCCEE
Q ss_conf             699999178988898382257310178748899998888762--65202442----0-------255665205-788606
Q gi|254780325|r   23 KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL--AIVVKPFS----L-------VPLTFISHP-YEKFHL   88 (141)
Q Consensus        23 ~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEt--gi~~~~~~----~-------~~~~~~~~~-~~~~~~   88 (141)
                      +++.+||+.+    |.|.+|||.+|+||....+++||..||.  ++.-....    +       ++-+.+..+ .++.-|
T Consensus       140 e~vavkr~d~----~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYvDDpRNTDNaW  215 (275)
T KOG4195         140 EFVAVKRPDN----GEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYVDDPRNTDNAW  215 (275)
T ss_pred             EEEEEECCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCC
T ss_conf             8999864788----742378776781234439999998998777876535889999997288288610027887665500


Q ss_pred             EEE-EEEEEEECCEE------C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             999-99999754837------6-8823315702778832488973698999999872
Q gi|254780325|r   89 LMP-FFVCHCFEGIP------Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH  137 (141)
Q Consensus        89 ~~~-~~~~~~~~~~~------~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~  137 (141)
                      +-. .+.....+|..      . ..+...++|+..+  ..+++.+.+..+|+...+.
T Consensus       216 mET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn--~~l~LyAshs~fi~lvae~  270 (275)
T KOG4195         216 METVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVN--SNLPLYASHSQFIQLVAEK  270 (275)
T ss_pred             EEEEEEEEECCCCCHHCCCCCCCCCCCCCEEEEEEC--CCCCCHHHHHHHHHHHHHH
T ss_conf             267777664164311114431026763333679806--8863211589999999987


No 84 
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=98.08  E-value=5e-06  Score=55.14  Aligned_cols=107  Identities=21%  Similarity=0.347  Sum_probs=73.2

Q ss_pred             EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE
Q ss_conf             99999999935986999991789888983822573101787488999988887626520244202556652057886069
Q gi|254780325|r   10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL   89 (141)
Q Consensus        10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~   89 (141)
                      ...++.++.+.+|++++.+|...+-++|+|+||....+.  ...     +..-+.++..     ..+..+.|.++++++.
T Consensus       235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~~-----~~~~~~~~~~-----~~~~~~~H~fth~~l~  302 (342)
T COG1194         235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DLL-----DWLAADGLAA-----EPLGAFRHTFTHFRLT  302 (342)
T ss_pred             HHEEEEEEECCCCCHHHHHCCCCCCEECCCCCCCCCCCC--HHH-----HHHHHCCCCC-----CCCCCEEEEEEEEEEE
T ss_conf             003357787068531666276567221112056434332--046-----6765413210-----1243124346689999


Q ss_pred             EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             9999999754837688233157027788324889736989999998
Q gi|254780325|r   90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLR  135 (141)
Q Consensus        90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~  135 (141)
                      +. +.+....     ... +..|++++++..+.++..-.++++.++
T Consensus       303 i~-~~a~~~~-----~~~-~~~w~~~~~~~~~~l~~p~~k~l~~~~  341 (342)
T COG1194         303 IE-LRASASL-----VLS-DGRWYNLSDLESIGLPAPVKKLLQQLK  341 (342)
T ss_pred             EE-EEEECCC-----CCC-CCEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf             99-9863246-----788-734516344431355279999998732


No 85 
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1; InterPro: IPR011876    This entry represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0008299 isoprenoid biosynthetic process.
Probab=97.99  E-value=9.5e-05  Score=47.75  Aligned_cols=114  Identities=21%  Similarity=0.299  Sum_probs=73.2

Q ss_pred             EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEE-CCCCCCCC---CCC-----------HHHHHHHHHHHHHCCCCCCCC
Q ss_conf             4999999999359869999917898-8898382-25731017---874-----------889999888876265202442
Q gi|254780325|r    9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWE-FPGGKIED---GET-----------PEEALTRELFEELAIVVKPFS   72 (141)
Q Consensus         9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~-lPGG~ve~---gEs-----------~~~a~~REv~EEtgi~~~~~~   72 (141)
                      .+.+-.+-|++.++++||+||+..+ .+||.|. --=||=-+   ||-           ..+||+|-..-|+||..+...
T Consensus        29 LHrAFS~flfn~~~~LL~qrRa~~K~twP~vWTNsCCsHP~~q~~G~l~q~~~~~~~~Gvk~~A~RRl~~~LGi~~~~~~  108 (190)
T TIGR02150        29 LHRAFSVFLFNDQGRLLLQRRAASKITWPGVWTNSCCSHPLPQTPGTLAQSTLEENVLGVKNAAIRRLLAELGIPADDVD  108 (190)
T ss_pred             EEEEEEEEEECCCCCEEEEEECCCCCCCCCCEECCEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCC
T ss_conf             23136767771898368888401188437840034027878888885101146111103326788878763488512236


Q ss_pred             -----EEEEEEEECCC----CC-CEEEEEEEEEEE--ECCE--ECCCHHHEEEECCHHHHCCCC
Q ss_conf             -----02556652057----88-606999999997--5483--768823315702778832488
Q gi|254780325|r   73 -----LVPLTFISHPY----EK-FHLLMPFFVCHC--FEGI--PQSCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        73 -----~~~~~~~~~~~----~~-~~~~~~~~~~~~--~~~~--~~~~E~~~~~Wi~~~el~~~~  122 (141)
                           +++-..+.-.+    .. .+.+.++|.+..  .+..  |.+.+.+.++|++.+++.++.
T Consensus       109 ~~~~~~L~~~~Y~A~~~s~g~~G~h~~~~~~~~~~nk~~~~~~PnP~~v~~~~W~~~~~~~~~~  172 (190)
T TIGR02150       109 VDELTVLPRFSYRARDGSDGAWGIHEVCPVFFARKNKADVPVNPNPPEVAAIKWVSLEVLREVL  172 (190)
T ss_pred             HHHHHHCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHEEEECCHHHHHHHH
T ss_conf             7572003473366144345778758511589997234588876897224214402689999984


No 86 
>TIGR00052 TIGR00052 conserved hypothetical protein TIGR00052; InterPro: IPR004385    This entry describes a family of proteins which appear to catalyse the hydrolysis of phosphorus-containing acid anhydrides such as nucleoside diphosphate, for example ADP-mannose and UDP-glucose . Some of these enzymes play a key role in glycogen biosynthesis.; GO: 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding.
Probab=97.74  E-value=3.4e-05  Score=50.36  Aligned_cols=64  Identities=25%  Similarity=0.361  Sum_probs=49.3

Q ss_pred             CEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEECCE
Q ss_conf             382257310178-7488999988887626520244202556652057886069999999975483
Q gi|254780325|r   38 FWEFPGGKIEDG-ETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI  101 (141)
Q Consensus        38 ~W~lPGG~ve~g-Es~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (141)
                      .|++..|.|+.| |++|++|.||-.||||+.+.|.++..+.++...-+...=..++|.+.+.++.
T Consensus        88 tYe~~ag~v~~~n~~~E~~a~~EA~EE~G~~vsPk~~~~~~~~y~spGg~~el~~lf~aEv~~~~  152 (199)
T TIGR00052        88 TYELVAGMVEKGNESPEDVARREAIEEAGYQVSPKNLEKILSFYSSPGGVTELIHLFIAEVDKNQ  152 (199)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCHHHHHHHHHEHHHHH
T ss_conf             44554222530388666776554264468665586400233344068972021232110101454


No 87 
>KOG2937 consensus
Probab=97.67  E-value=9e-06  Score=53.67  Aligned_cols=107  Identities=20%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CCEEEEEEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC
Q ss_conf             864999999999359-8699999178988898382257310178748899998888762652024420255665205788
Q gi|254780325|r    7 KKILLVVACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK   85 (141)
Q Consensus         7 k~~~~vv~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~   85 (141)
                      |..+.+.+++|++.. .++|+++-.    .+.-|.||-|++...|+..+|++||+.||+|.+...--. ....+.....+
T Consensus        79 k~~iPv~ga~ild~~~sr~llv~g~----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~-~~e~Ie~nI~d  153 (348)
T KOG2937          79 KARIPVRGAIILDEKRSRCLLVKGW----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ-DNEGIETNIRD  153 (348)
T ss_pred             CCCCCCCHHHHHHHHHHHHEEEECE----ECCCCCCCCCCCCCCCHHHHCCHHCCCCHHHCCHHHHHC-CCCCCCEEHHH
T ss_conf             4778871676542366555001000----124555567665543212112211235212036888735-04585301320


Q ss_pred             CEEE---EEEEEEEEECCEECCCHHHEEEECCHHHH
Q ss_conf             6069---99999997548376882331570277883
Q gi|254780325|r   86 FHLL---MPFFVCHCFEGIPQSCEGQQLQWVALDDL  118 (141)
Q Consensus        86 ~~~~---~~~~~~~~~~~~~~~~E~~~~~Wi~~~el  118 (141)
                      ..+.   ..-+.++..-.-..-.|.+...|..++++
T Consensus       154 q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l  189 (348)
T KOG2937         154 QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL  189 (348)
T ss_pred             CEEEEEEECCCEEEEECCHHHHCCCCCEEEEEHHHH
T ss_conf             100356652613565115153245330244424210


No 88 
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=97.58  E-value=0.00077  Score=42.51  Aligned_cols=113  Identities=20%  Similarity=0.315  Sum_probs=63.9

Q ss_pred             CCCCCEEEEEEEEEEECCCEEEEEEECCCC---CCCCCEEC-CCCCCCCCCC---HHH----HHHHHHHHHHCCCCC---
Q ss_conf             447864999999999359869999917898---88983822-5731017874---889----999888876265202---
Q gi|254780325|r    4 VNLKKILLVVACAVFEPGGKVLLSCRPKDK---SHGEFWEF-PGGKIEDGET---PEE----ALTRELFEELAIVVK---   69 (141)
Q Consensus         4 ~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~---~~~g~W~l-PGG~ve~gEs---~~~----a~~REv~EEtgi~~~---   69 (141)
                      +..|.++.-   +++.+.++||+-.|-.++   ..-+++.+ .||++..++-   .++    .+.||+.||+++.-.   
T Consensus        57 p~~KQ~IpY---vvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q  133 (203)
T COG4112          57 PTTKQVIPY---VVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ  133 (203)
T ss_pred             CCCCCCCCE---EEEECCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHH
T ss_conf             553553447---99951877999972147634433243122325544568872309999700067777887394777754


Q ss_pred             CCCEEEEEEEE-CCCCCCEEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCC
Q ss_conf             44202556652-057886069999999975483--7688233157027788324
Q gi|254780325|r   70 PFSLVPLTFIS-HPYEKFHLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQN  120 (141)
Q Consensus        70 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~  120 (141)
                      ...++++..-. ..-+..|+- .+|..+...+.  ....+--..+|+.+.++.+
T Consensus       134 ~~e~lGlINdd~neVgkVHiG-~lf~~~~k~ndvevKEkd~~~~kwik~~ele~  186 (203)
T COG4112         134 ELEFLGLINDDTNEVGKVHIG-ALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK  186 (203)
T ss_pred             HHEEEEEECCCCCCCCEEEEE-EEEEEECCCCCEEEEECCEEEEEEEEHHHHHH
T ss_conf             300366443788610127888-89985124241024310111123213777888


No 89 
>KOG4313 consensus
Probab=96.96  E-value=0.0018  Score=40.34  Aligned_cols=96  Identities=21%  Similarity=0.159  Sum_probs=64.4

Q ss_pred             EEEEEEECCCC-CCCCCEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEEECC-CCCCEE----EEEEEE
Q ss_conf             69999917898-8898382-25731017874889999888876265202-4420255665205-788606----999999
Q gi|254780325|r   23 KVLLSCRPKDK-SHGEFWE-FPGGKIEDGETPEEALTRELFEELAIVVK-PFSLVPLTFISHP-YEKFHL----LMPFFV   94 (141)
Q Consensus        23 ~iLl~~R~~~~-~~~g~W~-lPGG~ve~gEs~~~a~~REv~EEtgi~~~-~~~~~~~~~~~~~-~~~~~~----~~~~~~   94 (141)
                      +|-+.||++.+ .+||+|+ ..||.+-.|-++.++++.|..||.+|..+ ...+.+.+.+++- +...+.    +-++|.
T Consensus       149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfD  228 (306)
T KOG4313         149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFD  228 (306)
T ss_pred             EEEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEECCEEEEEEEEHHHCCCCCCEEEEE
T ss_conf             89830468844567614552222465667217789999888761784666751310341688866213236866259982


Q ss_pred             EEEE-CCEECCC--HHHEEEECCHHHH
Q ss_conf             9975-4837688--2331570277883
Q gi|254780325|r   95 CHCF-EGIPQSC--EGQQLQWVALDDL  118 (141)
Q Consensus        95 ~~~~-~~~~~~~--E~~~~~Wi~~~el  118 (141)
                      .... +..|+.+  |++.+.-+++++.
T Consensus       229 L~l~~d~iP~~nDGEV~~F~Lltl~~~  255 (306)
T KOG4313         229 LELPLDFIPQNNDGEVQAFELLTLKDC  255 (306)
T ss_pred             CCCCHHHCCCCCCCCEEEEEEECHHHH
T ss_conf             457453047788873345763219999


No 90 
>KOG4432 consensus
Probab=96.63  E-value=0.0052  Score=37.72  Aligned_cols=60  Identities=18%  Similarity=0.164  Sum_probs=40.9

Q ss_pred             EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEE
Q ss_conf             822573101787488999988887626520244202556652057886069999999975
Q gi|254780325|r   39 WEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCF   98 (141)
Q Consensus        39 W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (141)
                      .++-||-++..-|+.+-|.-|+.||+|..+++..++...++........-..++|.|...
T Consensus        81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~  140 (405)
T KOG4432          81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID  140 (405)
T ss_pred             EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEECCCCCCCCHHEEEEECC
T ss_conf             453033124455988876799999718758846704778998415667630301000012


No 91 
>KOG1689 consensus
Probab=96.55  E-value=0.0055  Score=37.60  Aligned_cols=57  Identities=26%  Similarity=0.462  Sum_probs=40.8

Q ss_pred             CCCCCCCEEEEEEEEEEECC--CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             86447864999999999359--86999991789888983822573101787488999988887626
Q gi|254780325|r    2 IDVNLKKILLVVACAVFEPG--GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA   65 (141)
Q Consensus         2 ~~~~mk~~~~vv~~~ii~~~--~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtg   65 (141)
                      +++.|++.+..|  .|+...  -.||+.+-.+     ..+-+|||++++||+-.+.+.|-+-|-+|
T Consensus        64 ~k~gmRrsvegv--livheH~lPHvLLLQig~-----tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg  122 (221)
T KOG1689          64 MKEGMRRSVEGV--LIVHEHNLPHVLLLQIGN-----TFFKLPGGRLRPGEDEADGLKRLLTESLG  122 (221)
T ss_pred             HHHHHHHEEEEE--EEEEECCCCEEEEEEECC-----EEEECCCCCCCCCCCHHHHHHHHHHHHHC
T ss_conf             765422000036--887405887089885078-----77736787557885335779999999865


No 92 
>KOG4548 consensus
Probab=95.51  E-value=0.082  Score=30.84  Aligned_cols=99  Identities=16%  Similarity=0.211  Sum_probs=61.7

Q ss_pred             CCEEEEEEECCCCCCCCCEECCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCC--CEEEEEEEECCCCC-------CEEEE
Q ss_conf             98699999178988898382257310-1787488999988887626520244--20255665205788-------60699
Q gi|254780325|r   21 GGKVLLSCRPKDKSHGEFWEFPGGKI-EDGETPEEALTRELFEELAIVVKPF--SLVPLTFISHPYEK-------FHLLM   90 (141)
Q Consensus        21 ~~~iLl~~R~~~~~~~g~W~lPGG~v-e~gEs~~~a~~REv~EEtgi~~~~~--~~~~~~~~~~~~~~-------~~~~~   90 (141)
                      ..-+||++|.-+  ..+.|.||-+.. +.+++...+|.|++++=.|=+....  .-.++.+..+.++.       .....
T Consensus       138 r~LyLLV~~k~g--~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~  215 (263)
T KOG4548         138 RKLYLLVKRKFG--KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKV  215 (263)
T ss_pred             CEEEEEEEECCC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf             017887763267--655205778654776522888999999987233023310205745656666841234212445315


Q ss_pred             EEEEEEEECCE-ECCCHHHEEEECCHHHHCCC
Q ss_conf             99999975483-76882331570277883248
Q gi|254780325|r   91 PFFVCHCFEGI-PQSCEGQQLQWVALDDLQNY  121 (141)
Q Consensus        91 ~~~~~~~~~~~-~~~~E~~~~~Wi~~~el~~~  121 (141)
                      .+|.|....+. +...-..++.|++.+++.++
T Consensus       216 ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~  247 (263)
T KOG4548         216 FFFKASLVANSNQKNQNKEDFVWVTKDELGEK  247 (263)
T ss_pred             EEEEEEECCCCCHHCCCCCCEEEECHHHHHHH
T ss_conf             77653201564122045341488655887535


No 93 
>KOG4432 consensus
Probab=95.07  E-value=0.087  Score=30.69  Aligned_cols=83  Identities=17%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             CEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCCCCEEEEEEEEEEEECCE---EC-----CCHHH
Q ss_conf             38225731017874889999888876265202442025566520-57886069999999975483---76-----88233
Q gi|254780325|r   38 FWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH-PYEKFHLLMPFFVCHCFEGI---PQ-----SCEGQ  108 (141)
Q Consensus        38 ~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-----~~E~~  108 (141)
                      .-++-.|.|+..-|..+-+.||..||+|.++-...+.....+.. -..... .-..|.|++.+..   |-     ..|.-
T Consensus       285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~-~QTmfy~eVTdA~rsgpGgg~~ee~E~I  363 (405)
T KOG4432         285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGD-TQTMFYVEVTDARRSGPGGGEKEEDEDI  363 (405)
T ss_pred             EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCCCC-EEEEEEEEEEHHHCCCCCCCCCCCCCEE
T ss_conf             645432457887651889999999984788987887656423036677687-0479999940000258997744566523


Q ss_pred             EEEECCHHHHCCC
Q ss_conf             1570277883248
Q gi|254780325|r  109 QLQWVALDDLQNY  121 (141)
Q Consensus       109 ~~~Wi~~~el~~~  121 (141)
                      +.-=+++++++.+
T Consensus       364 Evv~lsle~a~~~  376 (405)
T KOG4432         364 EVVRLSLEDAPSL  376 (405)
T ss_pred             EEEEECHHHHHHH
T ss_conf             6798536452677


No 94 
>TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760    The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions.    Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate.   This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular.
Probab=93.71  E-value=0.072  Score=31.17  Aligned_cols=34  Identities=29%  Similarity=0.515  Sum_probs=27.0

Q ss_pred             EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCC
Q ss_conf             9999935986999991789888983822573101
Q gi|254780325|r   14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIE   47 (141)
Q Consensus        14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve   47 (141)
                      ..++.+.|++|++.+|+.++-++|+|+||-=..+
T Consensus       245 ~l~l~~~d~~~~~~~r~~~~l~gGLy~fP~~~~~  278 (297)
T TIGR01084       245 FLVLLNEDGEVLLEQRPEKGLWGGLYCFPQFELE  278 (297)
T ss_pred             EEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHH
T ss_conf             2234414870576663766410010036525532


No 95 
>TIGR00586 mutt mutator mutT protein; InterPro: IPR003561   MutT is a small bacterial protein (~12-15kDa) involved in the GO system  responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family .    The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair.
Probab=91.24  E-value=0.0065  Score=37.17  Aligned_cols=60  Identities=32%  Similarity=0.276  Sum_probs=48.6

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf             999999359869999917898889838225731017874889999888876265202442
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS   72 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~   72 (141)
                      .+.++-+..|+.....|..+.+.++..+||||+++.||+.+.+..+++.|+.|+.....+
T Consensus        84 ~~~L~~~~~gep~~~~raada~~a~klefpggk~e~g~~~~w~~~~~L~~~~gfppan~~  143 (150)
T TIGR00586        84 YVYLVQEWSGEPFGKERAADAHMANKLEFPGGKIEMGEEGEWVAITDLDEERGFPPANAE  143 (150)
T ss_pred             HHEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHH
T ss_conf             310014333881022455556665431278860221798517898414556788840268


No 96 
>KOG2457 consensus
Probab=89.39  E-value=0.053  Score=31.90  Aligned_cols=100  Identities=16%  Similarity=0.137  Sum_probs=53.4

Q ss_pred             CCEEEEEEECCCCCCCCCEECCCCCC-CCCCCH-HHHHHHH-HHHHHCCCCC-CC-CEEEEEEEECCCCCCEEEEEEEEE
Q ss_conf             98699999178988898382257310-178748-8999988-8876265202-44-202556652057886069999999
Q gi|254780325|r   21 GGKVLLSCRPKDKSHGEFWEFPGGKI-EDGETP-EEALTRE-LFEELAIVVK-PF-SLVPLTFISHPYEKFHLLMPFFVC   95 (141)
Q Consensus        21 ~~~iLl~~R~~~~~~~g~W~lPGG~v-e~gEs~-~~a~~RE-v~EEtgi~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~   95 (141)
                      .+.||+.+|++-+.++|+|.||.=-- +++|-. ..|.+++ +.-+++..-. .. +....+...|.+++...+.++|..
T Consensus       386 ~~~ilv~~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~~~~t~~~~~~~~G~~~htfshi~~ts~V~~~  465 (555)
T KOG2457         386 RNAILVYLRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQLTGGTEDLFKGQAKHTFSHICVTSDVLST  465 (555)
T ss_pred             CCEEEEEECCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             01057785442147877643572110575227789999999999996234001231332165022003355568889887


Q ss_pred             EEECCEECCCHHHEEEECCHHHHCC
Q ss_conf             9754837688233157027788324
Q gi|254780325|r   96 HCFEGIPQSCEGQQLQWVALDDLQN  120 (141)
Q Consensus        96 ~~~~~~~~~~E~~~~~Wi~~~el~~  120 (141)
                      -..+..+...--..++|++-.++..
T Consensus       466 a~~~~~~vt~~p~~~~wi~q~~l~h  490 (555)
T KOG2457         466 AGLTSAVVTVPPFRLQWIKQLSLDH  490 (555)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             5157875026973320234544689


No 97 
>pfam08584 Ribonuc_P_40 Ribonuclease P 40kDa (Rpp40) subunit. The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex.
Probab=47.93  E-value=20  Score=17.08  Aligned_cols=49  Identities=20%  Similarity=0.317  Sum_probs=32.4

Q ss_pred             ECCCEEEEEEECCCCCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf             35986999991789888983822-573101787488999988887626520244202
Q gi|254780325|r   19 EPGGKVLLSCRPKDKSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLV   74 (141)
Q Consensus        19 ~~~~~iLl~~R~~~~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~   74 (141)
                      .++|.+++.-.. ...-.+.+++ |.|++-..      +-||..|++||..++..+-
T Consensus        14 iK~G~~~~LS~~-rid~dnv~al~p~G~L~Ls------LdKeTYe~lGL~Gkps~~~   63 (283)
T pfam08584        14 IKKGNFYALSET-RIDSDNVFALLPNGKLILS------LDKETYERLGLQGKPSRFG   63 (283)
T ss_pred             EECCCEEEEECC-CCCCCCEEEECCCCEEEEE------ECHHHHHHCCCCCCCCCCC
T ss_conf             005848998679-8898876998059858999------6588898738777744567


No 98 
>KOG1202 consensus
Probab=47.34  E-value=22  Score=16.78  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=20.3

Q ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE
Q ss_conf             2257310178748899998888762652024420
Q gi|254780325|r   40 EFPGGKIEDGETPEEALTRELFEELAIVVKPFSL   73 (141)
Q Consensus        40 ~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~   73 (141)
                      .||.|.      .++.++||+.+|.|++.+..-+
T Consensus       271 TfP~G~------~Q~qLi~e~Yse~Gl~P~sv~Y  298 (2376)
T KOG1202         271 TFPSGD------MQEQLIRETYSEAGLNPESVVY  298 (2376)
T ss_pred             CCCCCH------HHHHHHHHHHHHCCCCCCCEEE
T ss_conf             578807------9999999999861989232799


No 99 
>PRK07198 hypothetical protein; Validated
Probab=34.68  E-value=38  Score=15.47  Aligned_cols=46  Identities=28%  Similarity=0.469  Sum_probs=31.2

Q ss_pred             EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             999935986999991789888983822573101787488999988887626
Q gi|254780325|r   15 CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA   65 (141)
Q Consensus        15 ~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtg   65 (141)
                      +-|+..+|.+.+.|-+-+|    -|-|||=.-..| .-+..++|-++|+||
T Consensus       155 G~il~~~g~~~VtK~AveP----VWYLPGvA~Rfg-~~E~~LRr~LFe~Tg  200 (418)
T PRK07198        155 GRVLLANGDVVVTKAAIEP----VWYLPGVAERFG-VSETDLRRTLFEQTG  200 (418)
T ss_pred             CEEECCCCCEEEEEEEECC----CCCCHHHHHHCC-CCHHHHHHHHHHHCC
T ss_conf             8587478868899875233----224622597809-978999999998727


No 100
>PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed
Probab=28.87  E-value=48  Score=14.89  Aligned_cols=62  Identities=18%  Similarity=0.250  Sum_probs=38.9

Q ss_pred             CCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCC------HHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf             864999999999359869999917898889838225731017874------889999888876265202442025
Q gi|254780325|r    7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGET------PEEALTRELFEELAIVVKPFSLVP   75 (141)
Q Consensus         7 k~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs------~~~a~~REv~EEtgi~~~~~~~~~   75 (141)
                      +..-.-.+++|++.++++|-..|..       +.-|+|.+-|-+.      ....+.++..+|.|+.......+.
T Consensus         8 E~Sa~~~gv~ivd~~g~il~n~~~~-------~~p~~GGvvPe~Aar~H~~~i~~vv~~aL~~A~i~~~dIdaIA   75 (536)
T PRK09605          8 EGTAWKTSAGIVDEDGEILANVSDP-------YKPEVGGIHPREAAEHHAEAIPKVIKEALEEAGIKKGDIDLVA   75 (536)
T ss_pred             ECCCCCCEEEEECCCCCEEEEEEEE-------EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE
T ss_conf             8675661799992899885642131-------1599999990899999999999999999998499988898999


No 101
>PRK00047 glpK glycerol kinase; Provisional
Probab=28.60  E-value=48  Score=14.86  Aligned_cols=67  Identities=15%  Similarity=0.242  Sum_probs=38.6

Q ss_pred             CCCCCEEEE-------EEEEEEECCCEEEEEEECCCCC-CCCCEECCCCCCCCC--CCH--HHHHHHHHHHHHCCCCCCC
Q ss_conf             447864999-------9999993598699999178988-898382257310178--748--8999988887626520244
Q gi|254780325|r    4 VNLKKILLV-------VACAVFEPGGKVLLSCRPKDKS-HGEFWEFPGGKIEDG--ETP--EEALTRELFEELAIVVKPF   71 (141)
Q Consensus         4 ~~mk~~~~v-------v~~~ii~~~~~iLl~~R~~~~~-~~g~W~lPGG~ve~g--Es~--~~a~~REv~EEtgi~~~~~   71 (141)
                      |+|++.+..       +-+++++.+|+++-..+...+. .+     -.|.+|.+  +-.  ...+.||+.++.|+...  
T Consensus         1 ~Mm~~yvlgiD~GTts~Ka~l~d~~G~~~a~~~~~~~~~~p-----~~g~~EqDp~~~W~~~~~~i~~~~~~~~i~~~--   73 (498)
T PRK00047          1 MMMKKYILALDQGTTSSRAIIFDHKGNIVSVAQKEFTQIFP-----QPGWVEHDPNEIWASQLSVIAEALAKAGISPD--   73 (498)
T ss_pred             CCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCC-----CCCCEEECHHHHHHHHHHHHHHHHHHCCCCHH--
T ss_conf             98768799997463303566996999999999852562059-----99857788999999999999999997499866--


Q ss_pred             CEEEEE
Q ss_conf             202556
Q gi|254780325|r   72 SLVPLT   77 (141)
Q Consensus        72 ~~~~~~   77 (141)
                      ++.++.
T Consensus        74 ~I~aIg   79 (498)
T PRK00047         74 QIAAIG   79 (498)
T ss_pred             HEEEEE
T ss_conf             779999


No 102
>pfam09520 RE_MjaII MjaII restriction endonuclease. This family includes the MjaII (recognizes GGNCC but the cleavage site is unknown) restriction endonuclease.
Probab=28.13  E-value=20  Score=17.03  Aligned_cols=11  Identities=18%  Similarity=0.220  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99998888762
Q gi|254780325|r   54 EALTRELFEEL   64 (141)
Q Consensus        54 ~a~~REv~EEt   64 (141)
                      .++.|.+.+-.
T Consensus       172 ~~~k~klL~~~  182 (252)
T pfam09520       172 LTVKRKLLRIK  182 (252)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999998


No 103
>pfam07026 DUF1317 Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown.
Probab=27.80  E-value=46  Score=14.95  Aligned_cols=25  Identities=36%  Similarity=0.589  Sum_probs=16.2

Q ss_pred             CCEECCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             83822573101787488999988887626
Q gi|254780325|r   37 EFWEFPGGKIEDGETPEEALTRELFEELA   65 (141)
Q Consensus        37 g~W~lPGG~ve~gEs~~~a~~REv~EEtg   65 (141)
                      .=|-+|||++-.+--..+-+    .||.+
T Consensus        22 ~GWl~Pgg~vi~NPlkAqr~----AEe~N   46 (60)
T pfam07026        22 RGWLFPGGKIIKNPFKAQNA----AEEIN   46 (60)
T ss_pred             CEEECCCCEEECCHHHHHHH----HHHHH
T ss_conf             42153685224495788889----99975


No 104
>pfam11152 DUF2930 Protein of unknown function (DUF2930). This family of proteins has no known function.
Probab=24.77  E-value=57  Score=14.45  Aligned_cols=36  Identities=31%  Similarity=0.317  Sum_probs=21.2

Q ss_pred             EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHH
Q ss_conf             99999935986999991789888983822573101787488999
Q gi|254780325|r   13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEAL   56 (141)
Q Consensus        13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~   56 (141)
                      +..+++..+|++++.+        |.|.-+...+++|+..+.+.
T Consensus        94 a~svlV~~~g~~llrR--------G~~~~~~~~~~pG~i~~r~~  129 (196)
T pfam11152        94 AASVLVYWDGQVLLRR--------GILGPPVSKFEPGEICKRAM  129 (196)
T ss_pred             CCEEEEEECCEEEEEE--------CCCCCCCCCCCHHHHHHHHH
T ss_conf             6089999899999962--------03579877678679999998


No 105
>KOG2479 consensus
Probab=24.28  E-value=48  Score=14.87  Aligned_cols=30  Identities=17%  Similarity=0.457  Sum_probs=14.7

Q ss_pred             EEEEEEEECCEECCCHHHEEEECCHHHHCCCC
Q ss_conf             99999975483768823315702778832488
Q gi|254780325|r   91 PFFVCHCFEGIPQSCEGQQLQWVALDDLQNYS  122 (141)
Q Consensus        91 ~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~  122 (141)
                      .+..|+. +|.++.. ..+..++++..|++++
T Consensus       372 Lv~RcE~-dgvv~g~-~ne~qfltIkAlNEwD  401 (549)
T KOG2479         372 LVARCEL-DGVVQGP-NNEVQFLTIKALNEWD  401 (549)
T ss_pred             EEEEECC-CCEEECC-CCCEEEEEHHHHCCCC
T ss_conf             9998413-6545078-8860588712402236


No 106
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=23.50  E-value=47  Score=14.90  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=19.8

Q ss_pred             CCCCCCCCCCCHHHHHHH--HHHHHHCCCCC
Q ss_conf             257310178748899998--88876265202
Q gi|254780325|r   41 FPGGKIEDGETPEEALTR--ELFEELAIVVK   69 (141)
Q Consensus        41 lPGG~ve~gEs~~~a~~R--Ev~EEtgi~~~   69 (141)
                      .|...|..||+++.|+.|  -..++.|+..+
T Consensus         1 M~~v~V~ene~~d~ALrrFKr~~~k~gil~e   31 (67)
T COG0828           1 MPQVKVRENEPLDKALRRFKRKVEKEGILRE   31 (67)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9802736997399999999999999869999


No 107
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=20.52  E-value=61  Score=14.26  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=18.2

Q ss_pred             CCCCCCCCCCHHHHHHH--HHHHHHCCC
Q ss_conf             57310178748899998--888762652
Q gi|254780325|r   42 PGGKIEDGETPEEALTR--ELFEELAIV   67 (141)
Q Consensus        42 PGG~ve~gEs~~~a~~R--Ev~EEtgi~   67 (141)
                      |+-.|..|||.+.|+.|  -..|.+|+-
T Consensus         2 ~~V~v~e~E~~e~ALrrFKr~~~k~Gi~   29 (66)
T PRK00270          2 PKVKVRENESIDKALRRFKRKVEKAGIL   29 (66)
T ss_pred             CEEEECCCCCHHHHHHHHHHHHHHCCCH
T ss_conf             8215089985999999999999985449


No 108
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods.  Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.  The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins.  The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=20.49  E-value=66  Score=14.07  Aligned_cols=28  Identities=32%  Similarity=0.481  Sum_probs=13.8

Q ss_pred             CEECCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf             3822573101787488999988887626
Q gi|254780325|r   38 FWEFPGGKIEDGETPEEALTRELFEELA   65 (141)
Q Consensus        38 ~W~lPGG~ve~gEs~~~a~~REv~EEtg   65 (141)
                      -|+.||..-...-...-.+.||++++++
T Consensus       111 DWEyP~~~~~~d~~nf~~ll~eLr~~l~  138 (210)
T cd00598         111 DWEYPGAADNSDRENFITLLRELRSALG  138 (210)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHC
T ss_conf             4748999994477899999999999748


Done!