Query gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 141 No_of_seqs 121 out of 6751 Neff 8.1 Searched_HMMs 39220 Date Sun May 29 15:26:44 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780325.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 PRK08999 hypothetical protein; 100.0 3.1E-36 8E-41 229.3 14.2 129 6-136 1-129 (312) 2 PRK10776 nucleoside triphospha 100.0 8.3E-36 2.1E-40 226.8 14.6 128 6-136 1-128 (129) 3 PRK10546 pyrimidine (deoxy)nuc 100.0 2.2E-34 5.5E-39 218.7 14.4 127 8-137 2-128 (135) 4 cd03425 MutT_pyrophosphohydrol 100.0 7.5E-34 1.9E-38 215.6 13.5 124 10-135 1-124 (124) 5 cd03427 MTH1 MutT homolog-1 (M 100.0 3.6E-30 9.2E-35 194.4 14.5 126 13-139 3-129 (137) 6 cd04699 Nudix_Hydrolase_39 Mem 100.0 4.4E-28 1.1E-32 182.3 13.4 121 11-131 2-127 (129) 7 cd04691 Nudix_Hydrolase_32 Mem 100.0 1E-27 2.6E-32 180.3 12.6 112 11-128 1-113 (117) 8 cd04673 Nudix_Hydrolase_15 Mem 99.9 3.2E-27 8.2E-32 177.3 12.6 116 12-128 1-121 (122) 9 cd04696 Nudix_Hydrolase_37 Mem 99.9 3.7E-27 9.5E-32 177.0 12.8 120 10-132 2-125 (125) 10 TIGR00586 mutt mutator mutT pr 99.9 1.1E-27 2.8E-32 180.1 6.9 128 7-136 2-150 (150) 11 cd04690 Nudix_Hydrolase_31 Mem 99.9 3.6E-26 9.2E-31 171.3 13.3 112 12-128 2-117 (118) 12 cd04679 Nudix_Hydrolase_20 Mem 99.9 3.3E-26 8.4E-31 171.5 12.6 118 12-131 4-124 (125) 13 cd04681 Nudix_Hydrolase_22 Mem 99.9 4.2E-26 1.1E-30 170.9 12.3 121 12-133 3-128 (130) 14 cd04683 Nudix_Hydrolase_24 Mem 99.9 1.1E-25 2.7E-30 168.6 13.3 110 12-121 1-114 (120) 15 cd04678 Nudix_Hydrolase_19 Mem 99.9 2E-25 5.1E-30 167.0 12.5 119 12-131 4-128 (129) 16 cd04672 Nudix_Hydrolase_14 Mem 99.9 4.7E-25 1.2E-29 164.9 12.8 116 12-131 3-122 (123) 17 cd04676 Nudix_Hydrolase_17 Mem 99.9 4.4E-25 1.1E-29 165.0 12.0 119 10-132 2-128 (129) 18 cd04511 Nudix_Hydrolase_4 Memb 99.9 4E-25 1E-29 165.3 11.6 108 12-124 14-124 (130) 19 cd04684 Nudix_Hydrolase_25 Con 99.9 1.4E-24 3.7E-29 162.1 13.0 116 14-130 3-126 (128) 20 cd04671 Nudix_Hydrolase_13 Mem 99.9 4.6E-24 1.2E-28 159.1 13.2 114 12-134 2-120 (123) 21 cd04682 Nudix_Hydrolase_23 Mem 99.9 5E-24 1.3E-28 158.9 12.4 110 13-124 3-117 (122) 22 cd04687 Nudix_Hydrolase_28 Mem 99.9 8.5E-24 2.2E-28 157.6 12.7 113 12-126 2-126 (128) 23 cd04677 Nudix_Hydrolase_18 Mem 99.9 8.2E-24 2.1E-28 157.7 12.2 121 7-132 3-132 (132) 24 cd04700 DR1025_like DR1025 fro 99.9 9.7E-24 2.5E-28 157.3 12.3 110 11-122 14-126 (142) 25 cd03430 GDPMH GDP-mannose glyc 99.9 3.9E-23 1E-27 153.8 13.6 112 12-124 14-135 (144) 26 cd04695 Nudix_Hydrolase_36 Mem 99.9 7.4E-23 1.9E-27 152.2 13.7 125 12-138 4-131 (131) 27 cd04670 Nudix_Hydrolase_12 Mem 99.9 7.4E-23 1.9E-27 152.2 13.1 115 12-130 4-122 (127) 28 cd03675 Nudix_Hydrolase_2 Cont 99.9 1.1E-22 2.7E-27 151.3 13.5 108 13-122 2-112 (134) 29 cd04667 Nudix_Hydrolase_10 Mem 99.9 4.3E-23 1.1E-27 153.5 11.5 107 14-131 3-111 (112) 30 cd04688 Nudix_Hydrolase_29 Mem 99.9 1.2E-22 3.2E-27 150.9 13.4 110 13-126 3-123 (126) 31 cd04664 Nudix_Hydrolase_7 Memb 99.9 1.2E-22 3.1E-27 151.0 12.6 120 9-131 3-128 (129) 32 cd02883 Nudix_Hydrolase Nudix 99.9 1.9E-22 4.9E-27 149.8 13.3 118 12-131 2-122 (123) 33 cd04680 Nudix_Hydrolase_21 Mem 99.9 1.5E-22 3.7E-27 150.5 12.7 114 13-132 3-118 (120) 34 cd03673 Ap6A_hydrolase Diadeno 99.9 2.1E-22 5.2E-27 149.6 12.8 120 12-135 3-130 (131) 35 cd03674 Nudix_Hydrolase_1 Memb 99.9 2.7E-22 6.8E-27 149.0 12.4 119 12-134 4-136 (138) 36 PRK09438 ntpA dATP pyrophospho 99.9 1.9E-22 4.9E-27 149.8 11.1 133 2-138 1-147 (148) 37 cd04669 Nudix_Hydrolase_11 Mem 99.9 4.5E-22 1.2E-26 147.6 12.9 107 13-127 3-120 (121) 38 pfam00293 NUDIX NUDIX domain. 99.9 2.1E-21 5.3E-26 143.8 13.2 124 12-135 4-131 (133) 39 cd04694 Nudix_Hydrolase_35 Mem 99.9 7.2E-21 1.8E-25 140.7 11.5 109 13-121 4-131 (143) 40 COG1051 ADP-ribose pyrophospha 99.8 3.3E-20 8.5E-25 136.9 13.7 133 2-136 2-138 (145) 41 cd04689 Nudix_Hydrolase_30 Mem 99.8 1.6E-20 4.1E-25 138.7 11.7 106 12-121 2-114 (125) 42 cd03428 Ap4A_hydrolase_human_l 99.8 2.7E-20 7E-25 137.4 12.3 118 12-134 4-128 (130) 43 PRK05379 bifunctional nicotina 99.8 4.2E-20 1.1E-24 136.3 11.3 129 8-137 199-339 (340) 44 cd04693 Nudix_Hydrolase_34 Mem 99.8 4.3E-20 1.1E-24 136.2 11.0 108 12-121 2-113 (127) 45 cd03429 NADH_pyrophosphatase N 99.8 1.4E-20 3.6E-25 139.0 8.1 121 12-138 2-128 (131) 46 cd04697 Nudix_Hydrolase_38 Mem 99.8 1.2E-19 3E-24 133.7 12.0 113 12-127 2-122 (126) 47 cd03671 Ap4A_hydrolase_plant_l 99.8 7E-19 1.8E-23 129.2 10.6 122 12-137 5-146 (147) 48 cd04674 Nudix_Hydrolase_16 Mem 99.8 1.2E-18 3.1E-23 127.8 9.9 107 13-124 6-116 (118) 49 PRK00714 dinucleoside polyphos 99.8 2E-18 5.1E-23 126.6 10.4 128 6-138 4-151 (156) 50 cd04686 Nudix_Hydrolase_27 Mem 99.8 7.2E-18 1.8E-22 123.4 11.4 105 13-121 2-119 (131) 51 cd04692 Nudix_Hydrolase_33 Mem 99.8 6.8E-18 1.7E-22 123.6 10.5 111 11-121 3-127 (144) 52 cd04685 Nudix_Hydrolase_26 Mem 99.8 2.2E-17 5.6E-22 120.6 12.5 115 12-126 2-130 (133) 53 cd02885 IPP_Isomerase Isopente 99.7 4.7E-17 1.2E-21 118.7 12.4 111 9-121 29-148 (165) 54 COG2816 NPY1 NTP pyrophosphohy 99.7 4.2E-17 1.1E-21 119.0 6.9 104 13-122 146-252 (279) 55 PRK03759 isopentenyl-diphospha 99.7 7.7E-16 2E-20 111.7 13.1 112 9-121 33-152 (184) 56 cd03672 Dcp2p mRNA decapping e 99.7 1.5E-16 3.9E-21 115.7 9.2 104 11-121 2-111 (145) 57 PRK00241 nudC NADH pyrophospha 99.7 1E-16 2.6E-21 116.8 7.8 104 13-122 135-240 (257) 58 cd03426 CoAse Coenzyme A pyrop 99.7 6.8E-16 1.7E-20 112.0 10.0 106 13-120 5-117 (157) 59 cd04665 Nudix_Hydrolase_8 Memb 99.6 1.8E-15 4.7E-20 109.5 11.0 94 14-114 3-98 (118) 60 cd03424 ADPRase_NUDT5 ADP-ribo 99.6 2.8E-15 7.1E-20 108.5 10.2 107 13-121 5-115 (137) 61 PRK10707 hypothetical protein; 99.6 1.2E-14 3.1E-19 104.8 11.4 101 19-121 41-146 (190) 62 PRK11762 nudE ADP-ribose dipho 99.6 1.3E-14 3.2E-19 104.7 10.4 104 16-121 53-159 (185) 63 cd03431 DNA_Glycosylase_C DNA 99.6 3.2E-14 8.2E-19 102.4 10.6 114 13-134 5-118 (118) 64 TIGR02705 nudix_YtkD nucleosid 99.5 3E-14 7.7E-19 102.5 7.5 86 6-100 22-108 (158) 65 KOG3084 consensus 99.5 4.2E-15 1.1E-19 107.5 1.2 106 10-119 187-296 (345) 66 COG0494 MutT NTP pyrophosphohy 99.4 3.3E-12 8.3E-17 90.8 13.2 110 13-125 14-138 (161) 67 PRK10729 nudF ADP-ribose pyrop 99.4 1.6E-12 4.1E-17 92.6 10.5 107 13-121 52-171 (202) 68 cd04666 Nudix_Hydrolase_9 Memb 99.4 3.2E-12 8.1E-17 90.9 11.6 104 13-120 3-114 (122) 69 cd03676 Nudix_hydrolase_3 Memb 99.2 3.1E-10 8E-15 79.4 12.9 116 23-138 49-180 (180) 70 KOG2839 consensus 99.2 2.4E-11 6E-16 85.8 6.6 108 10-120 9-124 (145) 71 cd04662 Nudix_Hydrolase_5 Memb 99.2 8E-11 2E-15 82.8 8.6 78 13-95 3-87 (126) 72 cd04663 Nudix_Hydrolase_6 Memb 99.2 3.4E-11 8.6E-16 85.0 6.6 100 15-120 4-115 (126) 73 PRK10880 adenine DNA glycosyla 99.2 1.5E-10 3.9E-15 81.2 9.3 119 9-137 229-347 (350) 74 KOG0648 consensus 99.1 1.4E-10 3.6E-15 81.4 4.9 111 13-123 118-233 (295) 75 COG1443 Idi Isopentenyldiphosp 99.0 1.4E-09 3.5E-14 75.7 8.9 113 10-122 33-154 (185) 76 KOG3069 consensus 99.0 1.1E-09 2.8E-14 76.2 8.4 99 22-120 58-162 (246) 77 PRK13910 DNA glycosylase MutY; 98.9 3E-09 7.5E-14 73.8 6.2 97 15-139 191-287 (290) 78 KOG3041 consensus 98.9 1.6E-08 4.1E-13 69.5 9.3 107 13-119 77-192 (225) 79 cd03670 ADPRase_NUDT9 ADP-ribo 98.5 4.7E-07 1.2E-11 61.1 8.0 108 23-136 50-184 (186) 80 cd04661 MRP_L46 Mitochondrial 98.5 9.4E-07 2.4E-11 59.3 8.5 98 22-121 13-120 (132) 81 COG4119 Predicted NTP pyrophos 98.5 8.9E-07 2.3E-11 59.5 8.3 122 13-138 6-151 (161) 82 KOG0142 consensus 98.2 1.3E-06 3.3E-11 58.5 4.4 130 10-139 52-203 (225) 83 KOG4195 consensus 98.1 1.4E-05 3.7E-10 52.5 7.4 109 23-137 140-270 (275) 84 COG1194 MutY A/G-specific DNA 98.1 5E-06 1.3E-10 55.1 4.6 107 10-135 235-341 (342) 85 TIGR02150 IPP_isom_1 isopenten 98.0 9.5E-05 2.4E-09 47.8 9.9 114 9-122 29-172 (190) 86 TIGR00052 TIGR00052 conserved 97.7 3.4E-05 8.6E-10 50.4 4.1 64 38-101 88-152 (199) 87 KOG2937 consensus 97.7 9E-06 2.3E-10 53.7 0.2 107 7-118 79-189 (348) 88 COG4112 Predicted phosphoester 97.6 0.00077 2E-08 42.5 9.1 113 4-120 57-186 (203) 89 KOG4313 consensus 97.0 0.0018 4.7E-08 40.3 5.4 96 23-118 149-255 (306) 90 KOG4432 consensus 96.6 0.0052 1.3E-07 37.7 5.6 60 39-98 81-140 (405) 91 KOG1689 consensus 96.6 0.0055 1.4E-07 37.6 5.3 57 2-65 64-122 (221) 92 KOG4548 consensus 95.5 0.082 2.1E-06 30.8 7.3 99 21-121 138-247 (263) 93 KOG4432 consensus 95.1 0.087 2.2E-06 30.7 6.3 83 38-121 285-376 (405) 94 TIGR01084 mutY A/G-specific ad 93.7 0.072 1.8E-06 31.2 3.4 34 14-47 245-278 (297) 95 TIGR00586 mutt mutator mutT pr 91.2 0.0065 1.7E-07 37.2 -4.6 60 13-72 84-143 (150) 96 KOG2457 consensus 89.4 0.053 1.4E-06 31.9 -1.2 100 21-120 386-490 (555) 97 pfam08584 Ribonuc_P_40 Ribonuc 47.9 20 0.00051 17.1 3.0 49 19-74 14-63 (283) 98 KOG1202 consensus 47.3 22 0.00057 16.8 3.2 28 40-73 271-298 (2376) 99 PRK07198 hypothetical protein; 34.7 38 0.00096 15.5 3.5 46 15-65 155-200 (418) 100 PRK09605 O-sialoglycoprotein e 28.9 48 0.0012 14.9 4.1 62 7-75 8-75 (536) 101 PRK00047 glpK glycerol kinase; 28.6 48 0.0012 14.9 6.4 67 4-77 1-79 (498) 102 pfam09520 RE_MjaII MjaII restr 28.1 20 0.00052 17.0 0.4 11 54-64 172-182 (252) 103 pfam07026 DUF1317 Protein of u 27.8 46 0.0012 15.0 2.2 25 37-65 22-46 (60) 104 pfam11152 DUF2930 Protein of u 24.8 57 0.0014 14.5 2.8 36 13-56 94-129 (196) 105 KOG2479 consensus 24.3 48 0.0012 14.9 1.8 30 91-122 372-401 (549) 106 COG0828 RpsU Ribosomal protein 23.5 47 0.0012 14.9 1.6 29 41-69 1-31 (67) 107 PRK00270 rpsU 30S ribosomal pr 20.5 61 0.0016 14.3 1.7 26 42-67 2-29 (66) 108 cd00598 GH18_chitinase-like Th 20.5 66 0.0017 14.1 1.9 28 38-65 111-138 (210) No 1 >PRK08999 hypothetical protein; Provisional Probab=100.00 E-value=3.1e-36 Score=229.29 Aligned_cols=129 Identities=40% Similarity=0.675 Sum_probs=119.7 Q ss_pred CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 78649999999993598699999178988898382257310178748899998888762652024420255665205788 Q gi|254780325|r 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) |-|.+.||+++|++.+|+||+++|+.+.+++|+|+|||||+|+|||+++|++||++||+||+++... ++..+.|.|++ T Consensus 1 ~~k~i~V~~gvi~~~~~~vLi~~R~~~~~~~g~WEFPGGKvE~~Et~~~aL~REl~EElgI~v~~~~--~~~~~~h~Y~~ 78 (312) T PRK08999 1 SMKRVHVAAAVIRDADGRILLARRPEGKHQGGLWEFPGGKVEPGETVEQALARELREELGIEVTAAR--PLITVPHDYPD 78 (312) T ss_pred CCCEEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE--EEEEEEEECCC T ss_conf 9847999999998589969999789999878846489886799989999999998887092763213--88999996498 Q ss_pred CEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 606999999997548376882331570277883248897369899999987 Q gi|254780325|r 86 FHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRK 136 (141) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~ 136 (141) +.+.+++|.|+.++|+|.+.|+++++|++++++.+++|+|+|++++++|+- T Consensus 79 ~~v~L~~~~v~~~~G~~~~~EgQ~~~Wv~~~~l~~~~fp~AN~~Ii~~l~L 129 (312) T PRK08999 79 KRVRLDVREVTAWQGEPHGREGQPLAWVAPDELAVYPFPPANQPIVRALRL 129 (312) T ss_pred EEEEEEEEEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCCCHHHHHHHCC T ss_conf 499999999873077004656875667765335458999998699985035 No 2 >PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional Probab=100.00 E-value=8.3e-36 Score=226.85 Aligned_cols=128 Identities=32% Similarity=0.526 Sum_probs=117.1 Q ss_pred CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 78649999999993598699999178988898382257310178748899998888762652024420255665205788 Q gi|254780325|r 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) || .+.||+++|.+.+|++|++||+.++.++|+|+||||++|+|||+++|++||++||+|++++.... +.++.|.|++ T Consensus 1 mk-~i~V~~aii~~~~~~~Li~~R~~~~~~~g~WEFPGGKvE~gEt~~~Al~REl~EElgi~v~~~~~--~~~~~~~y~~ 77 (129) T PRK10776 1 MK-KLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEAGETPEQALIRELQEEVGITPQQATL--FEKLEYEFPD 77 (129) T ss_pred CC-EEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHCEEEEECCE--EEEEEEECCC T ss_conf 97-68999999994899899999699998898591992852799798999999987751716760529--9999998998 Q ss_pred CEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 606999999997548376882331570277883248897369899999987 Q gi|254780325|r 86 FHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRK 136 (141) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~ 136 (141) .++.+++|.|+.++|+|...|+++++|++++++.+++|+|+|+++++.|++ T Consensus 78 ~~i~l~~f~~~~~~G~~~~~e~~~~~Wv~~~eL~~~~~~~ad~~ii~~L~~ 128 (129) T PRK10776 78 RHITLWFWLVESWEGEPWGKEGQPGRWVSQVALNADDFPPANEPIIAKLKR 128 (129) T ss_pred EEEEEEEEEEEECCCEECCCCCCCCEEEEHHHCCCCCCCCCCHHHHHHHHC T ss_conf 099999999997169997565767599778883659978684999999860 No 3 >PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional Probab=100.00 E-value=2.2e-34 Score=218.70 Aligned_cols=127 Identities=33% Similarity=0.517 Sum_probs=114.0 Q ss_pred CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCE Q ss_conf 64999999999359869999917898889838225731017874889999888876265202442025566520578860 Q gi|254780325|r 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH 87 (141) Q Consensus 8 ~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~ 87 (141) |++.||+ +|+.++|+||++||+.++.++|+|+|||||+|+|||+++|++||++|||||++.+.+.+ .+..|.+++.. T Consensus 2 k~i~Vva-aii~~~~rvLi~~R~~~~~~~g~WEFPGGKvE~gEs~~~Al~REl~EElgi~v~~~~~l--~~~~~~~~~~~ 78 (135) T PRK10546 2 KMIDVVA-AIIERDGKILLAQRPAHSDQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVGEYI--ASHQREVSGRI 78 (135) T ss_pred CEEEEEE-EEEEECCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEE--EEEEEECCCEE T ss_conf 8789999-99995999999988999999985929832168987989999888787509589845689--99988779989 Q ss_pred EEEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 69999999975483768823315702778832488973698999999872 Q gi|254780325|r 88 LLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH 137 (141) Q Consensus 88 ~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~ 137 (141) +.+++|.|+..+|++...|+++++|++++++.+++|+|+|.++|+.|... T Consensus 79 i~l~~~~~~~~~g~~~~~e~~~~~Wv~~~el~~~~~~pAd~~il~~l~a~ 128 (135) T PRK10546 79 IHLHAWHVPDFHGTLQAHEHQALVWCTPEEALRYPLAPADIPLLEAFMAL 128 (135) T ss_pred EEEEEEEEEEECCEEEECCCCCCEEEEHHHHCCCCCCCCCHHHHHHHHHH T ss_conf 99999999988881821456756992389935499885859999999997 No 4 >cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides. Probab=100.00 E-value=7.5e-34 Score=215.57 Aligned_cols=124 Identities=40% Similarity=0.728 Sum_probs=114.4 Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 99999999935986999991789888983822573101787488999988887626520244202556652057886069 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) +.||+++|++++|++||+||+.++.++|+|+||||++|.|||+++|++||++||||+++++.+.+ ..+.|.+++.++. T Consensus 1 ~~Vv~avI~~~~g~vLl~~R~~~~~~~g~W~~PGG~ve~gE~~~~a~~RE~~EEtGl~v~~~~~~--~~~~~~~~~~~~~ 78 (124) T cd03425 1 IEVVAAIIIDDDGRILIAQRPAGKHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEVGELL--ATVEHDYPDKRVT 78 (124) T ss_pred CEEEEEEEEECCCEEEEEECCCCCCCCCEEECCEEEECCCCCHHHHHHHHHHHHHCCEEEECCEE--EEEEEECCCEEEE T ss_conf 96999999979998999986899999994979876796999999999999999869704674699--9998988991899 Q ss_pred EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH Q ss_conf 9999999754837688233157027788324889736989999998 Q gi|254780325|r 90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLR 135 (141) Q Consensus 90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~ 135 (141) +++|.|+..+++++..|+++++|++++++.+++|+|+|+++++.|+ T Consensus 79 l~~f~~~~~~g~~~~~E~~~~~Wv~~~el~~l~~~~a~~~il~~L~ 124 (124) T cd03425 79 LHVFLVELWSGEPQLLEHQELRWVPPEELDDLDFPPADVPIVAALQ 124 (124) T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEHHHCCCCCCCCCHHHHHHHHC T ss_conf 9999989707808336453659802999364999826189999749 No 5 >cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m Probab=99.97 E-value=3.6e-30 Score=194.35 Aligned_cols=126 Identities=33% Similarity=0.491 Sum_probs=111.0 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) +..+++.++|+|||++|++++. .|+|+||||++|+|||+++||+||++|||||+++..++++...+.+++.+.++.+++ T Consensus 3 ~tl~ii~~~~kiLl~~R~~~~~-~G~W~~PGGkvE~gEt~~~a~~REl~EEtGl~v~~~~~~g~~~~~~~~~~~~~~~~~ 81 (137) T cd03427 3 TTLCFIKDPDKVLLLNRKKGPG-WGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLKLVGIIKFPFPGEEERYGVFV 81 (137) T ss_pred EEEEEEEECCEEEEEEECCCCC-CCEEECCEEECCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEEEECCCCEEEEEEE T ss_conf 8999999899999999699999-995979556567997999999999989869288713899999999279998999999 Q ss_pred EEEEEECCEECC-CHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 999975483768-82331570277883248897369899999987215 Q gi|254780325|r 93 FVCHCFEGIPQS-CEGQQLQWVALDDLQNYSMLPADLSLISFLRKHAL 139 (141) Q Consensus 93 ~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~~ 139 (141) |.|+.++|++.. +++.+++|++++++.+++++|+|+++++.+.+... T Consensus 82 f~~~~~~G~~~~~~~e~~l~Wv~~~el~~l~~~p~d~~~l~~ll~~~~ 129 (137) T cd03427 82 FLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWLPLMLEKNL 129 (137) T ss_pred EEEEEEEEEECCCCCCCEEEEEEHHHCCCCCCCCCHHHHHHHHHCCCC T ss_conf 999835247679883336899849897758998236899999977993 No 6 >cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.96 E-value=4.4e-28 Score=182.33 Aligned_cols=121 Identities=32% Similarity=0.602 Sum_probs=101.7 Q ss_pred EEEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 9999999935986999991789-888983822573101787488999988887626520244202556652057886069 Q gi|254780325|r 11 LVVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 11 ~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) ..|+++|++++|++||+||+.+ ..++|+|+||||++|+|||+++||+||++||||++++.........+...++..++. T Consensus 2 v~V~~~I~~~~g~vLl~kR~~~~~~~~G~W~~PGG~ie~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 81 (129) T cd04699 2 VAVAALIVKDVGRILILKRSKDERTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLRYPSTVTHEDSGVYNVI 81 (129) T ss_pred EEEEEEEEECCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCEEEE T ss_conf 89999999899989999808999999981889805065998999999999999879577876887699997279950899 Q ss_pred EEEEEEEEECCEECC-CHHHEEEECCHHHHCCCCC---CCCCHHHH Q ss_conf 999999975483768-8233157027788324889---73698999 Q gi|254780325|r 90 MPFFVCHCFEGIPQS-CEGQQLQWVALDDLQNYSM---LPADLSLI 131 (141) Q Consensus 90 ~~~~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~---~~~~~~ii 131 (141) .++|.|+..++.+.. .|+++++|+++++|++++. +++++..+ T Consensus 82 ~~~f~~~~~~~~~~~~~E~~e~~Wv~~eeL~~L~~d~~~~~~~~~~ 127 (129) T cd04699 82 YLVFVCEALSGAVKLSDEHEEYAWVTLEELAILKADILFEPSKIFL 127 (129) T ss_pred EEEEEEEECCCCCCCCCCCEEEEEEEHHHHHHCCCCCCCCCHHHHH T ss_conf 9999986248868788652066998489975487975655206652 No 7 >cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.95 E-value=1e-27 Score=180.26 Aligned_cols=112 Identities=29% Similarity=0.452 Sum_probs=91.3 Q ss_pred EEEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 9999999935986999991789-888983822573101787488999988887626520244202556652057886069 Q gi|254780325|r 11 LVVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 11 ~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) +||+++| .++|++|++||+.+ ...+|+|+|||||+|+|||+++|++||++||+||++...+++ .+..+.+.+.. . T Consensus 1 hVVagii-~~~~kvLl~rR~~~~~~~~G~WefPGGkvE~gEt~~~Al~REl~EElgI~v~~~~~~--~~~~~~~~~~~-~ 76 (117) T cd04691 1 HGVVGVL-FSDDKVLLERRSLTKNADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSYTYL--CSLYHPTSELQ-L 76 (117) T ss_pred CEEEEEE-EECCEEEEEECCCCCCCCCCEEECCEECCCCCCCHHHHHHHHHHHHHCEEEECCEEE--EEEEECCCCEE-E T ss_conf 9799999-989999999889999999996989745177988999999999889819156224589--99985599969-9 Q ss_pred EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCH Q ss_conf 999999975483768823315702778832488973698 Q gi|254780325|r 90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADL 128 (141) Q Consensus 90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~ 128 (141) +++|.|+.++|+|++.|+++++|++++|+... ..+|+ T Consensus 77 l~~~~~~~~~G~~~~~E~~e~~Wv~~~el~~~--~~ad~ 113 (117) T cd04691 77 LHYYVVTFWQGEIPAQEAAEVHWMTANDIVLA--SEADR 113 (117) T ss_pred EEEEEEEEECCEECCCCCCCCEECCHHHCCCC--CCCCC T ss_conf 99999999817664334770577169995386--44551 No 8 >cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.95 E-value=3.2e-27 Score=177.34 Aligned_cols=116 Identities=34% Similarity=0.558 Sum_probs=95.6 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC----CCE Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520578----860 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE----KFH 87 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~----~~~ 87 (141) |+|++|+.++|||||+||++.+ .+|+|+||||++|+|||+.+||+||++||||+.+....++......+... .++ T Consensus 1 v~v~~ii~~~~kvLL~~R~~~~-~~g~W~lPGG~ve~gEs~~~a~~REv~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 79 (122) T cd04673 1 VAVGAVVFRGGRVLLVRRANPP-DAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVGRLLTVVDVIERDAAGRVEFH 79 (122) T ss_pred CEEEEEEEECCEEEEEEECCCC-CCCEEECCEEEEECCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCCEEEE T ss_conf 9899999989999999969999-999799989685789999999999999988976476069999910202899965899 Q ss_pred EEEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCH Q ss_conf 699999999754837688-23315702778832488973698 Q gi|254780325|r 88 LLMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADL 128 (141) Q Consensus 88 ~~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~ 128 (141) +.+.+|.|+..++++..+ |+.+++|++++++++++++|+|| T Consensus 80 ~~~~~f~~~~~~g~~~~~~E~~e~~W~~~del~~l~l~~~~R 121 (122) T cd04673 80 YVLIDFLCRYLGGEPVAGDDALDARWVPLDELAALSLTESTR 121 (122) T ss_pred EEEEEEEEEECCCEEECCCCEEEEEEEEHHHCCCCCCCCCCC T ss_conf 999999999739988419883888998699914798993436 No 9 >cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.95 E-value=3.7e-27 Score=176.97 Aligned_cols=120 Identities=26% Similarity=0.413 Sum_probs=98.2 Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC---CCCC Q ss_conf 9999999993598699999178988898382257310178748899998888762652024420255665205---7886 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHP---YEKF 86 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~---~~~~ 86 (141) +..|+++|++++|++||+||++ ..|+|+||||++|+|||+++||+||++|||||+++..++.......+. +... T Consensus 2 ~v~V~avI~~~~g~vLl~r~~~---~~g~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 78 (125) T cd04696 2 LVTVGALIYAPDGRILLVRTTK---WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIKFAMVQEAIFSEEFHKPA 78 (125) T ss_pred CCEEEEEEEECCCEEEEEEECC---CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCCCCCC T ss_conf 0179999994999899999369---9995989865886995999999999999759576535899888221267677776 Q ss_pred EEEEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCHHHHH Q ss_conf 0699999999754837688-233157027788324889736989999 Q gi|254780325|r 87 HLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADLSLIS 132 (141) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~~ii~ 132 (141) ++....|.|+..++.+..+ |+++++|++++++.++++.+.++.+|+ T Consensus 79 h~~~~~~~~~~~~~~~~~~~E~~e~~Wv~~~el~~~~l~~~~r~~ie 125 (125) T cd04696 79 HFVLFDFFARTDGTEVTPNEEIVEWEWVTPEEALDYPLNSFTRLLLE 125 (125) T ss_pred EEEEEEEEEEEECCCCCCCCCCCEEEEECHHHHHCCCCCHHHHHHHC T ss_conf 59999999998089277783542999943889565988868876519 No 10 >TIGR00586 mutt mutator mutT protein; InterPro: IPR003561 MutT is a small bacterial protein (~12-15kDa) involved in the GO system responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family . The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair. Probab=99.94 E-value=1.1e-27 Score=180.06 Aligned_cols=128 Identities=34% Similarity=0.549 Sum_probs=113.8 Q ss_pred CCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC Q ss_conf 86499999999935986999991789888983822573101787488999988887626520244202556652057886 Q gi|254780325|r 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF 86 (141) Q Consensus 7 k~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~ 86 (141) +|.+-++|++|.|++|+|+|.||..+.++++.|+|||||+|.|||+++|++||++||.||.+....+. ....|.|+.. T Consensus 2 ~K~~QiavgiIrNe~gei~itrR~~g~~~a~~lEFPGGK~e~GETpeqa~vREl~EEigI~~~~~~l~--e~l~~eyP~~ 79 (150) T TIGR00586 2 MKKLQIAVGIIRNENGEIFITRRAAGAHFANKLEFPGGKIEMGETPEQAVVRELQEEIGITPQHFELF--EKLEYEYPQK 79 (150) T ss_pred CCEEEEEEEEEECCCCCEEEEECCCCCCHHCCCCCCCCCCCCCCCHHHHHHHHHHHHEEEEEECCHHE--EEECCCCCCE T ss_conf 86067888899818880788744456210002479898138898978977654222001232000000--0101306740 Q ss_pred EEEEEEEEEEEECCEECCCH--------------------HHEEEECCHHHHCCCC-CCCCCHHHHHHHHH Q ss_conf 06999999997548376882--------------------3315702778832488-97369899999987 Q gi|254780325|r 87 HLLMPFFVCHCFEGIPQSCE--------------------GQQLQWVALDDLQNYS-MLPADLSLISFLRK 136 (141) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~E--------------------~~~~~Wi~~~el~~~~-~~~~~~~ii~~l~~ 136 (141) ++.+++|+|..++|+|...+ +++.+|+...+|.... |+|+|.++++.|++ T Consensus 80 ~l~l~~~L~~~~~gep~~~~raada~~a~klefpggk~e~g~~~~w~~~~~L~~~~gfppan~~~i~~L~~ 150 (150) T TIGR00586 80 RLTLYVYLVQEWSGEPFGKERAADAHMANKLEFPGGKIEMGEEGEWVAITDLDEERGFPPANAELIQKLRQ 150 (150) T ss_pred EEHHHHEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHHHHHHHCC T ss_conf 00023100143338810224555566654312788602217985178984145567888402689999619 No 11 >cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.94 E-value=3.6e-26 Score=171.27 Aligned_cols=112 Identities=32% Similarity=0.487 Sum_probs=92.7 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE---CCCCCCEE Q ss_conf 999999935986999991789888983822573101787488999988887626520244202556652---05788606 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS---HPYEKFHL 88 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~---~~~~~~~~ 88 (141) |++++|++++|+|||+||.. .+.|.||||++|+|||+++|+.||++||||+++++..+..+..+. +.++...+ T Consensus 2 v~~a~v~~~~grvLl~rr~~----~~~W~lPGG~vE~gEt~~~a~~REl~EE~Gl~v~~~~l~~~~~~~~~~~~~~~~~~ 77 (118) T cd04690 2 IAAALILVRDGRVLLVRKRG----TDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSLEYLGTFRAPAANEPGVDV 77 (118) T ss_pred EEEEEEEECCCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEECCEEEEEEEEEECCCCCCCEEE T ss_conf 89999998999899999779----99498996376599799999999998975949860207998999721667999899 Q ss_pred EEEEEEEEEECCEECC-CHHHEEEECCHHHHCCCCCCCCCH Q ss_conf 9999999975483768-823315702778832488973698 Q gi|254780325|r 89 LMPFFVCHCFEGIPQS-CEGQQLQWVALDDLQNYSMLPADL 128 (141) Q Consensus 89 ~~~~~~~~~~~~~~~~-~E~~~~~Wi~~~el~~~~~~~~~~ 128 (141) .+++|.|. .++.+.. .|+++++|++++++.+++++|..+ T Consensus 78 ~~~~~~~~-~~g~~~~~~E~~e~~Wv~~~el~~~~laP~~r 117 (118) T cd04690 78 RATVYVAE-LTGEPVPAAEIEEIRWVDYDDPADDRLAPLLR 117 (118) T ss_pred EEEEEEEE-EECCCCCCCCCCCEEEECHHHCCCCCCCCCCC T ss_conf 99999999-81884578631002995798976899898667 No 12 >cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.94 E-value=3.3e-26 Score=171.52 Aligned_cols=118 Identities=26% Similarity=0.412 Sum_probs=100.0 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) .|+++|++++|++||+||++.+ .+|+|.||||++|.|||+++||+||++|||||.++...++++..........+++.. T Consensus 4 ~v~avv~~~~g~vLL~~R~~~~-~~g~W~lPGG~vE~gEt~~~aa~REv~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~ 82 (125) T cd04679 4 GCGAAILRDDGKLLLVKRLRAP-EAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHSTRLLCVVDHIIEEPPQHWVAP 82 (125) T ss_pred EEEEEEEECCCEEEEEEECCCC-CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEE T ss_conf 6999999779989999938999-999793988305899899999999999987978585379999856435899659999 Q ss_pred EEEEEEECCEECC---CHHHEEEECCHHHHCCCCCCCCCHHHH Q ss_conf 9999975483768---823315702778832488973698999 Q gi|254780325|r 92 FFVCHCFEGIPQS---CEGQQLQWVALDDLQNYSMLPADLSLI 131 (141) Q Consensus 92 ~~~~~~~~~~~~~---~E~~~~~Wi~~~el~~~~~~~~~~~ii 131 (141) +|.|+..+|++.. .|+.+++|+++++|++ ++.+.++.+| T Consensus 83 ~f~~~~~~g~~~~~~~~e~~e~~Wf~~d~LP~-~l~~~~r~~i 124 (125) T cd04679 83 VYLAENFSGEPRLMEPDKLLELGWFALDALPQ-PLTRATRDAV 124 (125) T ss_pred EEEEEECCCEEECCCCCEEEEEEEECHHHCCC-CCCHHHHHHH T ss_conf 99999738878228998146887898889888-6598899974 No 13 >cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.94 E-value=4.2e-26 Score=170.87 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=92.3 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC--EEE Q ss_conf 999999935986999991789888983822573101787488999988887626520244202556652057886--069 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF--HLL 89 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~--~~~ 89 (141) +|+++|++++|+|||+||++++ .+|+|+||||++|+|||+++||+||++||||+.+...++.......+++.+. ++. T Consensus 3 aV~~vI~~~~g~vLl~kR~~~~-~~g~W~lPGG~ve~gEt~~~aa~REl~EEtGl~v~~~~~~~~~~~~~~~~~~~~~~~ 81 (130) T cd04681 3 AVGVLILNEDGELLVVRRAREP-GKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELSYLFSLPNTYPYGGMEYDTL 81 (130) T ss_pred EEEEEEEECCCEEEEEEECCCC-CCCCEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCEEEEEE T ss_conf 7999999689999999968998-899092988206599999999989999986954688689999764554698238999 Q ss_pred EEEEEEEEECCE--ECCCHHHEEEECCHHHHCCCCC-CCCCHHHHHH Q ss_conf 999999975483--7688233157027788324889-7369899999 Q gi|254780325|r 90 MPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNYSM-LPADLSLISF 133 (141) Q Consensus 90 ~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~~~-~~~~~~ii~~ 133 (141) .++|.|+..++. +...|+.+++|++++|++..++ +|+.+..|+. T Consensus 82 ~~~~~~~~~~~~~~~~~~E~~e~~W~~~~el~~~~~afp~~~~~i~~ 128 (130) T cd04681 82 DLFFVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVER 128 (130) T ss_pred EEEEEEEECCCCCCCCCCCEEEEEEECHHHCCHHHCCCHHHHHHHHH T ss_conf 99999998798747999825168998687897102598669999998 No 14 >cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.94 E-value=1.1e-25 Score=168.57 Aligned_cols=110 Identities=25% Similarity=0.409 Sum_probs=92.1 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCCCCEEEE Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520-578860699 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH-PYEKFHLLM 90 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~-~~~~~~~~~ 90 (141) |+|+++++++++|||+||++.+..+|+|+||||++|+|||+++||+||++|||||.+.+..+.......+ .....+++. T Consensus 1 vav~vvl~~~~~vLL~~R~~~~~~~G~W~~PGG~ve~GEt~~~aa~REl~EEtGl~v~~~~l~~~~~~~~~~~~~~~~~~ 80 (120) T cd04683 1 VAVYVLLRRDDEVLLQRRANTGYMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDLRLAHTMHRRTEDIESRIG 80 (120) T ss_pred CEEEEEEEECCEEEEEECCCCCCCCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEECCCCCCCEEEE T ss_conf 98999999399999997789999999798975887799999999999988876938873408999988326899879999 Q ss_pred EEEEEEEECCEECC---CHHHEEEECCHHHHCCC Q ss_conf 99999975483768---82331570277883248 Q gi|254780325|r 91 PFFVCHCFEGIPQS---CEGQQLQWVALDDLQNY 121 (141) Q Consensus 91 ~~~~~~~~~~~~~~---~E~~~~~Wi~~~el~~~ 121 (141) ++|.|+.++|+|.. .|+++++|++++++++. T Consensus 81 ~~f~~~~~~g~p~~~~p~e~~~~~Wf~~deLP~~ 114 (120) T cd04683 81 LFFTVRRWSGEPRNCEPDKCAELRWFPLDALPDD 114 (120) T ss_pred EEEEEEEECCEEECCCCCCEEEEEEECHHHCCCC T ss_conf 9999997478986189981458999998899886 No 15 >cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.93 E-value=2e-25 Score=167.01 Aligned_cols=119 Identities=25% Similarity=0.399 Sum_probs=94.6 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) .|+++|++++|+|||+||...+ ..|+|++|||++|+|||+++||+||++|||||+++..++.++....+.....+++.. T Consensus 4 gV~~iv~~~~g~vLL~rR~~~~-~~g~W~lPgG~ve~GEs~~~Aa~REv~EEtGl~v~~~~~~~~~~~~~~~~~~h~i~~ 82 (129) T cd04678 4 GVGVFVLNPKGKVLLGKRKGSH-GAGTWALPGGHLEFGESFEECAAREVLEETGLHIENVQFLTVTNDVFEEEGKHYVTI 82 (129) T ss_pred EEEEEEEECCCEEEEEEECCCC-CCCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCEEEEE T ss_conf 7999999899959999947899-999498981040589889999999999987985252499999887757789469999 Q ss_pred EEEEEEECCEEC--C---CHHHEEEECCHHHHCCC-CCCCCCHHHH Q ss_conf 999997548376--8---82331570277883248-8973698999 Q gi|254780325|r 92 FFVCHCFEGIPQ--S---CEGQQLQWVALDDLQNY-SMLPADLSLI 131 (141) Q Consensus 92 ~~~~~~~~~~~~--~---~E~~~~~Wi~~~el~~~-~~~~~~~~ii 131 (141) +|.|+..+++.. . .|+++++|+++++|+++ +++.+.+.++ T Consensus 83 ~f~~~~~~g~~~~~~~ep~e~~~~~Wf~~deLP~l~pl~~p~~~~~ 128 (129) T cd04678 83 FVKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSVDPLFLPLKNLF 128 (129) T ss_pred EEEEEEECCCCCCCCCCCHHCCEEEEECHHHCCCCCCCCHHHHHHH T ss_conf 9999983782364779932401308999899869863417889964 No 16 >cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.93 E-value=4.7e-25 Score=164.86 Aligned_cols=116 Identities=27% Similarity=0.383 Sum_probs=93.0 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC---CCEE Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520578---8606 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE---KFHL 88 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~---~~~~ 88 (141) +.|++++.++|+|||+||+. .|+|.+|||++|+|||+++||+||++||||+.+++.+++.+....+... ..++ T Consensus 3 v~V~~vv~~dg~vLL~rr~~----~g~W~lPGG~ve~gEt~~eaa~REv~EETGl~v~~~~l~~v~~~~~~~~~~~~~~~ 78 (123) T cd04672 3 VDVRAAIFKDGKILLVREKS----DGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVRKLAAVDDRNKHHPPPQPYQV 78 (123) T ss_pred CEEEEEEEECCEEEEEEECC----CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCCCCCCEEE T ss_conf 20999999899999999889----99398984663799899999999999977909998589999835432799952499 Q ss_pred EEEEEEEEEECCEECCC-HHHEEEECCHHHHCCCCCCCCCHHHH Q ss_conf 99999999754837688-23315702778832488973698999 Q gi|254780325|r 89 LMPFFVCHCFEGIPQSC-EGQQLQWVALDDLQNYSMLPADLSLI 131 (141) Q Consensus 89 ~~~~~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~~~~~~~~~ii 131 (141) ...+|.|+..++++++. |+.+++|+++++++++.+-......| T Consensus 79 ~~~~f~~~~~~g~~~~~~E~~e~~Wf~~deLP~L~~~~~t~~~i 122 (123) T cd04672 79 YKLFFLCEILGGEFKPNIETSEVGFFALDDLPPLSEKRNTEEQI 122 (123) T ss_pred EEEEEEEEECCCCCCCCCHHHEEEEECHHHCCCCCCCCCCHHHH T ss_conf 99999999878938889456436798888998787569897991 No 17 >cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.93 E-value=4.4e-25 Score=165.02 Aligned_cols=119 Identities=29% Similarity=0.417 Sum_probs=95.7 Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC---CCC-- Q ss_conf 999999999359869999917898889838225731017874889999888876265202442025566520---578-- Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH---PYE-- 84 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~---~~~-- 84 (141) +..|+++|++.+|++||++|+. .|+|.||||++|+|||+++||.||++|||||+++...+........ .+. T Consensus 2 ~~gv~~vv~~~~g~vLL~~r~~----~g~W~lPGG~ve~GE~~~~aa~RE~~EEtGl~v~~~~~~~~~~~~~~~~~~~~~ 77 (129) T cd04676 2 LPGVTAVVRDDEGRVLLIRRSD----NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPVHVVTYPNG 77 (129) T ss_pred CCEEEEEEEECCCEEEEEEECC----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCCCCEECCCC T ss_conf 4779999997998099999869----996989925741998989988899999769577872799997264421627999 Q ss_pred -CCEEEEEEEEEEEECCEECC--CHHHEEEECCHHHHCCCCCCCCCHHHHH Q ss_conf -86069999999975483768--8233157027788324889736989999 Q gi|254780325|r 85 -KFHLLMPFFVCHCFEGIPQS--CEGQQLQWVALDDLQNYSMLPADLSLIS 132 (141) Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~~~~~~~~ii~ 132 (141) ..+...++|.|+..++++.. .|+.+++|++++++++++++|+.+..++ T Consensus 78 ~~~~~~~~~f~~~~~~~~~~~~~~E~~e~~Wf~~delp~l~~~p~~R~~i~ 128 (129) T cd04676 78 DVRQYLDITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRID 128 (129) T ss_pred CEEEEEEEEEEEEEECCCCCCCCCCEEEEEEECHHHCCCCCCCCCCHHHCC T ss_conf 869999999998872884559997178889989989969999945043337 No 18 >cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici Probab=99.93 E-value=4e-25 Score=165.25 Aligned_cols=108 Identities=23% Similarity=0.332 Sum_probs=88.3 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) ++|++|+.++|||||+||+..|. .|+|++|||++|.|||+++||+||++||||+.++...+.++.+ +++.+.... T Consensus 14 ~~v~~ii~~~~kILLvrR~~~P~-~g~W~lPGG~vE~gEt~eea~~REv~EEtGl~v~~~~~~~v~~----~p~~~~v~~ 88 (130) T cd04511 14 IIVGCVPEWEGKVLLCRRAIEPR-HGFWTLPAGFMENGETTEQGALRETWEEAGARVEIDGLYAVYS----VPHISQVYM 88 (130) T ss_pred EEEEEEEEECCEEEEEECCCCCC-CCCEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEC----CCCCCEEEE T ss_conf 89999998699999994068999-9958689748658989999999899874097899626999945----787767999 Q ss_pred EEEEEEECCEECCC-HHHEEEECCHHHHC--CCCCC Q ss_conf 99999754837688-23315702778832--48897 Q gi|254780325|r 92 FFVCHCFEGIPQSC-EGQQLQWVALDDLQ--NYSML 124 (141) Q Consensus 92 ~~~~~~~~~~~~~~-E~~~~~Wi~~~el~--~~~~~ 124 (141) +|.|+..+++++.+ |..+++|+++++++ ++.|+ T Consensus 89 ~f~~~~~~g~~~~~~E~~e~~wf~~delP~~~lAf~ 124 (130) T cd04511 89 FYRARLLDLDFAPGPESLEVRLFTEEEIPWDELAFP 124 (130) T ss_pred EEEEEEECCCCCCCCCEEEEEEECHHHCCHHHCCHH T ss_conf 999999127679995201677887889970654516 No 19 >cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability Probab=99.92 E-value=1.4e-24 Score=162.06 Aligned_cols=116 Identities=29% Similarity=0.392 Sum_probs=91.7 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC----CEEE Q ss_conf 999993598699999178988898382257310178748899998888762652024420255665205788----6069 Q gi|254780325|r 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK----FHLL 89 (141) Q Consensus 14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~----~~~~ 89 (141) |++|+.++|+|||+||.+.+ ..|+|+||||++|+|||+++||+||++|||||.++..+++......+..++ .+.+ T Consensus 3 ~~avi~~~~~vLL~rr~~~~-~~g~W~lPGG~ve~gEt~~~aa~REv~EETGl~v~~~~~l~~~~~~~~~~~~~~~~~~v 81 (128) T cd04684 3 AYAVIPRDGKLLLIQKNGGP-YEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIGRRLGSASRYFYSPDGDYDAHHL 81 (128) T ss_pred EEEEEEECCEEEEEEECCCC-CCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCEEEEEE T ss_conf 99999939999999977899-89829898560779989999999999987293788633889999999789997767999 Q ss_pred EEEEEEEEECCEECCC----HHHEEEECCHHHHCCCCCCCCCHHH Q ss_conf 9999999754837688----2331570277883248897369899 Q gi|254780325|r 90 MPFFVCHCFEGIPQSC----EGQQLQWVALDDLQNYSMLPADLSL 130 (141) Q Consensus 90 ~~~~~~~~~~~~~~~~----E~~~~~Wi~~~el~~~~~~~~~~~i 130 (141) .++|.|+..++.+... |..+++|++++++.+..+.|..+.. T Consensus 82 ~~~f~~~~~~g~~~~~~~~ee~~e~~W~~~del~e~~~~P~~~~~ 126 (128) T cd04684 82 CVFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERLLSPLVLWA 126 (128) T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEECHHHHHCCCCCHHHHHH T ss_conf 999999986894056899983059999588994231279478786 No 20 >cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.92 E-value=4.6e-24 Score=159.14 Aligned_cols=114 Identities=27% Similarity=0.415 Sum_probs=89.0 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) +|+++|++++|+|||+||++.+. .|+|+||||++|+|||+++||+||++||||+++++..++.+.. ...++..+ T Consensus 2 vV~avi~~~~g~vLLv~r~~~~~-~g~W~lPGG~vE~GEt~eeaa~REv~EETGl~v~~~~l~~v~~-----~~~~~~~~ 75 (123) T cd04671 2 IVAAVILNNQGEVLLIQEAKRSC-RGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPTTLLSVEE-----QGGSWFRF 75 (123) T ss_pred EEEEEEEECCCEEEEEEECCCCC-CCEEECCEEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEE-----CCCEEEEE T ss_conf 89999998899899999658999-9959798018049989999999999997498889777999992-----69809999 Q ss_pred EEEEEEECCEECC-----CHHHEEEECCHHHHCCCCCCCCCHHHHHHH Q ss_conf 9999975483768-----823315702778832488973698999999 Q gi|254780325|r 92 FFVCHCFEGIPQS-----CEGQQLQWVALDDLQNYSMLPADLSLISFL 134 (141) Q Consensus 92 ~~~~~~~~~~~~~-----~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l 134 (141) +|.|+...+++.. .|..+++|+++++|+. ++. .+.++..+ T Consensus 76 ~f~~~~~~G~l~~~~~~~~E~~ea~Wf~~deLP~-pl~--~~~~~~~~ 120 (123) T cd04671 76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPL-PLR--AHDILSLI 120 (123) T ss_pred EEEEEEECCEECCCCCCCCCEEEEEEECHHHCCC-CCC--CCHHHHHH T ss_conf 9999992765116899998779989988899868-764--04345463 No 21 >cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.91 E-value=5e-24 Score=158.93 Aligned_cols=110 Identities=26% Similarity=0.361 Sum_probs=87.3 Q ss_pred EEEEEEECCCEEEEEEECCCCC--CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE Q ss_conf 9999993598699999178988--89838225731017874889999888876265202442025566520578860699 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKS--HGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM 90 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~--~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~ 90 (141) |+++|+.++|++|+++|++++. +||+|+||||++|+|||+++|+.||++||+|+++....+.....+.. ....... T Consensus 3 ~a~al~~~~g~vLl~~R~~~~~~~~pg~W~~pGG~~e~~E~~~~~~~RE~~EE~gl~~~~~~~~~~~~~~~--~~~~~~~ 80 (122) T cd04682 3 VALALLIGDGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRIPWFRVYPS--ASPPGTE 80 (122) T ss_pred EEEEEEECCCEEEEEECCCCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEEEECC--CCCCCEE T ss_conf 79999967997999989999999989938799666679989999999999998888567000202785215--7899479 Q ss_pred EEEEEEEECC---EECCCHHHEEEECCHHHHCCCCCC Q ss_conf 9999997548---376882331570277883248897 Q gi|254780325|r 91 PFFVCHCFEG---IPQSCEGQQLQWVALDDLQNYSML 124 (141) Q Consensus 91 ~~~~~~~~~~---~~~~~E~~~~~Wi~~~el~~~~~~ 124 (141) ++|.+..... .+.+.|+++++|++++|+.+.+.+ T Consensus 81 ~~F~~~l~~~~~~~~~~~Egq~~~W~~~eEll~~~~a 117 (122) T cd04682 81 HVFVVPLTAREDAILFGDEGQALRLMTVEEFLAHEDA 117 (122) T ss_pred EEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHCCCC T ss_conf 9999840056315356873307687459999648366 No 22 >cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.91 E-value=8.5e-24 Score=157.60 Aligned_cols=113 Identities=30% Similarity=0.426 Sum_probs=89.5 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE------CCCCC Q ss_conf 999999935986999991789888983822573101787488999988887626520244202556652------05788 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS------HPYEK 85 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~------~~~~~ 85 (141) +.|++|+.++|++||+||.+++ +.+|.||||++|+|||+++|++||++||||++++..+++.+.... +.+.+ T Consensus 2 ~~a~AvI~~~~~vLL~r~~~~~--~~~w~lPGG~ve~GEt~~~Al~RE~~EEtGl~v~v~~l~~v~e~~~~~~~~~~~~~ 79 (128) T cd04687 2 NSAKAVIIKNDKILLIKHHDDG--GVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGPLLFVREYIGHNPTSELPGH 79 (128) T ss_pred CEEEEEEEECCEEEEEEECCCC--CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECCEEEEEEECCCCCCCCCCCC T ss_conf 4799999989999999983699--81698988667699799999999887863967885608999970132556678885 Q ss_pred CEEEEEEEEEEEECCEECCC------HHHEEEECCHHHHCCCCCCCC Q ss_conf 60699999999754837688------233157027788324889736 Q gi|254780325|r 86 FHLLMPFFVCHCFEGIPQSC------EGQQLQWVALDDLQNYSMLPA 126 (141) Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~------E~~~~~Wi~~~el~~~~~~~~ 126 (141) +|.+.++|.|+..++.+... +..+++|+++++|.++++.|+ T Consensus 80 ~h~v~~~f~~~~~~g~~~~~~~~~d~~~~~~~Wv~ldeL~~~~l~P~ 126 (128) T cd04687 80 FHQVELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIPLYPS 126 (128) T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHCCCCCCCC T ss_conf 49999999999868954667778876657899804999566988998 No 23 >cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.91 E-value=8.2e-24 Score=157.70 Aligned_cols=121 Identities=27% Similarity=0.434 Sum_probs=89.3 Q ss_pred CCEEEEEE-EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE--C-- Q ss_conf 86499999-999935986999991789888983822573101787488999988887626520244202556652--0-- Q gi|254780325|r 7 KKILLVVA-CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS--H-- 81 (141) Q Consensus 7 k~~~~vv~-~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~--~-- 81 (141) .+.+.+.| ++|++++|+|||++|+. +|.|+||||++|+|||+++||+||++|||||.+...++++..... + T Consensus 3 ~p~~~~g~~~vv~~~~g~vLL~~r~~----~g~W~lPGG~ve~gEt~~~aa~RE~~EEtGi~~~~~~~~~~~~~~~~~~~ 78 (132) T cd04677 3 RPLILVGAGVILLNEQGEVLLQKRSD----TGDWGLPGGAMELGESLEETARRELKEETGLEVEELELLGVYSGKEFYVK 78 (132) T ss_pred CCEEEEEEEEEEEECCCEEEEEEECC----CCCEECCEEEECCCCCHHHHHHHHHHHHHCCEEEEEEEEEEECCCEEEEC T ss_conf 86778579999998999899999889----99498984276699799999999999986955352479999778645544 Q ss_pred -CCC-CCEEEEEEEEEEEECCEEC--CCHHHEEEECCHHHHCCCCCCCCCHHHHH Q ss_conf -578-8606999999997548376--88233157027788324889736989999 Q gi|254780325|r 82 -PYE-KFHLLMPFFVCHCFEGIPQ--SCEGQQLQWVALDDLQNYSMLPADLSLIS 132 (141) Q Consensus 82 -~~~-~~~~~~~~~~~~~~~~~~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~ 132 (141) +.. ..+....+|.|...++.+. ..|+.+++|+++++++++ +.|.++++|+ T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~e~~Wf~~delp~l-~~p~~r~~ie 132 (132) T cd04677 79 PNGDDEQYIVTLYYVTKVFGGKLVPDGDETLELKFFSLDELPEL-INPQHKEMLQ 132 (132) T ss_pred CCCCCEEEEEEEEEEEEECCCCCCCCCCCEEEEEEECHHHCCCC-CCHHHHHHCC T ss_conf 89984799999999986258756799970158999829998344-8922575609 No 24 >cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us Probab=99.91 E-value=9.7e-24 Score=157.26 Aligned_cols=110 Identities=20% Similarity=0.325 Sum_probs=85.7 Q ss_pred EEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE Q ss_conf 99999999359869999917898889838225731017874889999888876265202442025566520578860699 Q gi|254780325|r 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM 90 (141) Q Consensus 11 ~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~ 90 (141) .+++++|++++|++||+||...+ ..|+|.||||++|+|||+++||+||++||||+.+.+.++++.....++.+. .... T Consensus 14 ~AagavV~n~~g~vLLvrr~~~p-~~g~W~lPgG~vE~GEt~~eAa~REv~EETGl~v~~~~~l~~~~~~~~~g~-~~~~ 91 (142) T cd04700 14 RAAGAVILNERNDVLLVQEKGGP-KKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPVKFLGTYLGRFDDGV-LVLR 91 (142) T ss_pred EEEEEEEEECCCEEEEEEECCCC-CCCEEECCEECCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCC-EEEE T ss_conf 49999999699989999976899-899897983338799699999999999966978888889899946807998-8999 Q ss_pred EEEEEEEECCE--EC-CCHHHEEEECCHHHHCCCC Q ss_conf 99999975483--76-8823315702778832488 Q gi|254780325|r 91 PFFVCHCFEGI--PQ-SCEGQQLQWVALDDLQNYS 122 (141) Q Consensus 91 ~~~~~~~~~~~--~~-~~E~~~~~Wi~~~el~~~~ 122 (141) ++|.|+...+. |+ ..|..+++|++++|++++. T Consensus 92 ~~fl~~~~~~~~~p~~~dE~~e~~Wf~~~El~~L~ 126 (142) T cd04700 92 HVWLAEPEGQTLAPKFTDEIAEASFFSREDVAQLY 126 (142) T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEECHHHHHHHH T ss_conf 99999974883256999876788998599955545 No 25 >cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close Probab=99.90 E-value=3.9e-23 Score=153.76 Aligned_cols=112 Identities=23% Similarity=0.309 Sum_probs=86.9 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC------- Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520578------- Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE------- 84 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~------- 84 (141) .|.++|.+.+|++||++|.+.|. +|+|.+|||+++.|||+++|++||++||||+.+++.+...++.+.|.|+ T Consensus 14 ~V~~vI~n~~g~iLL~kR~~~p~-~g~W~~PGG~i~~gEt~~~a~~Re~~eE~Gl~i~~~~~~~~Gv~eh~y~d~~~~~~ 92 (144) T cd03430 14 SIDLIVENEDGQYLLGKRTNRPA-QGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDAELLGVFEHFYDDNFFGDD 92 (144) T ss_pred EEEEEEECCCCCEEEEECCCCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCEEEEEEEEECCCCCCCCC T ss_conf 99999997999699998169988-99498983447799799999999999974971640344897758998267777898 Q ss_pred -CCEEEEEEEEEEEECCEECC--CHHHEEEECCHHHHCCCCCC Q ss_conf -86069999999975483768--82331570277883248897 Q gi|254780325|r 85 -KFHLLMPFFVCHCFEGIPQS--CEGQQLQWVALDDLQNYSML 124 (141) Q Consensus 85 -~~~~~~~~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~~~ 124 (141) ..|+++..|.|+..++++.. .||++++|++++++.+.+.. T Consensus 93 ~~~H~V~l~y~~~~~~~e~~~~ddeh~e~~Wf~~del~~~~~v 135 (144) T cd03430 93 FSTHYVVLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADDDV 135 (144) T ss_pred CCEEEEEEEEEEEECCCCCCCCHHHCCEEEEECHHHHHCCCCC T ss_conf 5309999999999558975599457006699679995217766 No 26 >cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.90 E-value=7.4e-23 Score=152.19 Aligned_cols=125 Identities=24% Similarity=0.273 Sum_probs=89.0 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCE-EEE Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520578860-699 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH-LLM 90 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~-~~~ 90 (141) +|+.-.++.+.+|||.||++ ..+|.|+||||++|+|||+.+||.||++|||||++............+...+.. ... T Consensus 4 ~v~~~~~~~~~~~LlLkR~~--~~~g~W~~p~G~iE~gEs~~eaA~REl~EETGl~~~~l~~~~~~~~~y~~~~~~i~~~ 81 (131) T cd04695 4 GVLLRSLDKETKVLLLKRVK--TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNADYLEQFYEANDNRILMA 81 (131) T ss_pred EEEEEEECCCCEEEEEECCC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCCEEEEE T ss_conf 99999989988899997689--9999586982334699999999999888977877434771242688998489769999 Q ss_pred EEEEEEEECC-EEC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 9999997548-376-88233157027788324889736989999998721 Q gi|254780325|r 91 PFFVCHCFEG-IPQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA 138 (141) Q Consensus 91 ~~~~~~~~~~-~~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~ 138 (141) .+|.+...+. .+. ..||.+++|++++++.++..+|..+.++..+++|+ T Consensus 82 ~~f~~~~~~~~~v~ls~Eh~~y~W~~~eea~~ll~~~~~r~~l~~~~~~~ 131 (131) T cd04695 82 PVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHVWRYF 131 (131) T ss_pred EEEEEEECCCCCCCCCCCCCCCEECCHHHHHHHCCCCCHHHHHHHHHHHC T ss_conf 99999938999782562032089718999996769967899999999759 No 27 >cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.90 E-value=7.4e-23 Score=152.18 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=82.4 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) .|+++|++++|++|+++|... ..|.|+||||++|+|||+++||+||++||||++++...++..... +++... .... T Consensus 4 gv~avi~n~~~~vLlv~~~~~--~~g~W~lPgG~ve~GEt~~eaa~REv~EEtGl~v~~~~~l~~~~~-~~~~~~-~~~~ 79 (127) T cd04670 4 GVGGLVLNEKNEVLVVQERNK--TPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVSVVGFRHA-HPGAFG-KSDL 79 (127) T ss_pred EEEEEEEECCCEEEEEEECCC--CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEC-CCCCCC-CEEE T ss_conf 899999979999999997789--999589982031599799999999999987945689758989960-798889-7179 Q ss_pred EEEEE--EECCEE--CCCHHHEEEECCHHHHCCCCCCCCCHHH Q ss_conf 99999--754837--6882331570277883248897369899 Q gi|254780325|r 92 FFVCH--CFEGIP--QSCEGQQLQWVALDDLQNYSMLPADLSL 130 (141) Q Consensus 92 ~~~~~--~~~~~~--~~~E~~~~~Wi~~~el~~~~~~~~~~~i 130 (141) +|.|. ..++.+ ...|..+++|++++|+.++++.+...++ T Consensus 80 ~f~~~~~~~~~~i~~~~~Ei~e~~W~~~~El~~~p~~~~~~r~ 122 (127) T cd04670 80 YFICRLKPLSFDINFDTSEIAAAKWMPLEEYISQPITSEVNRL 122 (127) T ss_pred EEEEEEECCCCCCCCCCCCEEEEEEECHHHHHCCCCCHHHHHH T ss_conf 9999998188877889850578788369998708870466665 No 28 >cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, Probab=99.90 E-value=1.1e-22 Score=151.28 Aligned_cols=108 Identities=27% Similarity=0.412 Sum_probs=90.9 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) .|++|+.++||+||++|..++ .+.|.+|||++|+|||+.+|+.||++||||+.+++..++++..+..+..+.++..++ T Consensus 2 tVaavv~~~gr~LLV~~~~~~--~~~~~~PgG~~e~gE~~~~a~~RE~~EEtG~~v~~~~~~g~~~~~~~~~~~~ylr~~ 79 (134) T cd03675 2 TVAAVVERDGRFLLVEEETDG--GLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTALLGIYQWTAPDSDTTYLRFA 79 (134) T ss_pred EEEEEEEECCEEEEEEEECCC--CCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEEE T ss_conf 899999979999999996599--972989822788998999999999999757767761799999875589996189999 Q ss_pred EEEEEECCEEC---CCHHHEEEECCHHHHCCCC Q ss_conf 99997548376---8823315702778832488 Q gi|254780325|r 93 FVCHCFEGIPQ---SCEGQQLQWVALDDLQNYS 122 (141) Q Consensus 93 ~~~~~~~~~~~---~~E~~~~~Wi~~~el~~~~ 122 (141) |.|+..++.+. ..|..+.+|++++|+..+. T Consensus 80 F~~~~~~~~~~~~~D~eI~~a~W~tldEi~~~~ 112 (134) T cd03675 80 FAAELLEHLPDQPLDSGIVRAHWLTLEEILALA 112 (134) T ss_pred EEEEECCCCCCCCCCCCCEEEEECCHHHHHHHH T ss_conf 999977899888999860241727899986525 No 29 >cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.90 E-value=4.3e-23 Score=153.53 Aligned_cols=107 Identities=31% Similarity=0.472 Sum_probs=83.6 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEE Q ss_conf 99999359869999917898889838225731017874889999888876265202442025566520578860699999 Q gi|254780325|r 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFF 93 (141) Q Consensus 14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141) +++|++++|+|||+||+ .|.|.||||++|+|||+.+||.||++|||||.+....++ ..+. ..+ ...++| T Consensus 3 A~vi~~~~g~vLLvrr~-----~g~W~lPGG~ve~GEt~~~Aa~RE~~EEtGl~~~~~~~~--~~~~--~~~--~~~~~f 71 (112) T cd04667 3 ATVICRRGGRVLLVRKS-----GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDLLYL--FHVD--GGS--TRHHVF 71 (112) T ss_pred EEEEEECCCEEEEEEEC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE--EEEE--CCC--EEEEEE T ss_conf 89999709999999918-----993889874888998999999999999869376546999--9990--898--899999 Q ss_pred EEEEECC-EECC-CHHHEEEECCHHHHCCCCCCCCCHHHH Q ss_conf 9997548-3768-823315702778832488973698999 Q gi|254780325|r 94 VCHCFEG-IPQS-CEGQQLQWVALDDLQNYSMLPADLSLI 131 (141) Q Consensus 94 ~~~~~~~-~~~~-~E~~~~~Wi~~~el~~~~~~~~~~~ii 131 (141) .+....+ .+.+ .|+.+++||+++++.+++++|+++.++ T Consensus 72 ~~~~~~~~~~~~~~E~~e~rW~~~del~el~~~~~~R~iv 111 (112) T cd04667 72 VASVPPSAQPKPSNEIADCRWLSLDALGDLNASAATRLIV 111 (112) T ss_pred EEEECCCCCCCCCCCCEEEEEEEHHHCCCCCCCHHHHHHC T ss_conf 9997588641899742147998699963688994672101 No 30 >cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.90 E-value=1.2e-22 Score=150.88 Aligned_cols=110 Identities=27% Similarity=0.434 Sum_probs=87.4 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEE--ECCCCCCEEEE Q ss_conf 9999993598699999178988898382257310178748899998888762652024420255665--20578860699 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFI--SHPYEKFHLLM 90 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~--~~~~~~~~~~~ 90 (141) -|++|+.++|+||++++.. .++|.+|||++|+|||+++|++||++||||+.++..+++++... .+...+.+... T Consensus 3 rv~aii~~~~~vLl~~~~~----~~~w~lPGG~ve~gEt~~eA~~RE~~EEtGl~v~~~~l~~v~e~~f~~~~~~~h~i~ 78 (126) T cd04688 3 RAAAIIIHNGKLLVQKNPD----ETFYRPPGGGIEFGESSEEALIREFKEELGLKIEITRLLGVVENIFTYNGKPGHEIE 78 (126) T ss_pred EEEEEEEECCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEEEECCCCCCEEEE T ss_conf 9999999899999999779----998999853436998999999888888759678824699999768872997547999 Q ss_pred EEEEEEEECCEECCC---------HHHEEEECCHHHHCCCCCCCC Q ss_conf 999999754837688---------233157027788324889736 Q gi|254780325|r 91 PFFVCHCFEGIPQSC---------EGQQLQWVALDDLQNYSMLPA 126 (141) Q Consensus 91 ~~~~~~~~~~~~~~~---------E~~~~~Wi~~~el~~~~~~~~ 126 (141) ++|.|+..++.+... +..+++|++++++.++++.|. T Consensus 79 ~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~Wv~ldeL~~l~l~P~ 123 (126) T cd04688 79 FYYLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIKLYPE 123 (126) T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCEEEEEECCHHHHCCCCCCCC T ss_conf 999999978855778764327798799999847999276887970 No 31 >cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s Probab=99.89 E-value=1.2e-22 Score=150.98 Aligned_cols=120 Identities=25% Similarity=0.341 Sum_probs=90.3 Q ss_pred EEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE----EEEECCCC Q ss_conf 49999999993598699999178988898382257310178748899998888762652024420255----66520578 Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL----TFISHPYE 84 (141) Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~----~~~~~~~~ 84 (141) .+.|+ ....+++++|||+||+.. ++|+|++|||++|+|||+.+||.||++|||||.+.....+.. ..+..... T Consensus 3 ~v~vv-~~~~~~~~~vLll~Rs~~--~~G~W~~p~G~ve~gE~~~~aA~REi~EETGl~~~~~~~~~~~~~~~~~~~~~~ 79 (129) T cd04664 3 SVLVV-PYRLTGEGRVLLLRRSDK--YAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDRGASIAFVEFTDN 79 (129) T ss_pred EEEEE-EEEECCCCEEEEEECCCC--CCCCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCEEEEEEECCC T ss_conf 89999-999889998999987999--989391987322899799999999999988898301799861458999996589 Q ss_pred CCEEEEEEEEEEEECCE-EC-CCHHHEEEECCHHHHCCCCCCCCCHHHH Q ss_conf 86069999999975483-76-8823315702778832488973698999 Q gi|254780325|r 85 KFHLLMPFFVCHCFEGI-PQ-SCEGQQLQWVALDDLQNYSMLPADLSLI 131 (141) Q Consensus 85 ~~~~~~~~~~~~~~~~~-~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii 131 (141) +..+..++|.+...+.. +. ..||.+++|++++++.++..+++++.++ T Consensus 80 ~~~~~~~~f~~~v~~~~~v~l~~EH~~~~W~~~~ea~~~l~~~~~r~a~ 128 (129) T cd04664 80 GRVWTEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALLLWESNRRAW 128 (129) T ss_pred CEEEEEEEEEEECCCCCCCCCCCCCCCEEECCHHHHHHHCCCHHHHHHH T ss_conf 8589999999986789877687444721883699999765993366875 No 32 >cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy Probab=99.89 E-value=1.9e-22 Score=149.78 Aligned_cols=118 Identities=33% Similarity=0.553 Sum_probs=95.1 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) +|+++|++.++++||+||... .+|+|.||||++|+|||+++||+||++||||+++......+...........+...+ T Consensus 2 ~~~~ii~~~~~~vLl~~r~~~--~~~~w~~PgG~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (123) T cd02883 2 AVGAVILDEDGRVLLVRRADS--PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVLRLLGVYEVESPDEGEHAVVF 79 (123) T ss_pred EEEEEEEECCCEEEEEEECCC--CCCEEECCCEECCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEEECCCCCCEEEEE T ss_conf 999999979999999994289--989599981431599898997566788985945677589999998777899669999 Q ss_pred EEEEEEECCEE---CCCHHHEEEECCHHHHCCCCCCCCCHHHH Q ss_conf 99999754837---68823315702778832488973698999 Q gi|254780325|r 92 FFVCHCFEGIP---QSCEGQQLQWVALDDLQNYSMLPADLSLI 131 (141) Q Consensus 92 ~~~~~~~~~~~---~~~E~~~~~Wi~~~el~~~~~~~~~~~ii 131 (141) +|.|+..++.+ ...|+.+++|++++++.++.+.+.+++.+ T Consensus 80 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~ 122 (123) T cd02883 80 VFLARLVGGEPTLLPPDEISEVRWVTLDELPALALSPALRPAL 122 (123) T ss_pred EEEEEECCCCCCCCCCCCEEEEEEEEHHHHHCCCCCHHHHHHH T ss_conf 9999995895212898668999998499913499983675965 No 33 >cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.89 E-value=1.5e-22 Score=150.47 Aligned_cols=114 Identities=29% Similarity=0.329 Sum_probs=86.4 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) |+++|++.+|+|||+||+. ++.|+||||++|+|||+++||.||++|||||.+.....+ ...+.+........+++ T Consensus 3 v~~vv~~~~g~vLL~rr~~----~~~W~lPGG~ve~gEs~~~aa~RE~~EEtGl~v~~~~~l-~~~~~~~~~~~~~~~~~ 77 (120) T cd04680 3 ARAVVTDADGRVLLVRHTY----GPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVAEL-LGVYYHSASGSWDHVIV 77 (120) T ss_pred EEEEEECCCCEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE-EEEEECCCCCCCEEEEE T ss_conf 9999992999099998679----991999954716998999999999999869755515479-99982589997539999 Q ss_pred EEEEEECCEEC--CCHHHEEEECCHHHHCCCCCCCCCHHHHH Q ss_conf 99997548376--88233157027788324889736989999 Q gi|254780325|r 93 FVCHCFEGIPQ--SCEGQQLQWVALDDLQNYSMLPADLSLIS 132 (141) Q Consensus 93 ~~~~~~~~~~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~ 132 (141) |.|....+... ..|+.+++|+++++|++ ++.|+++..|. T Consensus 78 f~~~~~~~~~~~~~~E~~e~~Wf~~d~LPe-~l~p~~~~~i~ 118 (120) T cd04680 78 FRARADTQPVIRPSHEISEARFFPPDALPE-PTTPATRRRIA 118 (120) T ss_pred EEEEECCCCCCCCCHHHHCEEEECHHHCCC-CCCHHHHHHHH T ss_conf 999824888679983674113988889888-78977999975 No 34 >cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Probab=99.89 E-value=2.1e-22 Score=149.62 Aligned_cols=120 Identities=28% Similarity=0.405 Sum_probs=89.7 Q ss_pred EEEEEEEECC---CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC--CC Q ss_conf 9999999359---869999917898889838225731017874889999888876265202442025566520578--86 Q gi|254780325|r 12 VVACAVFEPG---GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE--KF 86 (141) Q Consensus 12 vv~~~ii~~~---~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~--~~ 86 (141) ++++++++.. .+|||++|.+ .|.|.||||++|+|||+.+||.||++|||||++.....++...+..... .. T Consensus 3 aaG~vv~r~~~~~~~vLLv~r~~----~~~W~lPgG~ve~gEs~~eaa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 78 (131) T cd03673 3 AAGGVVFRGSDGGIEVLLIHRPR----GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVGDPLGTIRYWFSSSGKRV 78 (131) T ss_pred EEEEEEEEECCCCEEEEEEEECC----CCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCEEEEEEECCCCEE T ss_conf 89999997169967999999589----99799982452799799999999999987953898427116689973499607 Q ss_pred EEEEEEEEEEEECCEE--C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH Q ss_conf 0699999999754837--6-88233157027788324889736989999998 Q gi|254780325|r 87 HLLMPFFVCHCFEGIP--Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFLR 135 (141) Q Consensus 87 ~~~~~~~~~~~~~~~~--~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~ 135 (141) +..+++|.++..++.+ . ..|+.+++|++++++.++..+|.++.++.... T Consensus 79 ~~~v~~f~~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~l~~~~~r~il~~al 130 (131) T cd03673 79 HKTVHWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131) T ss_pred EEEEEEEEEEEECCCCCCCCCCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHH T ss_conf 8899999999967953207886541799921999977659987999999972 No 35 >cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil Probab=99.89 E-value=2.7e-22 Score=148.97 Aligned_cols=119 Identities=28% Similarity=0.303 Sum_probs=83.6 Q ss_pred EEEEEEEE-CCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE------EE---C Q ss_conf 99999993-59869999917898889838225731017874889999888876265202442025566------52---0 Q gi|254780325|r 12 VVACAVFE-PGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF------IS---H 81 (141) Q Consensus 12 vv~~~ii~-~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~------~~---~ 81 (141) ++.++|++ ++|+|||++|++ .|.|.+|||++|+|||+.+||+||++|||||+++......... +. . T Consensus 4 ~~~~~Vv~~~~g~vLLv~~~~----~g~W~lPGG~ve~gEt~~~Aa~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 79 (138) T cd03674 4 TASAFVVNPDRGKVLLTHHRK----LGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPK 79 (138) T ss_pred EEEEEEEECCCCEEEEEEECC----CCEEECCCCEECCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCEEEEEEECCCCC T ss_conf 799999978999899998659----9929899658679889999999999998798732225604340578987668567 Q ss_pred CCCCCEE-EEEEEEEEEECCEE--C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHH Q ss_conf 5788606-99999999754837--6-8823315702778832488973698999999 Q gi|254780325|r 82 PYEKFHL-LMPFFVCHCFEGIP--Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFL 134 (141) Q Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~--~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l 134 (141) .....++ ....|.+....+.+ . ..|+.+++|++++++.++++++..++++... T Consensus 80 ~~~~~~~h~~v~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~~~rr~i~~a 136 (138) T cd03674 80 RGVPGHLHLDLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKA 136 (138) T ss_pred CCCCCEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEHHHCCCCCCCHHHHHHHHHH T ss_conf 888876999999999962888666899732102998599930258997699999997 No 36 >PRK09438 ntpA dATP pyrophosphohydrolase; Provisional Probab=99.89 E-value=1.9e-22 Score=149.79 Aligned_cols=133 Identities=26% Similarity=0.340 Sum_probs=97.9 Q ss_pred CCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE----- Q ss_conf 864478649999999993598699999178988898382257310178748899998888762652024420255----- Q gi|254780325|r 2 IDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL----- 76 (141) Q Consensus 2 ~~~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~----- 76 (141) |.|.-|.++ +|.++|.+.++++||++|..+ ||+|++|||++|+|||+.+||.||++|||||++....+... T Consensus 1 ~~~~yk~p~-svlvvi~~~~~~vLl~~R~~~---~~~W~~~~G~~e~gE~~~~aa~RE~~EEtGi~~~~~~~~L~D~~~~ 76 (148) T PRK09438 1 MTMPYKIPV-SVLVVIYTPDLKVLMLQRADD---PDFWQSVTGSLEEGETPAQTAAREVKEETGIDVAAEQLTLIDCQRT 76 (148) T ss_pred CCCCCCCCC-EEEEEEECCCCCEEEEEECCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEECCCCCE T ss_conf 998989997-799999859998999997489---9967098312689979899999999998686225671364266520 Q ss_pred EE------EECCCCCC--EEEEEEEEEEEECC-EECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 66------52057886--06999999997548-37688233157027788324889736989999998721 Q gi|254780325|r 77 TF------ISHPYEKF--HLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA 138 (141) Q Consensus 77 ~~------~~~~~~~~--~~~~~~~~~~~~~~-~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~ 138 (141) .. +.|.|... +-.-++|.+...+. .+..+||.+++|++.++..++.++++|+..|..|.++. T Consensus 77 ~~yeI~~~wr~RY~pgv~~n~EhvF~l~l~~~~~V~LsEH~~~~Wl~~~eA~~l~~s~sN~~Ai~~l~~~~ 147 (148) T PRK09438 77 VEYEIFPHWRHRYAPGVTHNTEHWFCLALPHERPVVLTEHLAYQWLPAEEAAALTKSPSNAEAILQLVINA 147 (148) T ss_pred EEEECCHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHHHC T ss_conf 23211442222048885241679999985889972120143245247999999866933199999998634 No 37 >cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.88 E-value=4.5e-22 Score=147.65 Aligned_cols=107 Identities=30% Similarity=0.485 Sum_probs=83.7 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) ++++|++++|++||+||.+++ .++|.||||++|+|||+++|++||++||||+++....++..... ... ..++ T Consensus 3 a~~ii~~~~~~vLl~~r~~~~--~~~w~~PGG~ve~gEt~~~a~~RE~~EE~g~~v~~~~~~~~~~~--~~~----~~~~ 74 (121) T cd04669 3 ASIVIINDQGEILLIRRIKPG--KTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEEIFLIVNQ--NGR----TEHY 74 (121) T ss_pred EEEEEEECCCEEEEEEECCCC--CCEEECCCCEECCCCCHHHHHHHHHHHHCCCEEEEEEEEEEEEE--CCC----EEEE T ss_conf 899999779999999984899--98698996060599999999999988760988996559999974--798----0699 Q ss_pred EEEEEECCEECCC-----------HHHEEEECCHHHHCCCCCCCCC Q ss_conf 9999754837688-----------2331570277883248897369 Q gi|254780325|r 93 FVCHCFEGIPQSC-----------EGQQLQWVALDDLQNYSMLPAD 127 (141) Q Consensus 93 ~~~~~~~~~~~~~-----------E~~~~~Wi~~~el~~~~~~~~~ 127 (141) |.|+...+.+... +.-++.|+++++|..+++.|++ T Consensus 75 F~~~i~~g~~~~~~~~e~~~~~~~~~~e~~WvpldeL~~l~l~P~~ 120 (121) T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIPLRPEQ 120 (121) T ss_pred EEEEEECCEECCCCCCCCCCCCCCCEEEEEEEEHHHHCCCCCCCCC T ss_conf 9999981478158784235778887289999779992728989887 No 38 >pfam00293 NUDIX NUDIX domain. Probab=99.87 E-value=2.1e-21 Score=143.82 Aligned_cols=124 Identities=31% Similarity=0.503 Sum_probs=93.9 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) .|.+++++.++++||++|.+.+..+++|+||||++++|||+.+||+||++||||+.+..........+..+........+ T Consensus 4 ~v~vvi~~~~~~vll~~r~~~~~~~~~w~~PgG~ve~gE~~~~aa~RE~~EE~Gi~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (133) T pfam00293 4 AVGVVLLNEDGEVLLVRRSRTPGTPGLWELPGGKVEPGESPEEAAVRELEEETGLRVLLLLLLGVLEYPAPGRDLREHVH 83 (133) T ss_pred EEEEEEEECCCEEEEEEEECCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCCCEEEE T ss_conf 89999994899899999276899998499984557279889999999988975951157899999986499999829999 Q ss_pred EEEEEEECCE--EC--CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH Q ss_conf 9999975483--76--88233157027788324889736989999998 Q gi|254780325|r 92 FFVCHCFEGI--PQ--SCEGQQLQWVALDDLQNYSMLPADLSLISFLR 135 (141) Q Consensus 92 ~~~~~~~~~~--~~--~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~ 135 (141) +|.+...... +. ..|+.+++|++++++.++........++..+. T Consensus 84 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~e~~~~~~~~~~~~~~~~~~ 131 (133) T pfam00293 84 VFLAELLGGEPEPQPDPGEVSEVRWVPLEELLELLLAGEIREVIALLL 131 (133) T ss_pred EEEEEEECCCCCCCCCCCEEEEEEEEEHHHHHHHHHCCCHHHHHHHHH T ss_conf 999998168644668978389999999999998878897389999997 No 39 >cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.85 E-value=7.2e-21 Score=140.73 Aligned_cols=109 Identities=27% Similarity=0.373 Sum_probs=81.8 Q ss_pred EEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE--EEEEEECCC------ Q ss_conf 99999935986999991789-888983822573101787488999988887626520244202--556652057------ Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLV--PLTFISHPY------ 83 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~--~~~~~~~~~------ 83 (141) |+++|.+.+|++||+||+.+ ..+||+|.||||++|.|||+.+||.||++|||||.+.+.+.. ....+...| T Consensus 4 Va~ii~d~dgrvLL~rRs~~~~~~Pg~W~~PGG~ve~GEt~~eaa~REl~EEtGL~v~p~~~~~~~l~l~EsvyP~~l~~ 83 (143) T cd04694 4 VAVLLQSSDQKLLLTRRASSLRIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSR 83 (143) T ss_pred EEEEEECCCCEEEEEEECCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHCCCEEEEEEEECCCCCCCC T ss_conf 99999989992999985898889998171887745899898999999998976763470112212446876307740145 Q ss_pred --CCCEEEEEEEEEEEECCE--------ECCCHHHEEEECCHHHHCCC Q ss_conf --886069999999975483--------76882331570277883248 Q gi|254780325|r 84 --EKFHLLMPFFVCHCFEGI--------PQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 84 --~~~~~~~~~~~~~~~~~~--------~~~~E~~~~~Wi~~~el~~~ 121 (141) +..|.++.|+.|...+.. +.+.|++.+.|++++.+... T Consensus 84 glP~~HhIviy~~~~~~~~~~~~q~~l~~~~~ev~~~~Wl~~~~~~~~ 131 (143) T cd04694 84 GLPKRHHIVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAV 131 (143) T ss_pred CCCCCEEEEEEEEEEECCCHHHHHCCCCCCHHHCCEEEECCHHHHHHH T ss_conf 887633899999998366034220123789667642485189999999 No 40 >COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism] Probab=99.85 E-value=3.3e-20 Score=136.88 Aligned_cols=133 Identities=26% Similarity=0.368 Sum_probs=90.7 Q ss_pred CCCCCCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC Q ss_conf 86447864999999999359869999917898889838225731017874889999888876265202442025566520 Q gi|254780325|r 2 IDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH 81 (141) Q Consensus 2 ~~~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~ 81 (141) +.|.|..+.. ++++++..+++|||+||.+.+. +|+|.||||++|.|||+++||.||++||||+++...++..+..... T Consensus 2 ~~~~~~~p~~-~v~~~i~~~~~iLLvrR~~~p~-~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~~~~v~~~~~ 79 (145) T COG1051 2 LAMGYRTPLV-AVGALIVRNGRILLVRRANEPG-AGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLELLAVFDDPG 79 (145) T ss_pred CCCCCCCCCE-EEEEEEECCCEEEEEEECCCCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEECCCC T ss_conf 8667787430-5789994288599998668888-9868188662789988899999999998788654306888854888 Q ss_pred CCCCCEEEEEEEEEEEECCEECCC---HHHEEEECCHHHHCCCCCCC-CCHHHHHHHHH Q ss_conf 578860699999999754837688---23315702778832488973-69899999987 Q gi|254780325|r 82 PYEKFHLLMPFFVCHCFEGIPQSC---EGQQLQWVALDDLQNYSMLP-ADLSLISFLRK 136 (141) Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~---E~~~~~Wi~~~el~~~~~~~-~~~~ii~~l~~ 136 (141) ..+..+.+.++|.+....+.+... +.....|++.+++.....+. .++.-+..+.. T Consensus 80 rd~r~~~v~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~l~~~~~~~~~~~~~l~~~~~ 138 (145) T COG1051 80 RDPRGHHVSFLFFAAEPEGELLAGDGDDAAEVGWFPLDELPELPLPLAFTLADLRRLFL 138 (145) T ss_pred CCCCEEEEEEEEEEECCCCCCCCCCHHHHHHCCEECHHHCCCCCCCCCCCHHHHHHHHH T ss_conf 78852699999999714786666772647627526454554544431022999999975 No 41 >cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp Probab=99.85 E-value=1.6e-20 Score=138.70 Aligned_cols=106 Identities=31% Similarity=0.407 Sum_probs=82.4 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCC--CCEEE Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566520578--86069 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYE--KFHLL 89 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~--~~~~~ 89 (141) +.|++|+.++|+||+++|... ++|.||||++++|||.++|++||++||||+++++.++++.....+... ..|.+ T Consensus 2 vra~aii~~~~~vLl~~~~~~----~~~~lPGG~ve~gE~~~~a~~RE~~EE~G~~v~~~~~l~~~e~~~~~~~~~~H~i 77 (125) T cd04689 2 LRARAIVRAGNKVLLARVIGQ----PHYFLPGGHVEPGETAENALRRELQEELGVAVSDGRFLGAIENQWHEKGVRTHEI 77 (125) T ss_pred EEEEEEEEECCEEEEEEECCC----CCEECCCCCCCCCCCHHHHHHHHHHHHHCCEEEECEEEEEEEEEEECCCCCEEEE T ss_conf 699999998999999998899----9589997985699899999999999987997894659999974677599651899 Q ss_pred EEEEEEEEECC----EECCC-HHHEEEECCHHHHCCC Q ss_conf 99999997548----37688-2331570277883248 Q gi|254780325|r 90 MPFFVCHCFEG----IPQSC-EGQQLQWVALDDLQNY 121 (141) Q Consensus 90 ~~~~~~~~~~~----~~~~~-E~~~~~Wi~~~el~~~ 121 (141) .++|.|+...+ .+... ++.+++|++++++.-+ T Consensus 78 ~~~f~~~~~~~~~~~~~~~d~d~~~~~WvpL~eL~ly 114 (125) T cd04689 78 NHIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125) T ss_pred EEEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHC T ss_conf 9999995255455689888886678999718995348 No 42 >cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and Probab=99.84 E-value=2.7e-20 Score=137.38 Aligned_cols=118 Identities=19% Similarity=0.246 Sum_probs=85.8 Q ss_pred EEEEEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCCCCC Q ss_conf 99999993598---69999917898889838225731017874889999888876265202442025566--52057886 Q gi|254780325|r 12 VVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPYEKF 86 (141) Q Consensus 12 vv~~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~~~~ 86 (141) ++++++++..+ +|||++|+ .|.|+||||++|+|||+.+||.||++|||||.+.......... +.+...+. T Consensus 4 saG~V~~r~~~~~~~vLLi~~~-----~g~W~~P~G~ie~gEs~~~aA~REv~EEtGl~~~~~~~~~~~~~~~~~~~~~~ 78 (130) T cd03428 4 SAGAIIYRRLNNEIEYLLLQAS-----YGHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLFIVLGFKETLNYQVRGK 78 (130) T ss_pred EEEEEEEEECCCCEEEEEEECC-----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCEEEEEECCCCCE T ss_conf 8899999864994899999918-----99689990504899599999999999987987078785174789998168978 Q ss_pred EEEEEEEEEEEECCE-EC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHH Q ss_conf 069999999975483-76-8823315702778832488973698999999 Q gi|254780325|r 87 HLLMPFFVCHCFEGI-PQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFL 134 (141) Q Consensus 87 ~~~~~~~~~~~~~~~-~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l 134 (141) ...+++|.+...++. +. ..|+.+++|+++++..++-.++.++.+|+.. T Consensus 79 ~~~v~~fl~~~~~~~~~~~~~E~~d~~W~~~~eA~~~l~~~~~r~il~~a 128 (130) T cd03428 79 LKTVTYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDKA 128 (130) T ss_pred EEEEEEEEEEEECCCCCCCCCCEEEEEEECHHHHHHHCCCHHHHHHHHHH T ss_conf 99999999998178678998215678998399999883997399999996 No 43 >PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional Probab=99.83 E-value=4.2e-20 Score=136.32 Aligned_cols=129 Identities=25% Similarity=0.367 Sum_probs=94.2 Q ss_pred CEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEE----EEEECCC Q ss_conf 649999999993598699999178988898382257310178748899998888762652024420255----6652057 Q gi|254780325|r 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPL----TFISHPY 83 (141) Q Consensus 8 ~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~----~~~~~~~ 83 (141) +++.+.+-+++..+|+|||.+|...|.. |+|.||||++++|||+.+||.||+.|||||++....+.+. ..+.++. T Consensus 199 pp~fvT~DaVVv~~ghVLLIrR~~~P~k-G~WALPGGfv~~~Etl~~aa~REL~EETgl~~~~~~l~~~l~~~~vfd~P~ 277 (340) T PRK05379 199 PPTFVTVDAVVVQSGHVLLVRRRAEPGK-GLWALPGGFVGQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPG 277 (340) T ss_pred CCEEEEEEEEEEECCEEEEEEECCCCCC-CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCC T ss_conf 8515653169998898999941899988-887589886999999899999988641268876203220012432478999 Q ss_pred --CCCEEEEEEEEEEEECCE-EC---CCHHHEEEECCHHHHCCC--CCCCCCHHHHHHHHHH Q ss_conf --886069999999975483-76---882331570277883248--8973698999999872 Q gi|254780325|r 84 --EKFHLLMPFFVCHCFEGI-PQ---SCEGQQLQWVALDDLQNY--SMLPADLSLISFLRKH 137 (141) Q Consensus 84 --~~~~~~~~~~~~~~~~~~-~~---~~E~~~~~Wi~~~el~~~--~~~~~~~~ii~~l~~~ 137 (141) +...++.+.|.+....+. |. ..+..+.+|++++++... .|+..+..||+.+..+ T Consensus 278 RdpRGrvvt~a~~~~l~~~~lp~v~agDDA~~A~W~pl~el~~~~~~~feDH~~Il~~fl~~ 339 (340) T PRK05379 278 RSLRGRTITHAFLFEFPAGELPAVKGGDDADKARWVPLAELAAMRDRMFEDHFQIITHFLGR 339 (340) T ss_pred CCCCCCEEEEEEEEEECCCCCCCCCCCCCHHHCEEEEHHHHHHCHHHHHCCHHHHHHHHHCC T ss_conf 99987789999999726776678789985565776539996547775644099999998508 No 44 >cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.83 E-value=4.3e-20 Score=136.23 Aligned_cols=108 Identities=29% Similarity=0.442 Sum_probs=83.3 Q ss_pred EEEEEEEECCCEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 9999999359869999917898-889838225-73101787488999988887626520244202556652057886069 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) ||.+.|+|.+|++||+||+.++ .+||+|+++ ||+++.|||. +||.||++||+|+.+....+.....+.+........ T Consensus 2 vv~v~v~n~~g~iLlqkRs~~K~~~Pg~W~~~~gg~v~~gE~~-eaa~RE~~EElGi~l~~~~~~~~~~~~~~~~~~~~~ 80 (127) T cd04693 2 VVHVCIFNSKGELLLQKRSPNKDGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFSELRPLFRYFFEAEGFDDY 80 (127) T ss_pred EEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCH-HHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEEEE T ss_conf 8999999399989999668998899972767887551289859-999999999717701766647889999269925899 Q ss_pred EEEEEEEEECCEE--CCCHHHEEEECCHHHHCCC Q ss_conf 9999999754837--6882331570277883248 Q gi|254780325|r 90 MPFFVCHCFEGIP--QSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 90 ~~~~~~~~~~~~~--~~~E~~~~~Wi~~~el~~~ 121 (141) . ++.+....+.+ +..|+++++|++++|+.++ T Consensus 81 ~-~~~~~~~~~~~~~~~~EV~d~~Wvs~eEl~~~ 113 (127) T cd04693 81 Y-LFYADVEIGKLILQKEEVDEVKFVSKDEIDGL 113 (127) T ss_pred E-EEEEEEECCCCCCCHHHEEEEEEECHHHHHHH T ss_conf 9-99970378987289378246899679999999 No 45 >cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer. Probab=99.83 E-value=1.4e-20 Score=139.00 Aligned_cols=121 Identities=27% Similarity=0.352 Sum_probs=88.3 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99999993598699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) +|.++|++.++++||+|+...+ +|+|.+|||++|+|||+++|+.||++||||+.++..++. .+..+++++. .+. T Consensus 2 ~Vi~~V~~~~~~iLL~r~~~~~--~g~~~~~aG~ve~GEs~e~a~~REv~EE~gv~v~~i~y~--~sqpwpfp~~--Lm~ 75 (131) T cd03429 2 AVIVLVIDGGDRILLARQPRFP--PGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNIRYV--GSQPWPFPSS--LML 75 (131) T ss_pred EEEEEEEECCCEEEEECCCCCC--CCCEECCEEEECCCCCHHHCEEEEEEEEECCEECCEEEE--EECCCCCCCE--EEE T ss_conf 7999999489889997056799--995946626643999979911898998717702216998--8758799886--899 Q ss_pred EEEEEEECCEECC--CHHHEEEECCHHHHCCC----CCCCCCHHHHHHHHHHC Q ss_conf 9999975483768--82331570277883248----89736989999998721 Q gi|254780325|r 92 FFVCHCFEGIPQS--CEGQQLQWVALDDLQNY----SMLPADLSLISFLRKHA 138 (141) Q Consensus 92 ~~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~----~~~~~~~~ii~~l~~~~ 138 (141) .|.|+..++++.. .|..+++|++++|+.+. ...|+...+-..|.++. T Consensus 76 ~f~a~~~~~e~~~~~~Ei~earWfs~del~~~~~~~~~~p~~~sIA~~li~~w 128 (131) T cd03429 76 GFTAEADSGEIVVDDDELEDARWFSRDEVRAAGEGLPELPPPGSIARQLIEAW 128 (131) T ss_pred EEEEEECCCCCCCCHHHEEEEEEECHHHHHHHHCCCCCCCCCCHHHHHHHHHH T ss_conf 99999769976699316216776769998663328877899210999999998 No 46 >cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.83 E-value=1.2e-19 Score=133.72 Aligned_cols=113 Identities=24% Similarity=0.439 Sum_probs=85.1 Q ss_pred EEEEEEEECCCEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 9999999359869999917898-889838225-73101787488999988887626520244202556652057886069 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) ++.+.|++.+|++||+||+.++ .+||+|+.. ||+++.|||.++||.||+.||+||+..... ....+.+........ T Consensus 2 a~~v~i~n~~G~iLlqkRs~~K~~~Pg~wd~s~~Ghv~~GE~~~~aa~REl~EElGI~~~~l~--~~~~~~~~~~~~~~~ 79 (126) T cd04697 2 ATYIFVFNSEGKLCVHKRTLTKDWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQLT--PLGLFYYDTDGNRVW 79 (126) T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCE--EEEEEEECCCCCCEE T ss_conf 799999929997999985799987996134576876779989999999999998689866756--758999878988489 Q ss_pred EEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC----CCCCCC Q ss_conf 999999975483--76882331570277883248----897369 Q gi|254780325|r 90 MPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY----SMLPAD 127 (141) Q Consensus 90 ~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~----~~~~~~ 127 (141) .++|.+.. ++. ++..|+++++|++++|+.++ +|.|.. T Consensus 80 ~~vf~~~~-d~~l~~~~eEV~~~~w~~~~El~~~~~~~~ftPd~ 122 (126) T cd04697 80 GKVFSCVY-DGPLKLQEEEVEEITWLSINEILQFKEGENITPDS 122 (126) T ss_pred EEEEEEEE-CCCCCCCHHHHHEEEECCHHHHHHHHHCCCCCCCH T ss_conf 99999999-99995996773117980399999898789979871 No 47 >cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally Probab=99.79 E-value=7e-19 Score=129.24 Aligned_cols=122 Identities=24% Similarity=0.414 Sum_probs=81.8 Q ss_pred EEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCCCC---- Q ss_conf 9999999359869999917898889838225731017874889999888876265202442025566--5205788---- Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPYEK---- 85 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~~~---- 85 (141) .|+++|+|++|+||+++|... +|.|+||||++|.|||+++||.||+.|||||.++..++++... +.|.++. T Consensus 5 ~Vg~vi~n~~~~vl~~~R~~~---~~~W~~P~G~i~~gE~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~Y~~P~~~~~ 81 (147) T cd03671 5 NVGVVLFNEDGKVFVGRRIDT---PGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIPDWLRYDLPPELKL 81 (147) T ss_pred EEEEEEEECCCEEEEEEECCC---CCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCCEEEECHHHHHH T ss_conf 789999928994999996899---88887980024799999999999999986966231355564027358607266543 Q ss_pred ------C-EEEEEEEEEEEE--CCEEC-----CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf ------6-069999999975--48376-----8823315702778832488973698999999872 Q gi|254780325|r 86 ------F-HLLMPFFVCHCF--EGIPQ-----SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH 137 (141) Q Consensus 86 ------~-~~~~~~~~~~~~--~~~~~-----~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~ 137 (141) + .-..+.|++... +.++. ..|.++++|++++++.+. .++.-+++.....++ T Consensus 82 ~~~~~~~~GQ~Qkwfl~~~~g~d~~I~l~~~~~~EF~~wrW~~~~e~~~~-vv~FKr~vY~~vl~e 146 (147) T cd03671 82 KIWGGRYRGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDL-IVPFKRPVYEAVLKE 146 (147) T ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEEECCHHHHHHH-CCHHHHHHHHHHHHH T ss_conf 01466457978799999987796507679999987456487888997675-525419999999975 No 48 >cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.78 E-value=1.2e-18 Score=127.84 Aligned_cols=107 Identities=23% Similarity=0.243 Sum_probs=75.3 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) |+++++..++++|++||+..+.. |+|.||||++|.|||+++||.||++||||+.+++..+..+. .+..++.++.+++ T Consensus 6 vv~~~~~~~d~vLl~rR~~~P~~-G~w~lPgGf~e~gEt~~~aa~RE~~EEtgl~v~~~~~~Lf~--v~s~p~~~~~~~~ 82 (118) T cd04674 6 VVVALLPVDDGLLVIRRGIEPGR-GKLALPGGFIELGETWQDAVARELLEETGVAVDPADIRLFD--VRSAPDGTLLVFG 82 (118) T ss_pred EEEEEEEECCEEEEEEECCCCCC-CCCCCCEEECCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEE--CCCCCCEEEEEEE T ss_conf 89999997999999985999888-85848753754999999999999999768511614017987--1546843799999 Q ss_pred EEEEEECCE-E---CCCHHHEEEECCHHHHCCCCCC Q ss_conf 999975483-7---6882331570277883248897 Q gi|254780325|r 93 FVCHCFEGI-P---QSCEGQQLQWVALDDLQNYSML 124 (141) Q Consensus 93 ~~~~~~~~~-~---~~~E~~~~~Wi~~~el~~~~~~ 124 (141) |.+.....+ + ...|..++++++..+ ++.|+ T Consensus 83 ~l~~~~~~dlp~f~pt~Es~e~~l~~~p~--eLAFP 116 (118) T cd04674 83 LLPERRAADLPPFEPTDETTERAVVTAPS--ELAFP 116 (118) T ss_pred EEHHHCCCCCCCCCCCCCEEEEEEECCCC--CCCCC T ss_conf 83100124368989883303369516744--44667 No 49 >PRK00714 dinucleoside polyphosphate hydrolase; Reviewed Probab=99.78 E-value=2e-18 Score=126.64 Aligned_cols=128 Identities=22% Similarity=0.264 Sum_probs=84.7 Q ss_pred CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEE--EECCC Q ss_conf 7864999999999359869999917898889838225731017874889999888876265202442025566--52057 Q gi|254780325|r 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF--ISHPY 83 (141) Q Consensus 6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~--~~~~~ 83 (141) .++.-..|+++|++++|+||+++|.. ++.|+||||++|.|||+++||.||+.||||+..+..++++... ..|++ T Consensus 4 ~~~YR~nVg~vi~n~~g~vl~~~R~~----~~~Wq~PqGgid~gE~~~~aa~REl~EE~Gi~~~~v~ii~~~~~wl~Yd~ 79 (156) T PRK00714 4 DDGYRPNVGIILLNRQGQVFWGRRIG----QHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETRDWLRYDL 79 (156) T ss_pred CCCCCCCEEEEEEECCCCEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCEEEEC T ss_conf 78888763999990999299999889----99767994500799899999999999985898200045762588389858 Q ss_pred CC--------CEE---EEEEEEEEEE--CCEECC-----CHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 88--------606---9999999975--483768-----8233157027788324889736989999998721 Q gi|254780325|r 84 EK--------FHL---LMPFFVCHCF--EGIPQS-----CEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA 138 (141) Q Consensus 84 ~~--------~~~---~~~~~~~~~~--~~~~~~-----~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~ 138 (141) +. ..+ ....|.++.. +.++.. .|.++++|++++++.+.- .|--+++.....+++ T Consensus 80 P~~~~~~~~~~~y~GQ~QkWfl~rf~g~d~~Inl~~~~~pEF~~wkW~~~~~~~~~v-v~FKr~vY~~vl~ef 151 (156) T PRK00714 80 PKRLVRRDWKPVCIGQKQKWFLLRLTGDDSEINLNTSHHPEFDAWRWVSYWYPLRQV-VPFKRDVYRRVLKEF 151 (156) T ss_pred CHHHHHHHCCCCCCCCEEEEEEEEEECCCCCEECCCCCCCCEEEEEECCHHHHHHHC-CCCCHHHHHHHHHHH T ss_conf 177642430587026368999999817985176689999862334758889977763-331899999999999 No 50 >cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.76 E-value=7.2e-18 Score=123.43 Aligned_cols=105 Identities=25% Similarity=0.393 Sum_probs=74.4 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCC-CCCCCEEEEEEEE--CCCC---CC Q ss_conf 9999993598699999178988898382257310178748899998888762652-0244202556652--0578---86 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV-VKPFSLVPLTFIS--HPYE---KF 86 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~-~~~~~~~~~~~~~--~~~~---~~ 86 (141) +|.+|+.++++|||+++... +.|.||||++|+|||+.+|++||++||||+. +.+.+.++...-. +.++ -. T Consensus 2 avraIi~~~~kiLL~~~~~~----~~~~lPGG~ve~gE~~~~al~RE~~EETG~~~i~~~~~~G~~~E~r~~~~~~~~~~ 77 (131) T cd04686 2 AVRAIILQGDKILLLYTKRY----GDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRVIEKFGTYTERRPWRKPDADIF 77 (131) T ss_pred CEEEEEEECCEEEEEEECCC----CCEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCEEEEEEEEEEECCCCCEE T ss_conf 48999998999999997699----96767877378998989999999998749610131311455999841005888779 Q ss_pred EEEEEEEEEEEECC--EECCC--H---HHEEEECCHHHHCCC Q ss_conf 06999999997548--37688--2---331570277883248 Q gi|254780325|r 87 HLLMPFFVCHCFEG--IPQSC--E---GQQLQWVALDDLQNY 121 (141) Q Consensus 87 ~~~~~~~~~~~~~~--~~~~~--E---~~~~~Wi~~~el~~~ 121 (141) +...++|.|+.... .+... | +....|+++++.-.. T Consensus 78 ~m~s~~Y~C~v~~~~g~~~le~~E~~~G~~pvWv~i~eAi~~ 119 (131) T cd04686 78 HMISYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEH 119 (131) T ss_pred EEEEEEEEEEECHHCCCCCCCCHHHHCCCCEEECCHHHHHHH T ss_conf 898789999851221898776034426972176789999998 No 51 >cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.76 E-value=6.8e-18 Score=123.56 Aligned_cols=111 Identities=27% Similarity=0.376 Sum_probs=81.4 Q ss_pred EEEEEEEEECC---CEEEEEEECCCC-CCCCCEECC-CCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 99999999359---869999917898-889838225-7310178748899998888762652024420255665205788 Q gi|254780325|r 11 LVVACAVFEPG---GKVLLSCRPKDK-SHGEFWEFP-GGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 11 ~vv~~~ii~~~---~~iLl~~R~~~~-~~~g~W~lP-GG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) .++-+-|++++ +++||+||+..+ .+||+|+.. ||+++.|||..+||+||++||+||.+...++..+..+.+.+.. T Consensus 3 ra~h~~v~~~~~~~g~illqkRs~~K~~~Pg~wd~s~~Ghv~~gEt~~~aa~REl~EElGl~~~~~~l~~lg~~~~~~~~ 82 (144) T cd04692 3 RTFHCWIITKDEGKGYVLLQKRSANKKTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDLIPLGTFKIEYDH 82 (144) T ss_pred EEEEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEEEEEC T ss_conf 38999999667995289999788998789983116657504579998999998999986887676881882189999744 Q ss_pred --C---EEEEEEEEEEEEC--C--EECCCHHHEEEECCHHHHCCC Q ss_conf --6---0699999999754--8--376882331570277883248 Q gi|254780325|r 86 --F---HLLMPFFVCHCFE--G--IPQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 86 --~---~~~~~~~~~~~~~--~--~~~~~E~~~~~Wi~~~el~~~ 121 (141) . +-..++|.+.... + .++..|+++++|++++++.++ T Consensus 83 ~~~~~d~e~~~vy~~~~~~~~~~~~~~~~EV~~~~wv~~~el~~~ 127 (144) T cd04692 83 IGKLIDREFHHVYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAEL 127 (144) T ss_pred CCCCEEEEEEEEEEEEECCCCCCCCCCHHHHHEEEEECHHHHHHH T ss_conf 998172089999999968984567899788105999879999999 No 52 >cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate Probab=99.75 E-value=2.2e-17 Score=120.60 Aligned_cols=115 Identities=25% Similarity=0.329 Sum_probs=80.8 Q ss_pred EEEEEEEECCCEEEEEEECCC-CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEEECC--CCCCE Q ss_conf 999999935986999991789-8889838225731017874889999888876265202-4420255665205--78860 Q gi|254780325|r 12 VVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK-PFSLVPLTFISHP--YEKFH 87 (141) Q Consensus 12 vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~-~~~~~~~~~~~~~--~~~~~ 87 (141) .+.++|++.+|+|||++|... ...+++|.+|||++|+|||+.+||.||+.|||||.+. ....+......+. ....+ T Consensus 2 aarvvl~d~~grvLL~r~~~~~~~~~~~W~~pgG~~~~gE~~~~a~~RE~~EE~G~~~~~~~~~v~~r~~~f~~~g~~~~ 81 (133) T cd04685 2 AARVVLLDPDDRVLLLRGDDPDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLGPPVWRRDAAFTFLGVDGR 81 (133) T ss_pred EEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCEECCCCCCEEEEEEEEECCCCCCC T ss_conf 17999986999999997447899999918599874889869899999999987597800244637999678703787100 Q ss_pred EEEEEEEEEEECCEECCC-----H---HHEEEECCHHHHCCC--CCCCC Q ss_conf 699999999754837688-----2---331570277883248--89736 Q gi|254780325|r 88 LLMPFFVCHCFEGIPQSC-----E---GQQLQWVALDDLQNY--SMLPA 126 (141) Q Consensus 88 ~~~~~~~~~~~~~~~~~~-----E---~~~~~Wi~~~el~~~--~~~~~ 126 (141) -.-.||.+...+.++... | ..+.+|+++++|... .++|. T Consensus 82 ~~E~fflvr~~~~e~~~~~~t~~E~~~i~e~RWws~~EL~~t~E~v~P~ 130 (133) T cd04685 82 QEERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAATPETVYPP 130 (133) T ss_pred CEEEEEEEEECCCEECCCCCCHHHHHHCCCCCCCCHHHHHHCCCEECCC T ss_conf 0689999994686035766766664010255258899993279803686 No 53 >cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm Probab=99.74 E-value=4.7e-17 Score=118.72 Aligned_cols=111 Identities=26% Similarity=0.386 Sum_probs=82.2 Q ss_pred EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEE--CCCC Q ss_conf 4999999999359869999917898-88983822-573101787488999988887626520244202556652--0578 Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFIS--HPYE 84 (141) Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~--~~~~ 84 (141) .+.++-+.|++.+|++||+||+..+ .+||+|+. .||++.+|||..+||.||+.||+||.+...... ...+. ..+. T Consensus 29 ~Hrav~v~v~n~~g~lllqkRs~~K~~~Pg~wd~s~~Gh~~~GE~~~~aa~Rel~EElGi~~~~~~~~-~~~~~y~~~~~ 107 (165) T cd02885 29 LHRAFSVFLFNSKGRLLLQRRALSKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLELV-LPRFRYRAPDD 107 (165) T ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEEECCCC T ss_conf 48999999990899799998579886899707355434676997589999998888619985432046-66899932248 Q ss_pred CC---EEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC Q ss_conf 86---069999999975483--76882331570277883248 Q gi|254780325|r 85 KF---HLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 85 ~~---~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~ 121 (141) +. +-..++|.+.. ++. +++.|+++++|++++++.++ T Consensus 108 ~~~~e~E~~~vy~~~~-d~~~~~~~~EV~~~~w~~~~el~~~ 148 (165) T cd02885 108 GGLVEHEIDHVFFARA-DVTLIPNPDEVSEYRWVSLEDLKEL 148 (165) T ss_pred CCCCCEEEEEEEEEEE-CCCCCCCHHHHEEEEEECHHHHHHH T ss_conf 9874237999999965-8987699579238899789999999 No 54 >COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair] Probab=99.69 E-value=4.2e-17 Score=119.03 Aligned_cols=104 Identities=27% Similarity=0.394 Sum_probs=81.0 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) ++.+++.+++++||.++++.. +|+|..-.|+||+|||+|+|+.||++||+||.++. +.+..+..+++++. .+.- T Consensus 146 ~vIv~v~~~~~ilLa~~~~h~--~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~--vrY~~SQPWPfP~S--LMig 219 (279) T COG2816 146 CVIVAVIRGDEILLARHPRHF--PGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKN--VRYVGSQPWPFPHS--LMLG 219 (279) T ss_pred EEEEEEECCCCEEECCCCCCC--CCCEEEEEECCCCCCCHHHHHHHHHHHHHCEEEEE--EEEEECCCCCCCHH--HHHH T ss_conf 699999617720006898877--85300013304578549999999988864717765--66873268999534--6524 Q ss_pred EEEEEECCEECCC--HHHEEEECCHHH-HCCCC Q ss_conf 9999754837688--233157027788-32488 Q gi|254780325|r 93 FVCHCFEGIPQSC--EGQQLQWVALDD-LQNYS 122 (141) Q Consensus 93 ~~~~~~~~~~~~~--E~~~~~Wi~~~e-l~~~~ 122 (141) |.+...+++++.+ |..+.+|++.+| ++.++ T Consensus 220 f~aey~sgeI~~d~~Eleda~WFs~~evl~~L~ 252 (279) T COG2816 220 FMAEYDSGEITPDEGELEDARWFSRDEVLPALP 252 (279) T ss_pred HEEEECCCCCCCCCCHHHHCCCCCHHHHHHHCC T ss_conf 025542666467822133411347777776268 No 55 >PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional Probab=99.69 E-value=7.7e-16 Score=111.71 Aligned_cols=112 Identities=26% Similarity=0.416 Sum_probs=82.6 Q ss_pred EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE-EEEEEECCCCC Q ss_conf 4999999999359869999917898-88983822-573101787488999988887626520244202-55665205788 Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLV-PLTFISHPYEK 85 (141) Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~-~~~~~~~~~~~ 85 (141) .+.++.+.+++.+|++||+||+..+ .+||+|+. -+|++.+||+.++||.||+.||+||.++....+ ....+...+++ T Consensus 33 lHRafsv~l~~~~g~lllq~Rs~~K~~~pg~w~~s~~gH~~~gE~~~~aa~R~l~EElGi~~~~l~~~~~~f~Y~a~~~~ 112 (184) T PRK03759 33 LHLAFSCYLFDADGRLLVTRRALSKKTWPGVWTNSCCGHPQPGESLEDAIIRRCREELGVEITDLTLVLPDFRYRATDPN 112 (184) T ss_pred EEEEEEEEEECCCCCEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEECCCCC T ss_conf 38899999995999699997158973799940035446789998999999999999869883444055003899723899 Q ss_pred C---EEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCCC Q ss_conf 6---069999999975483--76882331570277883248 Q gi|254780325|r 86 F---HLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 86 ~---~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~~ 121 (141) . +-..++|.+.. ++. |.+.|+++++|+++++|... T Consensus 113 g~~E~E~~~Vf~~~~-d~~~~pnp~EV~e~~Wv~~~eL~~~ 152 (184) T PRK03759 113 GIVENEVCPVFAARA-TSALQPNPDEVMDYQWVDPADLLRA 152 (184) T ss_pred CCCEEEEEEEEEEEE-CCCCCCCHHHHEEEEEECHHHHHHH T ss_conf 862257999999984-8989899689134689869999999 No 56 >cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). Probab=99.69 E-value=1.5e-16 Score=115.73 Aligned_cols=104 Identities=22% Similarity=0.379 Sum_probs=69.7 Q ss_pred EEEEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 99999999359-86999991789888983822573101787488999988887626520244202556652057886069 Q gi|254780325|r 11 LVVACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 11 ~vv~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) .+.+++|++.+ +++||+++.. ++.|+||||+++.||++.+||+||+.||||+++.+.- ..-...........+ T Consensus 2 Pv~GaIiln~~~~kvLLVk~~~----~~~W~fPkGki~~~E~~~~~AiREv~EEtG~Dv~~~i-~~~~~Ie~~~~~q~~- 75 (145) T cd03672 2 PVYGAIILNEDLDKVLLVKGWK----SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYI-DKDDYIELIIRGQNV- 75 (145) T ss_pred CEEEEEEEECCCCEEEEEEECC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHC-CCCEEEEEEECCEEE- T ss_conf 7259999918999899999438----9958599641689979899998887773275754215-846069999789089- Q ss_pred EEEEEEEEEC----CEECC-CHHHEEEECCHHHHCCC Q ss_conf 9999999754----83768-82331570277883248 Q gi|254780325|r 90 MPFFVCHCFE----GIPQS-CEGQQLQWVALDDLQNY 121 (141) Q Consensus 90 ~~~~~~~~~~----~~~~~-~E~~~~~Wi~~~el~~~ 121 (141) .+|.+.... ..|+. .|..+++|++.++|+.. T Consensus 76 -rlyiv~gVp~dt~F~p~TRkEI~~I~W~~i~~Lp~~ 111 (145) T cd03672 76 -KLYIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTK 111 (145) T ss_pred -EEEEECCCCCCCCCCCCCCCCEEEEEEEEHHHHHHH T ss_conf -999982888887517887232765788898884444 No 57 >PRK00241 nudC NADH pyrophosphatase; Reviewed Probab=99.68 E-value=1e-16 Score=116.78 Aligned_cols=104 Identities=26% Similarity=0.372 Sum_probs=81.3 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) ++.+++.+++++||.+.+.. .+|+|....|++|+|||.++|+.||++||+|+.++..+++ .+..++|++. .+.- T Consensus 135 aVIvlV~~gd~iLLar~~~~--~~~~yS~lAGFvE~GEslE~aV~REV~EE~Gi~V~~i~Y~--~SQpWPFP~s--LMlG 208 (257) T PRK00241 135 CIIVAVRRGDEILLARHPRH--RNGVYTVLAGFVEVGESLEQCVAREVMEEVGIKVKNLRYV--GSQPWPFPRS--LMLG 208 (257) T ss_pred EEEEEEEECCEEEECCCCCC--CCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCEECCEEEE--EECCCCCCHH--HHEE T ss_conf 69999972998876147889--9985230100365785899975351023467287540175--4158889741--1210 Q ss_pred EEEEEECCEECC--CHHHEEEECCHHHHCCCC Q ss_conf 999975483768--823315702778832488 Q gi|254780325|r 93 FVCHCFEGIPQS--CEGQQLQWVALDDLQNYS 122 (141) Q Consensus 93 ~~~~~~~~~~~~--~E~~~~~Wi~~~el~~~~ 122 (141) |.++..++++.. .|..+.+|++.++++.++ T Consensus 209 f~A~~~~~ei~~d~~Ei~~A~Wf~~delp~lP 240 (257) T PRK00241 209 FHADYDSGEIVFDPKEIADAQWFTYDELPLLP 240 (257) T ss_pred EEEEECCCCCCCCHHHEEEEEEECHHHHHHCC T ss_conf 69995688632583330224745689842069 No 58 >cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules. Probab=99.66 E-value=6.8e-16 Score=112.04 Aligned_cols=106 Identities=25% Similarity=0.224 Sum_probs=78.3 Q ss_pred EEEEEEECCC--EEEEEEECCCC-CCCCCEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEE Q ss_conf 9999993598--69999917898-8898382257310178-748899998888762652024420255665205788606 Q gi|254780325|r 13 VACAVFEPGG--KVLLSCRPKDK-SHGEFWEFPGGKIEDG-ETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL 88 (141) Q Consensus 13 v~~~ii~~~~--~iLl~~R~~~~-~~~g~W~lPGG~ve~g-Es~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~ 88 (141) |...++..++ ++|+.+|+.+. .++|.++||||++|++ ||+.+||.||.+||+|+..+..++++........ ..+ T Consensus 5 Vli~l~~~~~~~~ill~kRs~~l~~h~GqisfPGG~~e~~D~~~~~tAlREt~EEiGl~~~~~~~lg~L~~~~t~--s~~ 82 (157) T cd03426 5 VLVLLVEREGELRVLLTKRASHLRSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSVEVLGRLPPYYTR--SGF 82 (157) T ss_pred EEEEEEECCCCEEEEEEEECCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCC--CCC T ss_conf 999999879967999998267667789848379960276653389999999999868991133898634871325--984 Q ss_pred EEEEEEEEEEC---CEECCCHHHEEEECCHHHHCC Q ss_conf 99999999754---837688233157027788324 Q gi|254780325|r 89 LMPFFVCHCFE---GIPQSCEGQQLQWVALDDLQN 120 (141) Q Consensus 89 ~~~~~~~~~~~---~~~~~~E~~~~~Wi~~~el~~ 120 (141) .++.|.+...+ ..+...|++++.|++++++.+ T Consensus 83 ~V~PfV~~~~~~~~~~~~~~EV~~vf~vPL~~ll~ 117 (157) T cd03426 83 VVTPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLD 117 (157) T ss_pred EEEEEEEEECCCCCCCCCHHHHHHHHHCCHHHHHC T ss_conf 89999999479876579848978881405999739 No 59 >cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s Probab=99.65 E-value=1.8e-15 Score=109.53 Aligned_cols=94 Identities=23% Similarity=0.243 Sum_probs=65.8 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEE Q ss_conf 99999359869999917898889838225731017874889999888876265202442025566520578860699999 Q gi|254780325|r 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFF 93 (141) Q Consensus 14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141) |.+|...++++|++++.. +-|+||||++|+|||+++||+||+.||||+.+....+++...+...... ..-.+| T Consensus 3 V~vi~~~~~~~Ll~~~~~-----rgw~~PGG~~e~gEt~~~aa~RE~~EEtG~~~~~l~~ig~Y~V~~~~~~--~~k~vY 75 (118) T cd04665 3 VLVICFYDDGLLLVRHKD-----RGWEFPGGHVEPGETIEEAARREVWEETGAELGSLTLVGYYQVDLFESG--FETLVY 75 (118) T ss_pred EEEEEEECCEEEEEEECC-----CCEECCCCCCCCCCCHHHHHHHHHHHHHCEEEEEEEEEEEEEECCCCCC--EEEEEE T ss_conf 999997899999999289-----9787983041799999999999887732918410689999997689983--688899 Q ss_pred EEEEECCEE--CCCHHHEEEECC Q ss_conf 999754837--688233157027 Q gi|254780325|r 94 VCHCFEGIP--QSCEGQQLQWVA 114 (141) Q Consensus 94 ~~~~~~~~~--~~~E~~~~~Wi~ 114 (141) .+.....+- .-.|.....|++ T Consensus 76 ~a~i~~~~~~~~y~Et~gp~l~~ 98 (118) T cd04665 76 PAVSAQLEEKASYLETDGPVLFK 98 (118) T ss_pred EEEEEEEEECCCCCCCCCCEECC T ss_conf 99964675037743437768716 No 60 >cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem Probab=99.63 E-value=2.8e-15 Score=108.50 Aligned_cols=107 Identities=26% Similarity=0.284 Sum_probs=76.4 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) |+++.++.+++++|.+..+.+..+-.|+||+|.+|+|||+++||+||++||||+.++.... +..+...-+-.+-.+++ T Consensus 5 V~il~~~~~~~i~lv~QyR~~~~~~~~E~PaG~id~gE~~~~aA~REL~EETG~~~~~~~~--l~~~~~~pg~~~~~~~~ 82 (137) T cd03424 5 VAVLPYDDDGKVVLVRQYRPPVGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDLEK--LGSFYPSPGFSDERIHL 82 (137) T ss_pred EEEEEECCCCEEEEEEEEECCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEE--CCCCCCCCCCCCCEEEE T ss_conf 9999986999899998144289983898155468899799999999974120651386789--33625888233717999 Q ss_pred EEEEEECCE----ECCCHHHEEEECCHHHHCCC Q ss_conf 999975483----76882331570277883248 Q gi|254780325|r 93 FVCHCFEGI----PQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 93 ~~~~~~~~~----~~~~E~~~~~Wi~~~el~~~ 121 (141) |.++..... ....|..+..|++.+++.++ T Consensus 83 ~~a~~~~~~~~~~~d~~E~i~v~~~~~~e~~~~ 115 (137) T cd03424 83 FLAEDLSPGEEGLLDEGEDIEVVLVPLDEALEL 115 (137) T ss_pred EEEEECCCCCCCCCCCCCCEEEEEECHHHHHHH T ss_conf 999944045567888775268999669999999 No 61 >PRK10707 hypothetical protein; Provisional Probab=99.61 E-value=1.2e-14 Score=104.79 Aligned_cols=101 Identities=20% Similarity=0.165 Sum_probs=75.2 Q ss_pred ECCCEEEEEEECCCC-CCCCCEECCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEE Q ss_conf 359869999917898-88983822573101787-4889999888876265202442025566520578860699999999 Q gi|254780325|r 19 EPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGE-TPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCH 96 (141) Q Consensus 19 ~~~~~iLl~~R~~~~-~~~g~W~lPGG~ve~gE-s~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (141) +.+..+|+.+|+.+- .++|..+||||++|+++ |+.+||.||.+||+||..+..++++...-....+++ .+..|.+. T Consensus 41 ~~~~~iLlt~Rs~~L~~H~GqIsFPGGk~e~~D~~~~~TALREt~EEiGl~~~~v~vlG~L~~~~t~sg~--~V~P~Vg~ 118 (190) T PRK10707 41 RPQPGLLLTQRAIHLRKHAGQVAFPGGAVDDTDASLIAAALREAEEEVAIPPSAVEVIGVLPPVDSVTGY--QVTPVVGI 118 (190) T ss_pred CCCCEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCEECCCCC--EEEEEEEE T ss_conf 8995899997565356799988489967688888889999998889868994325898634735667898--89999999 Q ss_pred EEC---CEECCCHHHEEEECCHHHHCCC Q ss_conf 754---8376882331570277883248 Q gi|254780325|r 97 CFE---GIPQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 97 ~~~---~~~~~~E~~~~~Wi~~~el~~~ 121 (141) ..+ ..+...|++++.|++++++.+. T Consensus 119 i~~~~~~~~~~~EV~~vf~vPL~~ll~~ 146 (190) T PRK10707 119 IPPNLPYRASEDEVAAVFEMPLAEALHL 146 (190) T ss_pred ECCCCCCCCCHHHHHHHEECCHHHHHCC T ss_conf 7788777898488472355419996284 No 62 >PRK11762 nudE ADP-ribose diphosphatase NudE; Provisional Probab=99.59 E-value=1.3e-14 Score=104.72 Aligned_cols=104 Identities=23% Similarity=0.242 Sum_probs=73.1 Q ss_pred EEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEE Q ss_conf 99935986999991789888983822573101787488999988887626520244202556652057886069999999 Q gi|254780325|r 16 AVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVC 95 (141) Q Consensus 16 ~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141) +-+.++++|+|+++...+...-.|+||+|.+|+||++.+||+||+.||||+..+....++.......+. +-.+++|.+ T Consensus 53 vpi~~~~~vvLVrQyR~~~~~~~lEiPaG~id~gE~p~~aA~REL~EETGy~a~~~~~l~~~~~spg~~--~e~~~~flA 130 (185) T PRK11762 53 VPILDDDTLLLIREYAAGTESYELGFPKGLIDPGETPEEAANRELKEEVGFGARQLTFLKELSLAPSYF--SSKMNIVLA 130 (185) T ss_pred EEECCCCEEEEEECCCCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCC--CCEEEEEEE T ss_conf 997599979999933688888799824305899969899999998897697747689975998377311--532999998 Q ss_pred EEECCE-EC--CCHHHEEEECCHHHHCCC Q ss_conf 975483-76--882331570277883248 Q gi|254780325|r 96 HCFEGI-PQ--SCEGQQLQWVALDDLQNY 121 (141) Q Consensus 96 ~~~~~~-~~--~~E~~~~~Wi~~~el~~~ 121 (141) +..... .. ..|.-+..+++++++.++ T Consensus 131 ~~l~~~~~~~De~E~iev~~~~~~e~~~m 159 (185) T PRK11762 131 QDLYPERLEGDEPEPLEVVRWPLADLDEL 159 (185) T ss_pred CCCCCCCCCCCCCCCEEEEEECHHHHHHH T ss_conf 58605667999984149999769999999 No 63 >cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to Probab=99.57 E-value=3.2e-14 Score=102.37 Aligned_cols=114 Identities=26% Similarity=0.513 Sum_probs=93.1 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEE Q ss_conf 99999935986999991789888983822573101787488999988887626520244202556652057886069999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPF 92 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (141) .+.++++++|+|||.||+.++-++|+|+||++..+.++..+++..++...+.+... ....++.|.|+|+++.+.+ T Consensus 5 ~~~~ii~~~~~iLl~kRp~~Gll~gLwefP~~e~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~H~fSH~~l~~~~ 79 (118) T cd03431 5 IAVVVIRNDGRVLLEKRPEKGLLAGLWEFPSVEWEEEADGEEALLSALKKALRLSL-----EPLGTVKHTFTHFRLTLHV 79 (118) T ss_pred EEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-----CCCCEEEEEECCEEEEEEE T ss_conf 99999977999999988999845653007866556564627999876665530122-----1044041342417999999 Q ss_pred EEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHH Q ss_conf 999975483768823315702778832488973698999999 Q gi|254780325|r 93 FVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFL 134 (141) Q Consensus 93 ~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l 134 (141) |.|+....... ..+++|++++++.+++|+.+.+++++.| T Consensus 80 ~~~~~~~~~~~---~~~~~Wv~~~~l~~~~~p~~~~Kil~~l 118 (118) T cd03431 80 YLARLEGDLLA---PDEGRWVPLEELDEYALPTVMRKILELL 118 (118) T ss_pred EEEEECCCCCC---CCCCEEEEHHHCCCCCCCHHHHHHHHHC T ss_conf 99996379878---9888997678854068987999999759 No 64 >TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD; InterPro: IPR014078 The proteins in this entry belong to the nudix family and share some sequence identity with Escherichia coli MutT but appear not to be functionally interchangeable with it. The functional assignment of the proteins in this family is contentious. Reference challenges the findings of reference , both in interpretation and in enzyme assay results.. Probab=99.52 E-value=3e-14 Score=102.51 Aligned_cols=86 Identities=26% Similarity=0.340 Sum_probs=56.3 Q ss_pred CCCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 78649999999993598699999178988898382257310178748899998888762652024420255665205788 Q gi|254780325|r 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 6 mk~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) |..+-+|= +|-+-+|+.|+..-. ..|+ +|||||+|.|||+++||+|||+||||-.+....++ ..+.-...+ T Consensus 22 ~~~p~HVl--vip~~~~qWLlT~H~----~RGl-EFPGGKvE~GEt~~eAA~REv~EETGA~v~~l~Y~--gQY~Ve~~~ 92 (158) T TIGR02705 22 SPNPNHVL--VIPRYKDQWLLTEHK----RRGL-EFPGGKVEEGETSKEAAIREVYEETGAIVKELHYI--GQYEVEGED 92 (158) T ss_pred CCCCCCEE--EEEEECCEEEECCCC----CCCC-CCCCCEECCCCCHHHHHHEECCCCCCEEEEEEEEE--EEEEEECCC T ss_conf 88969568--975568933440358----7870-47888007998846765100100358075468888--767875899 Q ss_pred -CEEEEEEEEEEEECC Q ss_conf -606999999997548 Q gi|254780325|r 86 -FHLLMPFFVCHCFEG 100 (141) Q Consensus 86 -~~~~~~~~~~~~~~~ 100 (141) ..++=-+|.+++.+- T Consensus 93 ~~~f~K~vYfa~V~~l 108 (158) T TIGR02705 93 DTDFVKDVYFAEVSAL 108 (158) T ss_pred CCEEEEEEEEEEEEEE T ss_conf 9665777668899873 No 65 >KOG3084 consensus Probab=99.50 E-value=4.2e-15 Score=107.47 Aligned_cols=106 Identities=27% Similarity=0.360 Sum_probs=74.1 Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECC-CCCCEE Q ss_conf 9999999993598699999178988898382257310178748899998888762652024420255665205-788606 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHP-YEKFHL 88 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~-~~~~~~ 88 (141) -.+|..+|++.+|+.+++.|.+. +-+|+|..+.|++|+|||.++|++||++||+|++++...+. .+..++ ++- .+ T Consensus 187 dPvVIm~li~~d~~~~LL~R~~r-~~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~~~--asQPWP~~p~-SL 262 (345) T KOG3084 187 DPVVIMLLIDHDGKHALLGRQKR-YPPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVISYV--ASQPWPLMPQ-SL 262 (345) T ss_pred CCEEEEEEECCCCCEEEEECCCC-CCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCEEEEEEEE--ECCCCCCCCH-HH T ss_conf 98699999768887741001467-99960100000277550299999998899749541357665--0489899966-89 Q ss_pred EEEEEEEEEECCEECC--C-HHHEEEECCHHHHC Q ss_conf 9999999975483768--8-23315702778832 Q gi|254780325|r 89 LMPFFVCHCFEGIPQS--C-EGQQLQWVALDDLQ 119 (141) Q Consensus 89 ~~~~~~~~~~~~~~~~--~-E~~~~~Wi~~~el~ 119 (141) .+.++......+.+.. . |-++.+|++.+++. T Consensus 263 MIgc~ala~~~~~I~vd~dlEleDaqwF~r~ev~ 296 (345) T KOG3084 263 MIGCLALAKLNGKISVDKDLELEDAQWFDREEVK 296 (345) T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHH T ss_conf 9999999861785123753454423442499999 No 66 >COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only] Probab=99.45 E-value=3.3e-12 Score=90.80 Aligned_cols=110 Identities=37% Similarity=0.468 Sum_probs=68.6 Q ss_pred EEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHH-HHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC---- Q ss_conf 999999359-869999917898889838225731017874889-99988887626520244202556652057886---- Q gi|254780325|r 13 VACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEE-ALTRELFEELAIVVKPFSLVPLTFISHPYEKF---- 86 (141) Q Consensus 13 v~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~-a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~---- 86 (141) +.+.+.... +++|+.+|.... +.|.||||++++||++.+ ||+||+.||||+.+..........+....... T Consensus 14 ~~~~~~~~~~~~vl~~~~~~~~---~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~ 90 (161) T COG0494 14 VAVLVGRDGPGEVLLAQRRDDG---GLWELPGGKVEPGEELPEEAAARELEEETGLRVKDERLELLGEFPPSPGDGSSVG 90 (161) T ss_pred EEEEEEECCCCEEEEEEEECCC---CEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCCCCC T ss_conf 9999961888799999984799---9599088855899987899999999998788131520289999966654332112 Q ss_pred -EEEEEEEEEEE---ECCEEC-----CCHHHEEEECCHHHHCCCCCCC Q ss_conf -06999999997---548376-----8823315702778832488973 Q gi|254780325|r 87 -HLLMPFFVCHC---FEGIPQ-----SCEGQQLQWVALDDLQNYSMLP 125 (141) Q Consensus 87 -~~~~~~~~~~~---~~~~~~-----~~E~~~~~Wi~~~el~~~~~~~ 125 (141) .....++.+.. ....+. ..+..++.|++.+++....... T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 138 (161) T COG0494 91 GREHRVFFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALVLAE 138 (161) T ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEECHHHHHHHHCCC T ss_conf 157999999961344343334666654210104765667866553022 No 67 >PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional Probab=99.43 E-value=1.6e-12 Score=92.59 Aligned_cols=107 Identities=18% Similarity=0.162 Sum_probs=67.2 Q ss_pred EEEEEEE-CCCEEEEEEECCCC-----CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC Q ss_conf 9999993-59869999917898-----88983822573101787488999988887626520244202556652057886 Q gi|254780325|r 13 VACAVFE-PGGKVLLSCRPKDK-----SHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF 86 (141) Q Consensus 13 v~~~ii~-~~~~iLl~~R~~~~-----~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~ 86 (141) |+++.++ ..++|+|.+.-.-+ ..|-+|++|+|.+|+||++++||+||+.||||+.+.. +.++.++...-+.. T Consensus 52 v~vL~yDp~~d~vvLveQfR~~~~~~~~~~wllEipAG~id~gE~p~~~A~REl~EEtG~~~~~--l~~l~~~~~SPG~s 129 (202) T PRK10729 52 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGR--TKPVLSYLASPGGT 129 (202) T ss_pred EEEEEEECCCCEEEEEEECCCHHCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCC--EEEEEEEECCCCCC T ss_conf 9999980778969999823512203799963999402033899798999999988875958052--89977881689753 Q ss_pred EEEEEEEEEEEECCEEC-----CCHH--HEEEECCHHHHCCC Q ss_conf 06999999997548376-----8823--31570277883248 Q gi|254780325|r 87 HLLMPFFVCHCFEGIPQ-----SCEG--QQLQWVALDDLQNY 121 (141) Q Consensus 87 ~~~~~~~~~~~~~~~~~-----~~E~--~~~~Wi~~~el~~~ 121 (141) +-.+++|.+........ ..|+ -...|++++++.++ T Consensus 130 ~E~i~lf~a~~d~~~~~~~~gl~dE~EdI~v~~v~~~ea~~~ 171 (202) T PRK10729 130 SERSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQW 171 (202) T ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECHHHHHHH T ss_conf 315999999802533456788899996579999679999999 No 68 >cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s Probab=99.42 E-value=3.2e-12 Score=90.87 Aligned_cols=104 Identities=20% Similarity=0.240 Sum_probs=66.8 Q ss_pred EEEEEEECC-C--EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEEEEECCCC--CC Q ss_conf 999999359-8--69999917898889838225731017874889999888876265202442-025566520578--86 Q gi|254780325|r 13 VACAVFEPG-G--KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS-LVPLTFISHPYE--KF 86 (141) Q Consensus 13 v~~~ii~~~-~--~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~-~~~~~~~~~~~~--~~ 86 (141) ++++.++.+ | +|||+.+.+. |.|.||+|.++.|||+.+||.||+.||+|+...... .++...+..... .. T Consensus 3 agal~~r~~~g~~eVLLItsr~~----~rWilPKG~~e~~es~~~aA~REa~EEAGv~g~i~~~~lG~~~y~k~~~~~~~ 78 (122) T cd04666 3 AGAIPYRETGGEVEVLLVTSRRT----GRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIGKRPLGRFEYRKRSKNRPP 78 (122) T ss_pred EEEEEEEECCCCEEEEEEEECCC----CEEECCCCCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCEEEEEEECCCCCCC T ss_conf 99999997399089999992699----94998875367998999998888887429488886758889999982799853 Q ss_pred EEEEEEEEEEEECCEECCCH--HHEEEECCHHHHCC Q ss_conf 06999999997548376882--33157027788324 Q gi|254780325|r 87 HLLMPFFVCHCFEGIPQSCE--GQQLQWVALDDLQN 120 (141) Q Consensus 87 ~~~~~~~~~~~~~~~~~~~E--~~~~~Wi~~~el~~ 120 (141) ...+.+|...+......-.| ...-+|+++++... T Consensus 79 ~~~V~~f~~~V~~~~~~wpE~~~R~R~W~s~~eA~~ 114 (122) T cd04666 79 RCEVAVFPLEVTEELDEWPEMHQRKRKWFSPEEAAL 114 (122) T ss_pred CEEEEEEEEEEEEECCCCCCCCCEEEEECCHHHHHH T ss_conf 199999999998511259975867999938999998 No 69 >cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe Probab=99.24 E-value=3.1e-10 Score=79.36 Aligned_cols=116 Identities=22% Similarity=0.327 Sum_probs=79.4 Q ss_pred EEEEEEECCCC-CCCCCEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-EEEEEEEEC--CCCC--C-EEEEEEEE Q ss_conf 69999917898-8898382-25731017874889999888876265202442-025566520--5788--6-06999999 Q gi|254780325|r 23 KVLLSCRPKDK-SHGEFWE-FPGGKIEDGETPEEALTRELFEELAIVVKPFS-LVPLTFISH--PYEK--F-HLLMPFFV 94 (141) Q Consensus 23 ~iLl~~R~~~~-~~~g~W~-lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~-~~~~~~~~~--~~~~--~-~~~~~~~~ 94 (141) ++-++||+..+ .+||+|+ ..+|.+..|||+.+|++||+.||+||..+..+ ..+...+++ .... . .-+.++|. T Consensus 49 ~lWv~rRs~~K~~~Pg~~D~~vaGg~~~g~~~~~~~~rE~~EEagi~~~l~~~~~~~G~isy~~~~~~~gl~~e~~~vYd 128 (180) T cd03676 49 RIWIPRRSPTKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQLKPVGVVSYLREGEAGGLQPEVEYVYD 128 (180) T ss_pred EEEEECCCCCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCEECEEEEEEEECCCCCCCCCEEEEEE T ss_conf 99986268987789975301111366799899999999999881999899831551117999987687773553899999 Q ss_pred EEEECC-EECCC--HHHEEEECCHHHHCC----CCCCC-CCHHHHHHHHHHC Q ss_conf 997548-37688--233157027788324----88973-6989999998721 Q gi|254780325|r 95 CHCFEG-IPQSC--EGQQLQWVALDDLQN----YSMLP-ADLSLISFLRKHA 138 (141) Q Consensus 95 ~~~~~~-~~~~~--E~~~~~Wi~~~el~~----~~~~~-~~~~ii~~l~~~~ 138 (141) ...... .|++. |++++.|++.+++.+ -+|-| ..--+++.|.+|+ T Consensus 129 l~lp~d~~P~~~DGEVe~F~l~~v~ev~~~l~~g~Fkpn~alviiDfliRhG 180 (180) T cd03676 129 LELPPDFIPAPQDGEVESFRLLTIDEVLRALKEGEFKPNCALVTLDFLIRHG 180 (180) T ss_pred EEECCCCEECCCCCCEEEEEEECHHHHHHHHHCCCCCCCCHHHHHHHHHHCC T ss_conf 9828996057999866369996599999999739976520889776684069 No 70 >KOG2839 consensus Probab=99.23 E-value=2.4e-11 Score=85.85 Aligned_cols=108 Identities=26% Similarity=0.301 Sum_probs=67.8 Q ss_pred EEEEEEEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCC Q ss_conf 9999999993598---6999991789888983822573101787488999988887626520244202556652057886 Q gi|254780325|r 10 LLVVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKF 86 (141) Q Consensus 10 ~~vv~~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~ 86 (141) ..+++|+.++.++ ++||+.-+++ +..|-+|+|++|++||..+||.||+.||.|+........+...-.-++.+. T Consensus 9 r~vagCi~~r~~~~~ieVLlvsSs~~---~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l~~~~~g~~~~~~~~~~ 85 (145) T KOG2839 9 RLVAGCICYRSDKEKIEVLLVSSSKK---PHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKLGRLLGGFEDFLSKKHR 85 (145) T ss_pred EEEEEEEEEEECCCCEEEEEEECCCC---CCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHCCCHHHC T ss_conf 89977655630576137999966889---987627899778997688999999998717555411002412110584223 Q ss_pred EEE-EEEE-EE--EEECCEECC-CHHHEEEECCHHHHCC Q ss_conf 069-9999-99--975483768-8233157027788324 Q gi|254780325|r 87 HLL-MPFF-VC--HCFEGIPQS-CEGQQLQWVALDDLQN 120 (141) Q Consensus 87 ~~~-~~~~-~~--~~~~~~~~~-~E~~~~~Wi~~~el~~ 120 (141) ... .+.| .. .....-|.. .++.+.+|++++|.-. T Consensus 86 ~~~k~~~~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~ 124 (145) T KOG2839 86 TKPKGVMYVLAVTEELEDWPESEHEFREREWLKLEDAIE 124 (145) T ss_pred CCCCCEEEHHHHHHHCCCCHHHHCCCCEEEEEEHHHHHH T ss_conf 640306543344553036764511122257766988999 No 71 >cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s Probab=99.21 E-value=8e-11 Score=82.79 Aligned_cols=78 Identities=22% Similarity=0.299 Sum_probs=55.4 Q ss_pred EEEEEEEC-CC--EEEEEEECCCCC----CCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 99999935-98--699999178988----898382257310178748899998888762652024420255665205788 Q gi|254780325|r 13 VACAVFEP-GG--KVLLSCRPKDKS----HGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 13 v~~~ii~~-~~--~iLl~~R~~~~~----~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) +++++.+. ++ +|||++.. .+. ..|-|.+|.|+++.||++.+||+||+.||||+.++ ..++.+..+....+ T Consensus 3 AG~ll~R~~~g~~EVLLvHpG-GPfW~rkd~g~WsiPKG~~e~gE~p~~aA~RE~~EEtG~~~~-G~~~~Lg~~rq~gG- 79 (126) T cd04662 3 AGILLYRFRDGRIEVLLVHPG-GPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVD-GPFIDLGSLKQSGG- 79 (126) T ss_pred CEEEEEEECCCCEEEEEEECC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCC-CCCCCCCCEECCCC- T ss_conf 408889964997699998059-986467778861687877899879899999999976189989-86104601054799- Q ss_pred CEEEEEEEEE Q ss_conf 6069999999 Q gi|254780325|r 86 FHLLMPFFVC 95 (141) Q Consensus 86 ~~~~~~~~~~ 95 (141) + .+++|.+ T Consensus 80 K--~V~~WA~ 87 (126) T cd04662 80 K--VVHAWAV 87 (126) T ss_pred C--EEEEEEE T ss_conf 8--9999988 No 72 >cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are Probab=99.21 E-value=3.4e-11 Score=84.96 Aligned_cols=100 Identities=25% Similarity=0.378 Sum_probs=58.3 Q ss_pred EEEEECCC---EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 99993598---699999178988898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 15 CAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 15 ~~ii~~~~---~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) .+++++++ ++|+-+- + .+| |++|||.+|+|||+++||.||+.|||||..-..... +......+...+-.-+ T Consensus 4 pvv~r~~~~~~elL~f~h---p-~~g-~q~p~G~ve~gE~~~~aa~RE~~EEtGl~~~~~~~~-l~~~~~~~~~~rh~wH 77 (126) T cd04663 4 PAVLRRNGEVLELLVFEH---P-LAG-FQIVKGTVEPGETPEAAALRELQEESGLPSFLSDYI-LHVWERRFYQKRHFWH 77 (126) T ss_pred CEEEECCCCEEEEEEEEC---C-CCC-EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEE-EECCCCCEEEECEEEE T ss_conf 689961697068999817---8-885-476576758998989999999888768764202557-5136587076032799 Q ss_pred EEEEEEECCEECC-------CHHH--EEEECCHHHHCC Q ss_conf 9999975483768-------8233--157027788324 Q gi|254780325|r 92 FFVCHCFEGIPQS-------CEGQ--QLQWVALDDLQN 120 (141) Q Consensus 92 ~~~~~~~~~~~~~-------~E~~--~~~Wi~~~el~~ 120 (141) +..|+.....|.. ..+. .+.|+++....+ T Consensus 78 ~~l~e~~~~lpdtW~H~~~ddgG~~F~FFW~dl~~~p~ 115 (126) T cd04663 78 LTLCEVDQDLPDSWVHFVQDDGGHEFRFFWVDLASCLD 115 (126) T ss_pred EEEECCCCCCCCCCEEEECCCCCEEEEEEEEECCCCHH T ss_conf 99800478897543367058996589999878244905 No 73 >PRK10880 adenine DNA glycosylase; Provisional Probab=99.19 E-value=1.5e-10 Score=81.19 Aligned_cols=119 Identities=18% Similarity=0.219 Sum_probs=86.2 Q ss_pred EEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEE Q ss_conf 49999999993598699999178988898382257310178748899998888762652024420255665205788606 Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL 88 (141) Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~ 88 (141) +......+++.++|++||.||+..+.++|+|+||. . ..+...++...+.|+.... ......+.|.++|+++ T Consensus 229 p~~~~~~~ii~~~~~ill~kR~~~giw~gLw~fP~--~-----~~~~~~~~~~~~~~~~~~~--~~~l~~~~H~FSHf~L 299 (350) T PRK10880 229 PERTGYFLLLQHEDEVWLAQRPPSGLWGGLYCFPQ--F-----ADEEELRQWLAQRGINADN--LTQLTAFRHTFSHFHL 299 (350) T ss_pred CEEEEEEEEEEECCEEEEEECCCCCHHHHCCCCCC--C-----CCHHHHHHHHHHCCCCCCC--CEECCCEEEEEECEEE T ss_conf 77999999995099899983797773454454888--8-----8677899999982898100--0114762584106076 Q ss_pred EEEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 9999999975483768823315702778832488973698999999872 Q gi|254780325|r 89 LMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH 137 (141) Q Consensus 89 ~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~ 137 (141) .+..+........ ...+..+..|++++++.++.++.+-+++++.|+.- T Consensus 300 ~I~p~~~~~~~~~-~~~~~~~~~W~~~~~~~~~GLPaPvkKiL~~L~~~ 347 (350) T PRK10880 300 DIVPMWLPVSSFT-GCMDEGNALWYNLAQPPSVGLAAPVERLLQQLRTG 347 (350) T ss_pred EEEEEEEEECCCC-CCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHCCC T ss_conf 7389999814500-13556678564445302047878999999971404 No 74 >KOG0648 consensus Probab=99.08 E-value=1.4e-10 Score=81.37 Aligned_cols=111 Identities=18% Similarity=0.243 Sum_probs=73.2 Q ss_pred EEEEEEECCCEEEEEEECCCC-CCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEE Q ss_conf 999999359869999917898-8898382257310178748899998888762652024420255665205788606999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMP 91 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~-~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (141) +++.++|.++++|+.+-.... ...|.|-+|+|+++++|++-++++||++||||++..-..++.+.......-...-... T Consensus 118 vg~~V~n~~~eVlVv~e~d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~ef~eVla~r~~H~~~~~~~ksd~ 197 (295) T KOG0648 118 VGAFVLNKKKEVLVVQEKDGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTEFVEVLAFRRAHNATFGLIKSDM 197 (295) T ss_pred EEEEEECCCCEEEEEEECCCCEEECCCCCCCCEEECCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHCCCCCC T ss_conf 01367368863678972255323126510561375366540134555567775764154667778764111332134651 Q ss_pred EEEEEEE--CCEECC--CHHHEEEECCHHHHCCCCC Q ss_conf 9999975--483768--8233157027788324889 Q gi|254780325|r 92 FFVCHCF--EGIPQS--CEGQQLQWVALDDLQNYSM 123 (141) Q Consensus 92 ~~~~~~~--~~~~~~--~E~~~~~Wi~~~el~~~~~ 123 (141) ||.|... +..++. .|...++|++.++.-+.++ T Consensus 198 f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp~ 233 (295) T KOG0648 198 FFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQPL 233 (295) T ss_pred EEEEEEECCCCCCCHHHHHHHHHHCCCHHHHHCCCC T ss_conf 059996346444316589999875255777630500 No 75 >COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism] Probab=99.05 E-value=1.4e-09 Score=75.66 Aligned_cols=113 Identities=21% Similarity=0.260 Sum_probs=79.4 Q ss_pred EEEEEEEEEECCCEEEEEEECCC-CCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE---EEEEEEECCCC Q ss_conf 99999999935986999991789-888983822-57310178748899998888762652024420---25566520578 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKD-KSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSL---VPLTFISHPYE 84 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~-~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~---~~~~~~~~~~~ 84 (141) +..-.+.|++.+|++|++||+.. ..+|+.|.= .-|+--+|||.++|++|-+.+|+||..+.... .+-..+...+. T Consensus 33 HrAFS~~lFne~g~LLltrRA~~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~rf~YrA~~~ 112 (185) T COG1443 33 HRAFSSFLFNERGQLLLTRRALSKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILPRFRYRAADP 112 (185) T ss_pred HHHHHEEEECCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCC T ss_conf 74310468678886631014453255766343654279868874188999988998399875447402146517863589 Q ss_pred CC---EEEEEEEEEEEE-CCEECCCHHHEEEECCHHHHCCCC Q ss_conf 86---069999999975-483768823315702778832488 Q gi|254780325|r 85 KF---HLLMPFFVCHCF-EGIPQSCEGQQLQWVALDDLQNYS 122 (141) Q Consensus 85 ~~---~~~~~~~~~~~~-~~~~~~~E~~~~~Wi~~~el~~~~ 122 (141) +. +-+.+++.++.. .-.|.+.|+++++|++++++.+.. T Consensus 113 ~~~~E~Eic~V~~~~~~~~~~~npdEV~~~~wv~~e~l~~~~ 154 (185) T COG1443 113 DGIVENEICPVLAARLDSALDPNPDEVMDYRWVSPEDLKEMV 154 (185) T ss_pred CCCCEEEEEEEEEEEECCCCCCCHHHHHHEECCCHHHHHHHH T ss_conf 875300241388886137787996886241126899998752 No 76 >KOG3069 consensus Probab=99.05 E-value=1.1e-09 Score=76.22 Aligned_cols=99 Identities=22% Similarity=0.185 Sum_probs=64.9 Q ss_pred CEEEEEEECCCC-CCCCCEECCCCCCCCCC-CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE-EEEEEEEE- Q ss_conf 869999917898-88983822573101787-488999988887626520244202556652057886069-99999997- Q gi|254780325|r 22 GKVLLSCRPKDK-SHGEFWEFPGGKIEDGE-TPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL-MPFFVCHC- 97 (141) Q Consensus 22 ~~iLl~~R~~~~-~~~g~W~lPGG~ve~gE-s~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 97 (141) -++|++||+.+- .++|.=+||||+.|+.+ |..+||.||..||.|++.....+.+...-.....+..+. +..|..+. T Consensus 58 l~vLltkRSr~LrshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r~~~~v~p~v~~l~~~~ 137 (246) T KOG3069 58 LSVLLTKRSRTLRSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLRSGWSVFPVVGFLSDKK 137 (246) T ss_pred EEEEEEECCCCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCEEEEEEECCC T ss_conf 68999833563335687155788767834450488898878987399988825642154404526763130689973143 Q ss_pred --ECCEECCCHHHEEEECCHHHHCC Q ss_conf --54837688233157027788324 Q gi|254780325|r 98 --FEGIPQSCEGQQLQWVALDDLQN 120 (141) Q Consensus 98 --~~~~~~~~E~~~~~Wi~~~el~~ 120 (141) ....+...|+.++.|++++++.. T Consensus 138 ~l~~~~ln~gEv~~~F~VPL~~ll~ 162 (246) T KOG3069 138 ILPSLRLNSGEVESAFWVPLTDLLL 162 (246) T ss_pred CCCCCCCCCHHEEEEEEEEHHHHHH T ss_conf 3421358802402332201899732 No 77 >PRK13910 DNA glycosylase MutY; Provisional Probab=98.91 E-value=3e-09 Score=73.75 Aligned_cols=97 Identities=21% Similarity=0.312 Sum_probs=70.2 Q ss_pred EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEE Q ss_conf 99993598699999178988898382257310178748899998888762652024420255665205788606999999 Q gi|254780325|r 15 CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFV 94 (141) Q Consensus 15 ~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (141) .+++.+++++||.+|. .+.++|+|+||.- +|+.+.... .+..+.|.++++++.+.+|. T Consensus 191 ~~~i~~~~~ilL~k~~-~~~~~Glw~fP~~----------------ke~~~~~~~-----~l~~ikH~fTH~kl~i~v~~ 248 (290) T PRK13910 191 LGVVIQNNQIALEKIE-QKLYLGMHHFPNL----------------KENLEFKLP-----FLGAIKHSHTKFKLNLNLYL 248 (290) T ss_pred EEEEEECCEEEEEECC-CCCCCCCCCCCCC----------------CCCCCCCHH-----HHHHCEEEEEEEEEEEEEEE T ss_conf 9999989999998178-8666776659998----------------755565402-----33000001565779999998 Q ss_pred EEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 997548376882331570277883248897369899999987215 Q gi|254780325|r 95 CHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHAL 139 (141) Q Consensus 95 ~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~~ 139 (141) +...+ .....+|++++|+.+++++.+++++++.|++..+ T Consensus 249 ~~~k~------~~~~~~W~~l~el~~l~lps~~kKIL~~Lk~~~l 287 (290) T PRK13910 249 AAIKD------LKNPIRFYSLKDLETLPISSMTLKILNFLKQKNL 287 (290) T ss_pred EHHHC------CCCCCCEEEHHHHHHCCCCCHHHHHHHHHHHHCC T ss_conf 54105------8987743167775208898289999999977455 No 78 >KOG3041 consensus Probab=98.88 E-value=1.6e-08 Score=69.50 Aligned_cols=107 Identities=26% Similarity=0.266 Sum_probs=62.8 Q ss_pred EEEEEEECCCE--EEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEE Q ss_conf 99999935986--9999917898889838225731017874889999888876265202442025566520578860699 Q gi|254780325|r 13 VACAVFEPGGK--VLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLM 90 (141) Q Consensus 13 v~~~ii~~~~~--iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~ 90 (141) ++.+++..+|+ |++++.-+-|.-+-+-+||.|-++.||+++.||+||++||||+.-+....-......-.+++-+..+ T Consensus 77 aIl~il~~dG~~~ivL~kQfRpP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gkv~~~s~~~f~DPGltn~~~~i 156 (225) T KOG3041 77 AILAILESDGKPYIVLVKQFRPPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGKVDMVSPTVFLDPGLTNCNLCI 156 (225) T ss_pred EEEEEEECCCCEEEEEEEEECCCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCEECCCCCCCCCEEE T ss_conf 99999804896899997750489774789723554348976678889988887485531441263077279888871589 Q ss_pred EEEEEEEE--CC-EEC----CCHHHEEEECCHHHHC Q ss_conf 99999975--48-376----8823315702778832 Q gi|254780325|r 91 PFFVCHCF--EG-IPQ----SCEGQQLQWVALDDLQ 119 (141) Q Consensus 91 ~~~~~~~~--~~-~~~----~~E~~~~~Wi~~~el~ 119 (141) .++..+.. .+ .|. ..|.-+..-++..++. T Consensus 157 v~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~ 192 (225) T KOG3041 157 VVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELW 192 (225) T ss_pred EEEEECCCCCCCCCCCCCCCCCCEEEEEEEEHHHHH T ss_conf 999943887101586656788856999984188899 No 79 >cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer. Probab=98.54 E-value=4.7e-07 Score=61.05 Aligned_cols=108 Identities=18% Similarity=0.302 Sum_probs=62.9 Q ss_pred EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCC------------------CEEEEEEEECC-C Q ss_conf 6999991789888983822573101787488999988887626520244------------------20255665205-7 Q gi|254780325|r 23 KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF------------------SLVPLTFISHP-Y 83 (141) Q Consensus 23 ~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~------------------~~~~~~~~~~~-~ 83 (141) +++..+|..+ +.|.||||.+++||+...+++||+.||..-.++.. ..++.+.+..+ . T Consensus 50 efvai~r~d~----~~WAlPGGmVdpGE~vs~tL~Ref~eEal~~~~~~~~~~~~~~~~~~~~~~~g~~vY~GYVDDpRN 125 (186) T cd03670 50 QFVAIKRPDS----GEWAIPGGMVDPGEKISATLKREFGEEALNSLQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRN 125 (186) T ss_pred EEEEEEECCC----CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCCC T ss_conf 8999983488----854247652678840508999999999988653136777888889998860881996213489766 Q ss_pred CCCEEEE-EEEEEEEECCE------EC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 8860699-99999975483------76-882331570277883248897369899999987 Q gi|254780325|r 84 EKFHLLM-PFFVCHCFEGI------PQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRK 136 (141) Q Consensus 84 ~~~~~~~-~~~~~~~~~~~------~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~ 136 (141) ++.-|+- ..+.....+++ ++ ..+...++|+..+. ..++.+.+..+|+...+ T Consensus 126 TDNAWmETvavnfHd~~g~~~~~l~L~agDda~~v~W~~vd~--~~~LyAsH~~~l~~va~ 184 (186) T cd03670 126 TDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDS--KLPLYANHSQFLKKVAE 184 (186) T ss_pred CCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCC--CCCCCCCHHHHHHHHHH T ss_conf 654104567789864874501346400488641038998899--98510179999999986 No 80 >cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif. Probab=98.49 E-value=9.4e-07 Score=59.33 Aligned_cols=98 Identities=28% Similarity=0.398 Sum_probs=67.5 Q ss_pred CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC--EEEEEEEECCCCC-------CEEEEEE Q ss_conf 869999917898889838225731017874889999888876265202442--0255665205788-------6069999 Q gi|254780325|r 22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS--LVPLTFISHPYEK-------FHLLMPF 92 (141) Q Consensus 22 ~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~--~~~~~~~~~~~~~-------~~~~~~~ 92 (141) .-+||++... ...+.|.||-|..+.|||+.+||.|.+.|.+|-++...- -.+++...+.++. ...-++| T Consensus 13 tLyLlVk~k~--g~~~~W~fP~~~~~~~EtLr~~Aer~L~~~~G~~~~~~~vgnaP~g~~k~k~p~~~~~~~~~G~K~Ff 90 (132) T cd04661 13 TLVLLVQQKV--GSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPKAVRNEGIVGAKVFF 90 (132) T ss_pred EEEEEEEECC--CCCCEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCEEEEE T ss_conf 3999999537--98888028842466785489999999998607773678962687588987568522444666347999 Q ss_pred EEEEEECCEECCC-HHHEEEECCHHHHCCC Q ss_conf 9999754837688-2331570277883248 Q gi|254780325|r 93 FVCHCFEGIPQSC-EGQQLQWVALDDLQNY 121 (141) Q Consensus 93 ~~~~~~~~~~~~~-E~~~~~Wi~~~el~~~ 121 (141) |.+...+|..... ...++.|++.+||.++ T Consensus 91 ~ka~~~~G~~~~~~~~~df~Wltk~EL~~~ 120 (132) T cd04661 91 FKARYMSGQFELSQNQVDFKWLAKEELQKY 120 (132) T ss_pred EEEEEECCCCCCCCCCCEEEECCHHHHHHH T ss_conf 999995586465677520387089999876 No 81 >COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only] Probab=98.48 E-value=8.9e-07 Score=59.45 Aligned_cols=122 Identities=23% Similarity=0.316 Sum_probs=76.6 Q ss_pred EEEEEEEC-CC--EEEEEEECCCCCC----CCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 99999935-98--6999991789888----98382257310178748899998888762652024420255665205788 Q gi|254780325|r 13 VACAVFEP-GG--KVLLSCRPKDKSH----GEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 13 v~~~ii~~-~~--~iLl~~R~~~~~~----~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) ++..+.+. +| .+||++ +-.+.+ -|-|.+|.|-...||.+.-||+||..||+||.++- .++.+.+...+... T Consensus 6 AGvLlYR~~aG~v~VLLvH-PGGPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdG-P~~~lG~~kQ~GGK 83 (161) T COG4119 6 AGVLLYRARAGVVDVLLVH-PGGPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDG-PRIDLGSLKQSGGK 83 (161) T ss_pred CEEEEEEECCCCEEEEEEC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCEEECC-CHHHHHHHCCCCCC T ss_conf 2169998058978999965-899733147777410566654788677788888766651235247-06554343057970 Q ss_pred CEEEEEEEEEEE-----EC-----------CEEC-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 606999999997-----54-----------8376-88233157027788324889736989999998721 Q gi|254780325|r 86 FHLLMPFFVCHC-----FE-----------GIPQ-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKHA 138 (141) Q Consensus 86 ~~~~~~~~~~~~-----~~-----------~~~~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~~ 138 (141) . ++.+-..++. .+ |..+ --|++...|+++.+... .+..+.++.++.|..|. T Consensus 84 v-Vta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~-Kil~gQRpfldrL~a~~ 151 (161) T COG4119 84 V-VTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEART-KILKGQRPFLDRLMAHA 151 (161) T ss_pred E-EEEEEEEEEEEHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCEECHHHHH-HHHHCCCHHHHHHHHHH T ss_conf 8-99986431033435315603665699888643176543226346178786-77604552789999874 No 82 >KOG0142 consensus Probab=98.24 E-value=1.3e-06 Score=58.52 Aligned_cols=130 Identities=19% Similarity=0.291 Sum_probs=82.9 Q ss_pred EEEEEEEEEECCCEEEEEEECCCC-CCCCCEEC-----CC---CCCCC--CCCHHHHHHHHHHHHHCCCCC---CCCEEE Q ss_conf 999999999359869999917898-88983822-----57---31017--874889999888876265202---442025 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEF-----PG---GKIED--GETPEEALTRELFEELAIVVK---PFSLVP 75 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~l-----PG---G~ve~--gEs~~~a~~REv~EEtgi~~~---~~~~~~ 75 (141) +..-.+.+++.+|+.||++|+..+ .+|++|.= |= |..+. +.....||+|-+.-|+||... +.++.. T Consensus 52 HRaFSVFlFns~~~lLlQqRS~~KitFP~~~TNtccSHPL~~~~el~e~d~lGvr~AAqRkL~~ELGIp~e~v~pee~~~ 131 (225) T KOG0142 52 HRAFSVFLFNSKNELLLQQRSDEKITFPGLWTNTCCSHPLYNPGELEENDALGVRRAAQRKLKAELGIPLEEVPPEEFNF 131 (225) T ss_pred HHEEEEEEECCCCHHHHHHHCCCCCCCCCHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHCEE T ss_conf 32046898658514776540354411650555324248477866630574276899999987776199723068788100 Q ss_pred EEEEECC------CCCCEEEEEEEEEEEECCEECCCHHHEEEECCHHHHCCC--CCCCCCHHHHHHHHHHCC Q ss_conf 5665205------788606999999997548376882331570277883248--897369899999987215 Q gi|254780325|r 76 LTFISHP------YEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNY--SMLPADLSLISFLRKHAL 139 (141) Q Consensus 76 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~--~~~~~~~~ii~~l~~~~~ 139 (141) ++.+.|. .+...+.+.+|......-.|.++|+.+++|++++++.++ ....+-.|++..+-++++ T Consensus 132 ltrihYkA~sdg~wGEhEIDYiL~~~~~~~lnPnpnEv~e~ryvs~eelkel~~~~~~~~TPWfkli~~~~l 203 (225) T KOG0142 132 LTRIHYKAPSDGIWGEHEIDYILFLVKDVTLNPNPNEVSEIRYVSREELKELVAKASAGFTPWFKLISENFL 203 (225) T ss_pred HEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHEECHHHHHHHHHCCCCCCCHHHHHHHHHHH T ss_conf 114576157888754001347999843678897844555721126999999985566688859999999899 No 83 >KOG4195 consensus Probab=98.10 E-value=1.4e-05 Score=52.49 Aligned_cols=109 Identities=20% Similarity=0.396 Sum_probs=61.7 Q ss_pred EEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHH--CCCCCCCC----E-------EEEEEEECC-CCCCEE Q ss_conf 699999178988898382257310178748899998888762--65202442----0-------255665205-788606 Q gi|254780325|r 23 KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL--AIVVKPFS----L-------VPLTFISHP-YEKFHL 88 (141) Q Consensus 23 ~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEt--gi~~~~~~----~-------~~~~~~~~~-~~~~~~ 88 (141) +++.+||+.+ |.|.+|||.+|+||....+++||..||. ++.-.... + ++-+.+..+ .++.-| T Consensus 140 e~vavkr~d~----~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~~g~evYkGYvDDpRNTDNaW 215 (275) T KOG4195 140 EFVAVKRPDN----GEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLLSQCGMEVYKGYVDDPRNTDNAW 215 (275) T ss_pred EEEEEECCCC----CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCC T ss_conf 8999864788----742378776781234439999998998777876535889999997288288610027887665500 Q ss_pred EEE-EEEEEEECCEE------C-CCHHHEEEECCHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 999-99999754837------6-8823315702778832488973698999999872 Q gi|254780325|r 89 LMP-FFVCHCFEGIP------Q-SCEGQQLQWVALDDLQNYSMLPADLSLISFLRKH 137 (141) Q Consensus 89 ~~~-~~~~~~~~~~~------~-~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~~~ 137 (141) +-. .+.....+|.. . ..+...++|+..+ ..+++.+.+..+|+...+. T Consensus 216 mET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn--~~l~LyAshs~fi~lvae~ 270 (275) T KOG4195 216 METVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVN--SNLPLYASHSQFIQLVAEK 270 (275) T ss_pred EEEEEEEEECCCCCHHCCCCCCCCCCCCCEEEEEEC--CCCCCHHHHHHHHHHHHHH T ss_conf 267777664164311114431026763333679806--8863211589999999987 No 84 >COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Probab=98.08 E-value=5e-06 Score=55.14 Aligned_cols=107 Identities=21% Similarity=0.347 Sum_probs=73.2 Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEE Q ss_conf 99999999935986999991789888983822573101787488999988887626520244202556652057886069 Q gi|254780325|r 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLL 89 (141) Q Consensus 10 ~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~ 89 (141) ...++.++.+.+|++++.+|...+-++|+|+||....+. ... +..-+.++.. ..+..+.|.++++++. T Consensus 235 ~~~~~~~~~~~~~~~~l~kr~~~gl~~gl~~fP~~e~~~--~~~-----~~~~~~~~~~-----~~~~~~~H~fth~~l~ 302 (342) T COG1194 235 RRFAAFLILNRDGEVLLEKRPEKGLLGGLWCFPQFEDEA--DLL-----DWLAADGLAA-----EPLGAFRHTFTHFRLT 302 (342) T ss_pred HHEEEEEEECCCCCHHHHHCCCCCCEECCCCCCCCCCCC--HHH-----HHHHHCCCCC-----CCCCCEEEEEEEEEEE T ss_conf 003357787068531666276567221112056434332--046-----6765413210-----1243124346689999 Q ss_pred EEEEEEEEECCEECCCHHHEEEECCHHHHCCCCCCCCCHHHHHHHH Q ss_conf 9999999754837688233157027788324889736989999998 Q gi|254780325|r 90 MPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLISFLR 135 (141) Q Consensus 90 ~~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~~~~~~~~ii~~l~ 135 (141) +. +.+.... ... +..|++++++..+.++..-.++++.++ T Consensus 303 i~-~~a~~~~-----~~~-~~~w~~~~~~~~~~l~~p~~k~l~~~~ 341 (342) T COG1194 303 IE-LRASASL-----VLS-DGRWYNLSDLESIGLPAPVKKLLQQLK 341 (342) T ss_pred EE-EEEECCC-----CCC-CCEECCCCCCCCCCCCHHHHHHHHHHC T ss_conf 99-9863246-----788-734516344431355279999998732 No 85 >TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1; InterPro: IPR011876 This entry represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.; GO: 0004452 isopentenyl-diphosphate delta-isomerase activity, 0008299 isoprenoid biosynthetic process. Probab=97.99 E-value=9.5e-05 Score=47.75 Aligned_cols=114 Identities=21% Similarity=0.299 Sum_probs=73.2 Q ss_pred EEEEEEEEEEECCCEEEEEEECCCC-CCCCCEE-CCCCCCCC---CCC-----------HHHHHHHHHHHHHCCCCCCCC Q ss_conf 4999999999359869999917898-8898382-25731017---874-----------889999888876265202442 Q gi|254780325|r 9 ILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWE-FPGGKIED---GET-----------PEEALTRELFEELAIVVKPFS 72 (141) Q Consensus 9 ~~~vv~~~ii~~~~~iLl~~R~~~~-~~~g~W~-lPGG~ve~---gEs-----------~~~a~~REv~EEtgi~~~~~~ 72 (141) .+.+-.+-|++.++++||+||+..+ .+||.|. --=||=-+ ||- ..+||+|-..-|+||..+... T Consensus 29 LHrAFS~flfn~~~~LL~qrRa~~K~twP~vWTNsCCsHP~~q~~G~l~q~~~~~~~~Gvk~~A~RRl~~~LGi~~~~~~ 108 (190) T TIGR02150 29 LHRAFSVFLFNDQGRLLLQRRAASKITWPGVWTNSCCSHPLPQTPGTLAQSTLEENVLGVKNAAIRRLLAELGIPADDVD 108 (190) T ss_pred EEEEEEEEEECCCCCEEEEEECCCCCCCCCCEECCEECCCCCCCCCCCHHCCCCHHHHCCHHHHHHHHHHHCCCCCCCCC T ss_conf 23136767771898368888401188437840034027878888885101146111103326788878763488512236 Q ss_pred -----EEEEEEEECCC----CC-CEEEEEEEEEEE--ECCE--ECCCHHHEEEECCHHHHCCCC Q ss_conf -----02556652057----88-606999999997--5483--768823315702778832488 Q gi|254780325|r 73 -----LVPLTFISHPY----EK-FHLLMPFFVCHC--FEGI--PQSCEGQQLQWVALDDLQNYS 122 (141) Q Consensus 73 -----~~~~~~~~~~~----~~-~~~~~~~~~~~~--~~~~--~~~~E~~~~~Wi~~~el~~~~ 122 (141) +++-..+.-.+ .. .+.+.++|.+.. .+.. |.+.+.+.++|++.+++.++. T Consensus 109 ~~~~~~L~~~~Y~A~~~s~g~~G~h~~~~~~~~~~nk~~~~~~PnP~~v~~~~W~~~~~~~~~~ 172 (190) T TIGR02150 109 VDELTVLPRFSYRARDGSDGAWGIHEVCPVFFARKNKADVPVNPNPPEVAAIKWVSLEVLREVL 172 (190) T ss_pred HHHHHHCCCCEEEECCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCCHHHEEEECCHHHHHHHH T ss_conf 7572003473366144345778758511589997234588876897224214402689999984 No 86 >TIGR00052 TIGR00052 conserved hypothetical protein TIGR00052; InterPro: IPR004385 This entry describes a family of proteins which appear to catalyse the hydrolysis of phosphorus-containing acid anhydrides such as nucleoside diphosphate, for example ADP-mannose and UDP-glucose . Some of these enzymes play a key role in glycogen biosynthesis.; GO: 0016818 hydrolase activity acting on acid anhydrides in phosphorus-containing anhydrides, 0046872 metal ion binding. Probab=97.74 E-value=3.4e-05 Score=50.36 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=49.3 Q ss_pred CEECCCCCCCCC-CCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEECCE Q ss_conf 382257310178-7488999988887626520244202556652057886069999999975483 Q gi|254780325|r 38 FWEFPGGKIEDG-ETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI 101 (141) Q Consensus 38 ~W~lPGG~ve~g-Es~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (141) .|++..|.|+.| |++|++|.||-.||||+.+.|.++..+.++...-+...=..++|.+.+.++. T Consensus 88 tYe~~ag~v~~~n~~~E~~a~~EA~EE~G~~vsPk~~~~~~~~y~spGg~~el~~lf~aEv~~~~ 152 (199) T TIGR00052 88 TYELVAGMVEKGNESPEDVARREAIEEAGYQVSPKNLEKILSFYSSPGGVTELIHLFIAEVDKNQ 152 (199) T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCEECCCCCEEEEEEEECCCCCHHHHHHHHHEHHHHH T ss_conf 44554222530388666776554264468665586400233344068972021232110101454 No 87 >KOG2937 consensus Probab=97.67 E-value=9e-06 Score=53.67 Aligned_cols=107 Identities=20% Similarity=0.180 Sum_probs=63.9 Q ss_pred CCEEEEEEEEEEECC-CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCC Q ss_conf 864999999999359-8699999178988898382257310178748899998888762652024420255665205788 Q gi|254780325|r 7 KKILLVVACAVFEPG-GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEK 85 (141) Q Consensus 7 k~~~~vv~~~ii~~~-~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~ 85 (141) |..+.+.+++|++.. .++|+++-. .+.-|.||-|++...|+..+|++||+.||+|.+...--. ....+.....+ T Consensus 79 k~~iPv~ga~ild~~~sr~llv~g~----qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~-~~e~Ie~nI~d 153 (348) T KOG2937 79 KARIPVRGAIILDEKRSRCLLVKGW----QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQ-DNEGIETNIRD 153 (348) T ss_pred CCCCCCCHHHHHHHHHHHHEEEECE----ECCCCCCCCCCCCCCCHHHHCCHHCCCCHHHCCHHHHHC-CCCCCCEEHHH T ss_conf 4778871676542366555001000----124555567665543212112211235212036888735-04585301320 Q ss_pred CEEE---EEEEEEEEECCEECCCHHHEEEECCHHHH Q ss_conf 6069---99999997548376882331570277883 Q gi|254780325|r 86 FHLL---MPFFVCHCFEGIPQSCEGQQLQWVALDDL 118 (141) Q Consensus 86 ~~~~---~~~~~~~~~~~~~~~~E~~~~~Wi~~~el 118 (141) ..+. ..-+.++..-.-..-.|.+...|..++++ T Consensus 154 q~~~~fIi~gvs~d~~f~~~v~~eis~ihW~~l~~l 189 (348) T KOG2937 154 QLVRLFIINGVSEDTNFNPRVRKEISKIHWHYLDHL 189 (348) T ss_pred CEEEEEEECCCEEEEECCHHHHCCCCCEEEEEHHHH T ss_conf 100356652613565115153245330244424210 No 88 >COG4112 Predicted phosphoesterase (MutT family) [General function prediction only] Probab=97.58 E-value=0.00077 Score=42.51 Aligned_cols=113 Identities=20% Similarity=0.315 Sum_probs=63.9 Q ss_pred CCCCCEEEEEEEEEEECCCEEEEEEECCCC---CCCCCEEC-CCCCCCCCCC---HHH----HHHHHHHHHHCCCCC--- Q ss_conf 447864999999999359869999917898---88983822-5731017874---889----999888876265202--- Q gi|254780325|r 4 VNLKKILLVVACAVFEPGGKVLLSCRPKDK---SHGEFWEF-PGGKIEDGET---PEE----ALTRELFEELAIVVK--- 69 (141) Q Consensus 4 ~~mk~~~~vv~~~ii~~~~~iLl~~R~~~~---~~~g~W~l-PGG~ve~gEs---~~~----a~~REv~EEtgi~~~--- 69 (141) +..|.++.- +++.+.++||+-.|-.++ ..-+++.+ .||++..++- .++ .+.||+.||+++.-. T Consensus 57 p~~KQ~IpY---vvi~~edevliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q 133 (203) T COG4112 57 PTTKQVIPY---VVIMDEDEVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQ 133 (203) T ss_pred CCCCCCCCE---EEEECCCEEEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHH T ss_conf 553553447---99951877999972147634433243122325544568872309999700067777887394777754 Q ss_pred CCCEEEEEEEE-CCCCCCEEEEEEEEEEEECCE--ECCCHHHEEEECCHHHHCC Q ss_conf 44202556652-057886069999999975483--7688233157027788324 Q gi|254780325|r 70 PFSLVPLTFIS-HPYEKFHLLMPFFVCHCFEGI--PQSCEGQQLQWVALDDLQN 120 (141) Q Consensus 70 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~E~~~~~Wi~~~el~~ 120 (141) ...++++..-. ..-+..|+- .+|..+...+. ....+--..+|+.+.++.+ T Consensus 134 ~~e~lGlINdd~neVgkVHiG-~lf~~~~k~ndvevKEkd~~~~kwik~~ele~ 186 (203) T COG4112 134 ELEFLGLINDDTNEVGKVHIG-ALFLGRGKFNDVEVKEKDLFEWKWIKLEELEK 186 (203) T ss_pred HHEEEEEECCCCCCCCEEEEE-EEEEEECCCCCEEEEECCEEEEEEEEHHHHHH T ss_conf 300366443788610127888-89985124241024310111123213777888 No 89 >KOG4313 consensus Probab=96.96 E-value=0.0018 Score=40.34 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=64.4 Q ss_pred EEEEEEECCCC-CCCCCEE-CCCCCCCCCCCHHHHHHHHHHHHHCCCCC-CCCEEEEEEEECC-CCCCEE----EEEEEE Q ss_conf 69999917898-8898382-25731017874889999888876265202-4420255665205-788606----999999 Q gi|254780325|r 23 KVLLSCRPKDK-SHGEFWE-FPGGKIEDGETPEEALTRELFEELAIVVK-PFSLVPLTFISHP-YEKFHL----LMPFFV 94 (141) Q Consensus 23 ~iLl~~R~~~~-~~~g~W~-lPGG~ve~gEs~~~a~~REv~EEtgi~~~-~~~~~~~~~~~~~-~~~~~~----~~~~~~ 94 (141) +|-+.||++.+ .+||+|+ ..||.+-.|-++.++++.|..||.+|..+ ...+.+.+.+++- +...+. +-++|. T Consensus 149 ~iWvprRS~TKqTWP~~lDN~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~~Nlv~~G~VSy~~~esr~~~~pe~qYVfD 228 (306) T KOG4313 149 CIWVPRRSNTKQTWPGKLDNMVAGGLSVGFGIKETAIKEAAEEANLPSDLVKNLVSAGCVSYYKFESRQGLFPETQYVFD 228 (306) T ss_pred EEEECCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHCCEECCEEEEEEEEHHHCCCCCCEEEEE T ss_conf 89830468844567614552222465667217789999888761784666751310341688866213236866259982 Q ss_pred EEEE-CCEECCC--HHHEEEECCHHHH Q ss_conf 9975-4837688--2331570277883 Q gi|254780325|r 95 CHCF-EGIPQSC--EGQQLQWVALDDL 118 (141) Q Consensus 95 ~~~~-~~~~~~~--E~~~~~Wi~~~el 118 (141) .... +..|+.+ |++.+.-+++++. T Consensus 229 L~l~~d~iP~~nDGEV~~F~Lltl~~~ 255 (306) T KOG4313 229 LELPLDFIPQNNDGEVQAFELLTLKDC 255 (306) T ss_pred CCCCHHHCCCCCCCCEEEEEEECHHHH T ss_conf 457453047788873345763219999 No 90 >KOG4432 consensus Probab=96.63 E-value=0.0052 Score=37.72 Aligned_cols=60 Identities=18% Similarity=0.164 Sum_probs=40.9 Q ss_pred EECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCEEEEEEEEEEEE Q ss_conf 822573101787488999988887626520244202556652057886069999999975 Q gi|254780325|r 39 WEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCF 98 (141) Q Consensus 39 W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (141) .++-||-++..-|+.+-|.-|+.||+|..+++..++...++........-..++|.|... T Consensus 81 ielc~g~idke~s~~eia~eev~eecgy~v~~d~l~hv~~~~~g~~~s~sa~~l~y~ei~ 140 (405) T KOG4432 81 IELCAGLIDKELSPREIASEEVAEECGYRVDPDDLIHVITFVVGAHQSGSAQHLYYAEID 140 (405) T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCEEEEEEEECCCCCCCCHHEEEEECC T ss_conf 453033124455988876799999718758846704778998415667630301000012 No 91 >KOG1689 consensus Probab=96.55 E-value=0.0055 Score=37.60 Aligned_cols=57 Identities=26% Similarity=0.462 Sum_probs=40.8 Q ss_pred CCCCCCCEEEEEEEEEEECC--CEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 86447864999999999359--86999991789888983822573101787488999988887626 Q gi|254780325|r 2 IDVNLKKILLVVACAVFEPG--GKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 (141) Q Consensus 2 ~~~~mk~~~~vv~~~ii~~~--~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtg 65 (141) +++.|++.+..| .|+... -.||+.+-.+ ..+-+|||++++||+-.+.+.|-+-|-+| T Consensus 64 ~k~gmRrsvegv--livheH~lPHvLLLQig~-----tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221) T KOG1689 64 MKEGMRRSVEGV--LIVHEHNLPHVLLLQIGN-----TFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221) T ss_pred HHHHHHHEEEEE--EEEEECCCCEEEEEEECC-----EEEECCCCCCCCCCCHHHHHHHHHHHHHC T ss_conf 765422000036--887405887089885078-----77736787557885335779999999865 No 92 >KOG4548 consensus Probab=95.51 E-value=0.082 Score=30.84 Aligned_cols=99 Identities=16% Similarity=0.211 Sum_probs=61.7 Q ss_pred CCEEEEEEECCCCCCCCCEECCCCCC-CCCCCHHHHHHHHHHHHHCCCCCCC--CEEEEEEEECCCCC-------CEEEE Q ss_conf 98699999178988898382257310-1787488999988887626520244--20255665205788-------60699 Q gi|254780325|r 21 GGKVLLSCRPKDKSHGEFWEFPGGKI-EDGETPEEALTRELFEELAIVVKPF--SLVPLTFISHPYEK-------FHLLM 90 (141) Q Consensus 21 ~~~iLl~~R~~~~~~~g~W~lPGG~v-e~gEs~~~a~~REv~EEtgi~~~~~--~~~~~~~~~~~~~~-------~~~~~ 90 (141) ..-+||++|.-+ ..+.|.||-+.. +.+++...+|.|++++=.|=+.... .-.++.+..+.++. ..... T Consensus 138 r~LyLLV~~k~g--~~s~w~fP~~~~s~~~~~lr~~ae~~Lk~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ 215 (263) T KOG4548 138 RKLYLLVKRKFG--KSSVWIFPNRQFSSSEKTLRGHAERDLKVLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKV 215 (263) T ss_pred CEEEEEEEECCC--CCCEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCEE T ss_conf 017887763267--655205778654776522888999999987233023310205745656666841234212445315 Q ss_pred EEEEEEEECCE-ECCCHHHEEEECCHHHHCCC Q ss_conf 99999975483-76882331570277883248 Q gi|254780325|r 91 PFFVCHCFEGI-PQSCEGQQLQWVALDDLQNY 121 (141) Q Consensus 91 ~~~~~~~~~~~-~~~~E~~~~~Wi~~~el~~~ 121 (141) .+|.|....+. +...-..++.|++.+++.++ T Consensus 216 ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~ 247 (263) T KOG4548 216 FFFKASLVANSNQKNQNKEDFVWVTKDELGEK 247 (263) T ss_pred EEEEEEECCCCCHHCCCCCCEEEECHHHHHHH T ss_conf 77653201564122045341488655887535 No 93 >KOG4432 consensus Probab=95.07 E-value=0.087 Score=30.69 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=48.1 Q ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEEEEEC-CCCCCEEEEEEEEEEEECCE---EC-----CCHHH Q ss_conf 38225731017874889999888876265202442025566520-57886069999999975483---76-----88233 Q gi|254780325|r 38 FWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISH-PYEKFHLLMPFFVCHCFEGI---PQ-----SCEGQ 108 (141) Q Consensus 38 ~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~-----~~E~~ 108 (141) .-++-.|.|+..-|..+-+.||..||+|.++-...+.....+.. -..... .-..|.|++.+.. |- ..|.- T Consensus 285 TlELcag~Vd~p~s~~e~a~~e~veecGYdlp~~~~k~va~y~sGVG~SG~-~QTmfy~eVTdA~rsgpGgg~~ee~E~I 363 (405) T KOG4432 285 TLELCAGRVDDPFSDPEKAARESVEECGYDLPEDSFKLVAKYISGVGQSGD-TQTMFYVEVTDARRSGPGGGEKEEDEDI 363 (405) T ss_pred EEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCCCCCC-EEEEEEEEEEHHHCCCCCCCCCCCCCEE T ss_conf 645432457887651889999999984788987887656423036677687-0479999940000258997744566523 Q ss_pred EEEECCHHHHCCC Q ss_conf 1570277883248 Q gi|254780325|r 109 QLQWVALDDLQNY 121 (141) Q Consensus 109 ~~~Wi~~~el~~~ 121 (141) +.-=+++++++.+ T Consensus 364 Evv~lsle~a~~~ 376 (405) T KOG4432 364 EVVRLSLEDAPSL 376 (405) T ss_pred EEEEECHHHHHHH T ss_conf 6798536452677 No 94 >TIGR01084 mutY A/G-specific adenine glycosylase; InterPro: IPR005760 The DNA repair enzyme MutY plays an important role in the prevention of DNA mutations resulting from the presence of the oxidatively damaged lesion 7,8-dihydro-8-oxo-2'-deoxyguanosine (8-OxoG). 8-OxoG can mispair with 2'-deoxycytidine 5'-triphosphate or with 2'-deoxyadenosine triphosphate during DNA replication, forming C*8-oxoG and A*8-oxoG mispairs. Human MutY is responsible for recognition and removal of the inappropriately inserted adenine in an A=8-oxoG mispair. If unrepaired, the A=8-oxoG mispairs can result in deleterious C:G to A:T transversions. Multiple forms of mammalian MutY are formed by alternative splicing and locate to the nucleus or mitochondrion, where they have been shown to interact with several other proteins involved in the repair of DNA damage . The HhH-GPD domain within the protein binds the phosphate backbone of the substrate. This family represents bacterial MutY and a limited number of murine homologs. In rat, the Escherichia coli MutY DNA glycosylase homolog (MYH) is induced in response to mitochondrial DNA damage . ; GO: 0019104 DNA N-glycosylase activity, 0006284 base-excision repair, 0005622 intracellular. Probab=93.71 E-value=0.072 Score=31.17 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=27.0 Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCEECCCCCCC Q ss_conf 9999935986999991789888983822573101 Q gi|254780325|r 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIE 47 (141) Q Consensus 14 ~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve 47 (141) ..++.+.|++|++.+|+.++-++|+|+||-=..+ T Consensus 245 ~l~l~~~d~~~~~~~r~~~~l~gGLy~fP~~~~~ 278 (297) T TIGR01084 245 FLVLLNEDGEVLLEQRPEKGLWGGLYCFPQFELE 278 (297) T ss_pred EEEEEECCCCEEEEECCCCCCCCCCCCCCHHHHH T ss_conf 2234414870576663766410010036525532 No 95 >TIGR00586 mutt mutator mutT protein; InterPro: IPR003561 MutT is a small bacterial protein (~12-15kDa) involved in the GO system responsible for removing an oxidatively damaged form of guanine (8-hydroxy- guanine or 7,8-dihydro-8-oxoguanine) from DNA and the nucleotide pool. 8-oxo-dGTP is inserted opposite dA and dC residues of template DNA with near equal efficiency, leading to A.T to G.C transversions. MutT specifically degrades 8-oxo-dGTP to the monophosphate, with the concomitant release of pyrophosphate. A short conserved N-terminal region of mutT (designated the MutT domain) is also found in a variety of other prokaryotic, viral, and eukaryotic proteins , , , . Recently, the generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family . The solution structure of the MutT enzyme has been solved by NMR . The structure is globular and compact, and contains a five-stranded mixed beta-sheet. The parallel portion of the sheet is sandwiched between two alpha-helices, forming an alpha+beta fold. ; GO: 0008413 8-oxo-78-dihydroguanine triphosphatase activity, 0006281 DNA repair. Probab=91.24 E-value=0.0065 Score=37.17 Aligned_cols=60 Identities=32% Similarity=0.276 Sum_probs=48.6 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC Q ss_conf 999999359869999917898889838225731017874889999888876265202442 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~ 72 (141) .+.++-+..|+.....|..+.+.++..+||||+++.||+.+.+..+++.|+.|+.....+ T Consensus 84 ~~~L~~~~~gep~~~~raada~~a~klefpggk~e~g~~~~w~~~~~L~~~~gfppan~~ 143 (150) T TIGR00586 84 YVYLVQEWSGEPFGKERAADAHMANKLEFPGGKIEMGEEGEWVAITDLDEERGFPPANAE 143 (150) T ss_pred HHEEHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCCEEEEEECCCCCCCCCCCHH T ss_conf 310014333881022455556665431278860221798517898414556788840268 No 96 >KOG2457 consensus Probab=89.39 E-value=0.053 Score=31.90 Aligned_cols=100 Identities=16% Similarity=0.137 Sum_probs=53.4 Q ss_pred CCEEEEEEECCCCCCCCCEECCCCCC-CCCCCH-HHHHHHH-HHHHHCCCCC-CC-CEEEEEEEECCCCCCEEEEEEEEE Q ss_conf 98699999178988898382257310-178748-8999988-8876265202-44-202556652057886069999999 Q gi|254780325|r 21 GGKVLLSCRPKDKSHGEFWEFPGGKI-EDGETP-EEALTRE-LFEELAIVVK-PF-SLVPLTFISHPYEKFHLLMPFFVC 95 (141) Q Consensus 21 ~~~iLl~~R~~~~~~~g~W~lPGG~v-e~gEs~-~~a~~RE-v~EEtgi~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~ 95 (141) .+.||+.+|++-+.++|+|.||.=-- +++|-. ..|.+++ +.-+++..-. .. +....+...|.+++...+.++|.. T Consensus 386 ~~~ilv~~rp~~gllagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~~~~t~~~~~~~~G~~~htfshi~~ts~V~~~ 465 (555) T KOG2457 386 RNAILVYLRPAFGLLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLVVQLTGGTEDLFKGQAKHTFSHICVTSDVLST 465 (555) T ss_pred CCEEEEEECCCHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 01057785442147877643572110575227789999999999996234001231332165022003355568889887 Q ss_pred EEECCEECCCHHHEEEECCHHHHCC Q ss_conf 9754837688233157027788324 Q gi|254780325|r 96 HCFEGIPQSCEGQQLQWVALDDLQN 120 (141) Q Consensus 96 ~~~~~~~~~~E~~~~~Wi~~~el~~ 120 (141) -..+..+...--..++|++-.++.. T Consensus 466 a~~~~~~vt~~p~~~~wi~q~~l~h 490 (555) T KOG2457 466 AGLTSAVVTVPPFRLQWIKQLSLDH 490 (555) T ss_pred HHCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 5157875026973320234544689 No 97 >pfam08584 Ribonuc_P_40 Ribonuclease P 40kDa (Rpp40) subunit. The tRNA processing enzyme ribonuclease P (RNase P) consists of an RNA molecule and at least eight protein subunits. Subunits hpop1, Rpp21, Rpp29, Rpp30, Rpp38, and Rpp40 (this entry) are involved in extensive, but weak, protein-protein interactions in the holoenzyme complex. Probab=47.93 E-value=20 Score=17.08 Aligned_cols=49 Identities=20% Similarity=0.317 Sum_probs=32.4 Q ss_pred ECCCEEEEEEECCCCCCCCCEEC-CCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCEE Q ss_conf 35986999991789888983822-573101787488999988887626520244202 Q gi|254780325|r 19 EPGGKVLLSCRPKDKSHGEFWEF-PGGKIEDGETPEEALTRELFEELAIVVKPFSLV 74 (141) Q Consensus 19 ~~~~~iLl~~R~~~~~~~g~W~l-PGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~~ 74 (141) .++|.+++.-.. ...-.+.+++ |.|++-.. +-||..|++||..++..+- T Consensus 14 iK~G~~~~LS~~-rid~dnv~al~p~G~L~Ls------LdKeTYe~lGL~Gkps~~~ 63 (283) T pfam08584 14 IKKGNFYALSET-RIDSDNVFALLPNGKLILS------LDKETYERLGLQGKPSRFG 63 (283) T ss_pred EECCCEEEEECC-CCCCCCEEEECCCCEEEEE------ECHHHHHHCCCCCCCCCCC T ss_conf 005848998679-8898876998059858999------6588898738777744567 No 98 >KOG1202 consensus Probab=47.34 E-value=22 Score=16.78 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=20.3 Q ss_pred ECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCE Q ss_conf 2257310178748899998888762652024420 Q gi|254780325|r 40 EFPGGKIEDGETPEEALTRELFEELAIVVKPFSL 73 (141) Q Consensus 40 ~lPGG~ve~gEs~~~a~~REv~EEtgi~~~~~~~ 73 (141) .||.|. .++.++||+.+|.|++.+..-+ T Consensus 271 TfP~G~------~Q~qLi~e~Yse~Gl~P~sv~Y 298 (2376) T KOG1202 271 TFPSGD------MQEQLIRETYSEAGLNPESVVY 298 (2376) T ss_pred CCCCCH------HHHHHHHHHHHHCCCCCCCEEE T ss_conf 578807------9999999999861989232799 No 99 >PRK07198 hypothetical protein; Validated Probab=34.68 E-value=38 Score=15.47 Aligned_cols=46 Identities=28% Similarity=0.469 Sum_probs=31.2 Q ss_pred EEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 999935986999991789888983822573101787488999988887626 Q gi|254780325|r 15 CAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 (141) Q Consensus 15 ~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~~REv~EEtg 65 (141) +-|+..+|.+.+.|-+-+| -|-|||=.-..| .-+..++|-++|+|| T Consensus 155 G~il~~~g~~~VtK~AveP----VWYLPGvA~Rfg-~~E~~LRr~LFe~Tg 200 (418) T PRK07198 155 GRVLLANGDVVVTKAAIEP----VWYLPGVAERFG-VSETDLRRTLFEQTG 200 (418) T ss_pred CEEECCCCCEEEEEEEECC----CCCCHHHHHHCC-CCHHHHHHHHHHHCC T ss_conf 8587478868899875233----224622597809-978999999998727 No 100 >PRK09605 O-sialoglycoprotein endopeptidase/protein kinase; Reviewed Probab=28.87 E-value=48 Score=14.89 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=38.9 Q ss_pred CCEEEEEEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCC------HHHHHHHHHHHHHCCCCCCCCEEE Q ss_conf 864999999999359869999917898889838225731017874------889999888876265202442025 Q gi|254780325|r 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGET------PEEALTRELFEELAIVVKPFSLVP 75 (141) Q Consensus 7 k~~~~vv~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs------~~~a~~REv~EEtgi~~~~~~~~~ 75 (141) +..-.-.+++|++.++++|-..|.. +.-|+|.+-|-+. ....+.++..+|.|+.......+. T Consensus 8 E~Sa~~~gv~ivd~~g~il~n~~~~-------~~p~~GGvvPe~Aar~H~~~i~~vv~~aL~~A~i~~~dIdaIA 75 (536) T PRK09605 8 EGTAWKTSAGIVDEDGEILANVSDP-------YKPEVGGIHPREAAEHHAEAIPKVIKEALEEAGIKKGDIDLVA 75 (536) T ss_pred ECCCCCCEEEEECCCCCEEEEEEEE-------EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEE T ss_conf 8675661799992899885642131-------1599999990899999999999999999998499988898999 No 101 >PRK00047 glpK glycerol kinase; Provisional Probab=28.60 E-value=48 Score=14.86 Aligned_cols=67 Identities=15% Similarity=0.242 Sum_probs=38.6 Q ss_pred CCCCCEEEE-------EEEEEEECCCEEEEEEECCCCC-CCCCEECCCCCCCCC--CCH--HHHHHHHHHHHHCCCCCCC Q ss_conf 447864999-------9999993598699999178988-898382257310178--748--8999988887626520244 Q gi|254780325|r 4 VNLKKILLV-------VACAVFEPGGKVLLSCRPKDKS-HGEFWEFPGGKIEDG--ETP--EEALTRELFEELAIVVKPF 71 (141) Q Consensus 4 ~~mk~~~~v-------v~~~ii~~~~~iLl~~R~~~~~-~~g~W~lPGG~ve~g--Es~--~~a~~REv~EEtgi~~~~~ 71 (141) |+|++.+.. +-+++++.+|+++-..+...+. .+ -.|.+|.+ +-. ...+.||+.++.|+... T Consensus 1 ~Mm~~yvlgiD~GTts~Ka~l~d~~G~~~a~~~~~~~~~~p-----~~g~~EqDp~~~W~~~~~~i~~~~~~~~i~~~-- 73 (498) T PRK00047 1 MMMKKYILALDQGTTSSRAIIFDHKGNIVSVAQKEFTQIFP-----QPGWVEHDPNEIWASQLSVIAEALAKAGISPD-- 73 (498) T ss_pred CCCCCEEEEEECCCCEEEEEEECCCCCEEEEEEECCCCCCC-----CCCCEEECHHHHHHHHHHHHHHHHHHCCCCHH-- T ss_conf 98768799997463303566996999999999852562059-----99857788999999999999999997499866-- Q ss_pred CEEEEE Q ss_conf 202556 Q gi|254780325|r 72 SLVPLT 77 (141) Q Consensus 72 ~~~~~~ 77 (141) ++.++. T Consensus 74 ~I~aIg 79 (498) T PRK00047 74 QIAAIG 79 (498) T ss_pred HEEEEE T ss_conf 779999 No 102 >pfam09520 RE_MjaII MjaII restriction endonuclease. This family includes the MjaII (recognizes GGNCC but the cleavage site is unknown) restriction endonuclease. Probab=28.13 E-value=20 Score=17.03 Aligned_cols=11 Identities=18% Similarity=0.220 Sum_probs=5.0 Q ss_pred HHHHHHHHHHH Q ss_conf 99998888762 Q gi|254780325|r 54 EALTRELFEEL 64 (141) Q Consensus 54 ~a~~REv~EEt 64 (141) .++.|.+.+-. T Consensus 172 ~~~k~klL~~~ 182 (252) T pfam09520 172 LTVKRKLLRIK 182 (252) T ss_pred HHHHHHHHHHH T ss_conf 99999999998 No 103 >pfam07026 DUF1317 Protein of unknown function (DUF1317). This family consists of several hypothetical bacterial and phage proteins of around 60 residues in length. The function of this family is unknown. Probab=27.80 E-value=46 Score=14.95 Aligned_cols=25 Identities=36% Similarity=0.589 Sum_probs=16.2 Q ss_pred CCEECCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 83822573101787488999988887626 Q gi|254780325|r 37 EFWEFPGGKIEDGETPEEALTRELFEELA 65 (141) Q Consensus 37 g~W~lPGG~ve~gEs~~~a~~REv~EEtg 65 (141) .=|-+|||++-.+--..+-+ .||.+ T Consensus 22 ~GWl~Pgg~vi~NPlkAqr~----AEe~N 46 (60) T pfam07026 22 RGWLFPGGKIIKNPFKAQNA----AEEIN 46 (60) T ss_pred CEEECCCCEEECCHHHHHHH----HHHHH T ss_conf 42153685224495788889----99975 No 104 >pfam11152 DUF2930 Protein of unknown function (DUF2930). This family of proteins has no known function. Probab=24.77 E-value=57 Score=14.45 Aligned_cols=36 Identities=31% Similarity=0.317 Sum_probs=21.2 Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCEECCCCCCCCCCCHHHHH Q ss_conf 99999935986999991789888983822573101787488999 Q gi|254780325|r 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEAL 56 (141) Q Consensus 13 v~~~ii~~~~~iLl~~R~~~~~~~g~W~lPGG~ve~gEs~~~a~ 56 (141) +..+++..+|++++.+ |.|.-+...+++|+..+.+. T Consensus 94 a~svlV~~~g~~llrR--------G~~~~~~~~~~pG~i~~r~~ 129 (196) T pfam11152 94 AASVLVYWDGQVLLRR--------GILGPPVSKFEPGEICKRAM 129 (196) T ss_pred CCEEEEEECCEEEEEE--------CCCCCCCCCCCHHHHHHHHH T ss_conf 6089999899999962--------03579877678679999998 No 105 >KOG2479 consensus Probab=24.28 E-value=48 Score=14.87 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=14.7 Q ss_pred EEEEEEEECCEECCCHHHEEEECCHHHHCCCC Q ss_conf 99999975483768823315702778832488 Q gi|254780325|r 91 PFFVCHCFEGIPQSCEGQQLQWVALDDLQNYS 122 (141) Q Consensus 91 ~~~~~~~~~~~~~~~E~~~~~Wi~~~el~~~~ 122 (141) .+..|+. +|.++.. ..+..++++..|++++ T Consensus 372 Lv~RcE~-dgvv~g~-~ne~qfltIkAlNEwD 401 (549) T KOG2479 372 LVARCEL-DGVVQGP-NNEVQFLTIKALNEWD 401 (549) T ss_pred EEEEECC-CCEEECC-CCCEEEEEHHHHCCCC T ss_conf 9998413-6545078-8860588712402236 No 106 >COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis] Probab=23.50 E-value=47 Score=14.90 Aligned_cols=29 Identities=28% Similarity=0.424 Sum_probs=19.8 Q ss_pred CCCCCCCCCCCHHHHHHH--HHHHHHCCCCC Q ss_conf 257310178748899998--88876265202 Q gi|254780325|r 41 FPGGKIEDGETPEEALTR--ELFEELAIVVK 69 (141) Q Consensus 41 lPGG~ve~gEs~~~a~~R--Ev~EEtgi~~~ 69 (141) .|...|..||+++.|+.| -..++.|+..+ T Consensus 1 M~~v~V~ene~~d~ALrrFKr~~~k~gil~e 31 (67) T COG0828 1 MPQVKVRENEPLDKALRRFKRKVEKEGILRE 31 (67) T ss_pred CCEEEECCCCHHHHHHHHHHHHHHHHHHHHH T ss_conf 9802736997399999999999999869999 No 107 >PRK00270 rpsU 30S ribosomal protein S21; Reviewed Probab=20.52 E-value=61 Score=14.26 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=18.2 Q ss_pred CCCCCCCCCCHHHHHHH--HHHHHHCCC Q ss_conf 57310178748899998--888762652 Q gi|254780325|r 42 PGGKIEDGETPEEALTR--ELFEELAIV 67 (141) Q Consensus 42 PGG~ve~gEs~~~a~~R--Ev~EEtgi~ 67 (141) |+-.|..|||.+.|+.| -..|.+|+- T Consensus 2 ~~V~v~e~E~~e~ALrrFKr~~~k~Gi~ 29 (66) T PRK00270 2 PKVKVRENESIDKALRRFKRKVEKAGIL 29 (66) T ss_pred CEEEECCCCCHHHHHHHHHHHHHHCCCH T ss_conf 8215089985999999999999985449 No 108 >cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu Probab=20.49 E-value=66 Score=14.07 Aligned_cols=28 Identities=32% Similarity=0.481 Sum_probs=13.8 Q ss_pred CEECCCCCCCCCCCHHHHHHHHHHHHHC Q ss_conf 3822573101787488999988887626 Q gi|254780325|r 38 FWEFPGGKIEDGETPEEALTRELFEELA 65 (141) Q Consensus 38 ~W~lPGG~ve~gEs~~~a~~REv~EEtg 65 (141) -|+.||..-...-...-.+.||++++++ T Consensus 111 DWEyP~~~~~~d~~nf~~ll~eLr~~l~ 138 (210) T cd00598 111 DWEYPGAADNSDRENFITLLRELRSALG 138 (210) T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHC T ss_conf 4748999994477899999999999748 Done!