RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780325|ref|YP_003064738.1| mutator MutT protein
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)



>1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR
           {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A*
           1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A*
          Length = 129

 Score =  125 bits (315), Expect = 4e-30
 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%)

Query: 8   KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67
           K L +    +     ++ ++ R  D       EFPGGKIE GETPE+A+ REL EE+ I 
Sbjct: 2   KKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGIT 61

Query: 68  VKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
            + FSL     + + +   H+ + F++   +EG P   EGQ  +W++L  L      PA+
Sbjct: 62  PQHFSL--FEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPAN 119

Query: 128 LSLISFLRK 136
             +I+ L++
Sbjct: 120 EPVIAKLKR 128


>3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica
           serovar typhimurium STR. unknown function; HET: PO4;
           1.75A {Salmonella enterica subsp} PDB: 3n77_A
          Length = 165

 Score =  115 bits (288), Expect = 4e-27
 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 11/132 (8%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGE-FWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
            + C + +  G  LL     ++      W   GG +E GE  EEAL RE+ EEL   +  
Sbjct: 29  TIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLIL 88

Query: 71  FSLVPLTFI---------SHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQN 120
             + P TF              E+ +++   F C      I  + E Q   WV  ++L  
Sbjct: 89  SDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148

Query: 121 YSMLPADLSLIS 132
           Y +  A    ++
Sbjct: 149 YDLNVATRHTLA 160


>3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious
           diseases, hydrolase, structural genomics; 2.10A
           {Bartonella henselae str}
          Length = 158

 Score =  107 bits (268), Expect = 7e-25
 Identities = 65/131 (49%), Positives = 87/131 (66%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
             +L+VVACA+ +   +VLL+ RP+ KS    WEFPGGK+E GETPE +L REL EEL +
Sbjct: 26  SSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
            V+  +L PLTF SH YE FHLLMP + C  ++G+ Q  EGQ L+W+ ++DL  Y M  A
Sbjct: 86  HVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEA 145

Query: 127 DLSLISFLRKH 137
           D  L+  L+  
Sbjct: 146 DKPLVQVLKNF 156


>1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP:
           d.113.1.1
          Length = 156

 Score =  102 bits (256), Expect = 2e-23
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
           +    +     +VLL  + +    G  W   GGK+++GET E+   REL EE  + V   
Sbjct: 6   LYTLVLVLQPQRVLLGMKKRGFGAG-RWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64

Query: 72  SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
             V         E   + +  F     +G P   +  +  W  LD +    M P D
Sbjct: 65  HKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD 120


>2b06_A MUTT/nudix family protein; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP:
           d.113.1.1
          Length = 155

 Score =  101 bits (252), Expect = 7e-23
 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%)

Query: 7   KKILLVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           +  +L   C + +    +V++  R  + +    + FPGG +E+ E   E++ RE++EE  
Sbjct: 5   QLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETG 64

Query: 66  IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125
           + ++   LV +          + ++  +    F G  QS E  ++ WV  D + N ++  
Sbjct: 65  LTIQNPQLVGIKNWPLDTGGRY-IVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAY 123

Query: 126 ADLSLISFLRK 136
             L L+  +  
Sbjct: 124 DMLPLMEMMEA 134


>3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2,
           protein structure initiative; 2.00A {Bacteroides
           fragilis nctc 9343}
          Length = 140

 Score = 99.9 bits (248), Expect = 2e-22
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 6/135 (4%)

Query: 5   NLKKILLVVACAVFEPGGKVLLSCRPKDK--SHGEFWEFPGGKIEDGETPEEALTRELFE 62
           +LK I   V  AV   G K L   R + K       +EFPGGK+E+GE+ +EAL RE+ E
Sbjct: 2   SLKSI--EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIME 59

Query: 63  ELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYS 122
           E+           L  + H Y  F + M  F+CH         E    QW++  ++    
Sbjct: 60  EMDY--VIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAILD 117

Query: 123 MLPADLSLISFLRKH 137
              AD  ++  + + 
Sbjct: 118 WAEADKPIVRKISEQ 132


>3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2,
           protein structure initiative; 2.50A {Bacillus
           halodurans}
          Length = 188

 Score = 99.6 bits (248), Expect = 2e-22
 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 8/128 (6%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL---AIVVK 69
           V   +     +VLL  +P+      +W  PGGK+E GE+  E + RE +EE        +
Sbjct: 6   VTNCIVVDHDQVLLLQKPRRG----WWVAPGGKMEAGESILETVKREYWEETGITVKNPE 61

Query: 70  PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128
              +  +            ++  F     EG         +L+W   D++    M   D 
Sbjct: 62  LKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDK 121

Query: 129 SLISFLRK 136
            +   +  
Sbjct: 122 WIFKHVLH 129


>3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative
           II(PSI II), NYSGXRC, structural genomics; 2.55A
           {Bacillus thuringiensis str}
          Length = 171

 Score = 94.7 bits (235), Expect = 6e-21
 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 6   LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           ++ I+ V    +     KVLL  +   K     W  PGG++E+GET EEA+ RE+ EE  
Sbjct: 18  IENIMQVRVTGILIEDEKVLLVKQ---KVANRDWSLPGGRVENGETLEEAMIREMREETG 74

Query: 66  IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQWVALDDL 118
           + VK   L  L     P     LL   F+    EG                +Q V +++L
Sbjct: 75  LEVKIKKL--LYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINEL 132

Query: 119 QNYSMLPADLSLIS 132
             Y      ++LIS
Sbjct: 133 SYYGFSETFINLIS 146


>3exq_A Nudix family hydrolase; protein structure initiative II(PSI II),
           NYSGXRC, 11180K, structural genomics; 2.00A
           {Lactobacillus brevis atcc 367}
          Length = 161

 Score = 91.0 bits (225), Expect = 8e-20
 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 3/138 (2%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
           + + LV    V +P  + +L     +        FPGG +E GE    A  RE+FEE  +
Sbjct: 7   QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSM--- 123
            +   +            +   L   +    F G  ++    QL W+ +  L   +    
Sbjct: 67  RLSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAAS 126

Query: 124 LPADLSLISFLRKHALHM 141
           LP  L + +      +  
Sbjct: 127 LPEFLQVFTGTASTLVSD 144


>3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix,
           hydrolase, GFG, GFG-1, FGF2AS, structural genomics,
           structural genomics consortium; HET: FLC; 1.70A {Homo
           sapiens}
          Length = 199

 Score = 87.9 bits (217), Expect = 7e-19
 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
           VA AVF+   + +L  + ++K     W+FPGG  E  E   +   RE+FEE  I  +  S
Sbjct: 29  VAGAVFDESTRKILVVQDRNKLKN-MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS 87

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWVALDDLQNYSMLPADL 128
           ++ +         F     + +C      F       E  + +W+ L+DL          
Sbjct: 88  VLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK---TENTT 144

Query: 129 SLISFLRKHALH 140
            + S + +  L+
Sbjct: 145 PITSRVARLLLY 156


>1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer,
           putative nudix hydrolase, structural genomics, unknown
           function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1
           PDB: 1jrk_A 1k26_A
          Length = 156

 Score = 87.2 bits (215), Expect = 1e-18
 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
           ++V   V    GKVLL    +       + +PGG +E  ETP EA+ RE  EE  IVV+P
Sbjct: 1   MIVTSGVLVENGKVLLVKHKRLG----VYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56

Query: 71  FSLVPLTFISHPYEKFHLLMPFF------------VCHCFEGIPQSCEGQQLQWVALDDL 118
                     +  E+   L+                   +       + +  +W+ + ++
Sbjct: 57  IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116

Query: 119 QNYSMLPADLSLISFLRKH 137
                 P    ++S     
Sbjct: 117 DRIETFPNVRKVVSLALST 135


>3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase;
           1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A*
           3ffu_A*
          Length = 153

 Score = 83.8 bits (206), Expect = 1e-17
 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 2/131 (1%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
           K   + V        GK+L+  RP++ S    WEFPGGKIE+GETPEEAL REL EEL I
Sbjct: 18  KGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
             +          +H Y    +L+ F+    ++G P++     L+W+  ++L++ ++  A
Sbjct: 78  EAEV--GELKLACTHSYGDVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKHRNIPEA 135

Query: 127 DLSLISFLRKH 137
           +  ++  + K 
Sbjct: 136 NRKILHKIYKA 146


>2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4}
          Length = 154

 Score = 84.1 bits (207), Expect = 1e-17
 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%)

Query: 8   KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67
            +  V A A+     K+L+  + K K     +   GG I+  E+ E+A+ RE+ EEL + 
Sbjct: 16  TVFGVRATALIVQNHKLLV-TKDKGK-----YYTIGGAIQVNESTEDAVVREVKEELGVK 69

Query: 68  VKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDLQNY 121
            +   L  +           +H +   ++    E  P +     + Q  +W+ LD LQN 
Sbjct: 70  AQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129

Query: 122 SMLPADL-SLISFLRKHALH 140
            ++P  L + +        H
Sbjct: 130 QLVPVFLKTALPDWEGQLRH 149


>3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2,
           protein structure initiative; 1.70A {Chromobacterium
           violaceum}
          Length = 163

 Score = 82.7 bits (204), Expect = 3e-17
 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 12/132 (9%)

Query: 6   LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           L   L   A A+ E    VL++     +     +  PGGK   GE   +AL RE+ EE  
Sbjct: 11  LPSDLARRATAIIEMPDGVLVTASRGGR-----YNLPGGKANRGELRSQALIREIREETG 65

Query: 66  IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125
           + +    ++ L     P+         ++C          E +++  V+  D  +  +  
Sbjct: 66  LRINS--MLYLFDHITPFNAHK----VYLCIAQGQPKPQNEIERIALVSSPDT-DMDLFV 118

Query: 126 ADLSLISFLRKH 137
              +++    + 
Sbjct: 119 EGRAILRRYARL 130


>3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure
           initiative II(PSI II), nysgxrc; 1.76A {Bacillus
           thuringiensis str}
          Length = 153

 Score = 82.1 bits (202), Expect = 5e-17
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 12/127 (9%)

Query: 9   ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
           I      AV +     +L   P  +    +W  P G IE GETPEEA+ RE++EE  + V
Sbjct: 19  IFXPSVAAVIKNEQGEILFQYPGGE----YWSLPAGAIELGETPEEAVVREVWEETGLKV 74

Query: 69  KP------FSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQN 120
           +       F      +     ++   ++  F C    G       E  +LQ+ +L +   
Sbjct: 75  QVKKQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPP 134

Query: 121 YSMLPAD 127
            ++   D
Sbjct: 135 LALPYPD 141


>3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB,
           nucleoside triphosphatase; 2.69A {Escherichia coli apec
           O1}
          Length = 153

 Score = 81.7 bits (201), Expect = 5e-17
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
           V    V    GK L+     +      W  P G +E  ET  EA  REL+EE  I  +P 
Sbjct: 6   VTVACVVHAEGKFLVVEETIN--GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63

Query: 72  SLVPLTFISHPYEKFHLLMPFFVCHCFEG---IPQSCEGQQLQWVALDDLQNYSMLPADL 128
             + +     P +K   L   F     +     P   +    +WV+ +++   S L + L
Sbjct: 64  HFIRMHQWIAP-DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPL 122

Query: 129 SL 130
             
Sbjct: 123 VA 124


>3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18;
           NUDT18, NXR1, nucleotide hydrolase, hydrolase,
           structural genomics; 2.10A {Homo sapiens}
          Length = 156

 Score = 80.9 bits (199), Expect = 9e-17
 Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 11/136 (8%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
           K +  VV         +VLL    K +  G  W  P G++E GET  EAL RE+ EE  +
Sbjct: 17  KNVCYVVLAVFLSEQDEVLLIQEAKRECRG-SWYLPAGRMEPGETIVEALQREVKEEAGL 75

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-----SCEGQQLQWVALDDLQNY 121
             +P +L     +S        +   F+     GI +       E  Q  W     L   
Sbjct: 76  HCEPETL-----LSVEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP 130

Query: 122 SMLPADLSLISFLRKH 137
                 L L+    ++
Sbjct: 131 LRAHDILHLVELAAQY 146


>2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate,
           structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex
           aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A*
          Length = 134

 Score = 80.5 bits (198), Expect = 1e-16
 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 8/129 (6%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
             A  V    G+VLL   P +      W FP G IE GE PEE   RE++EE  +  +  
Sbjct: 5   FSAGGVLFKDGEVLLIKTPSNV-----WSFPKGNIEPGEKPEETAVREVWEETGVKGEIL 59

Query: 72  SLVPLTFISHPYE--KFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128
             +      +  +  +    + +++    EG P+ S E +  ++  + + +       D 
Sbjct: 60  DYIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDK 119

Query: 129 SLISFLRKH 137
            +     K 
Sbjct: 120 EIFEKALKL 128


>3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics,
           joint center for structural genomics, J protein
           structure initiative, PSI; 2.27A {Streptococcus suis}
          Length = 206

 Score = 80.4 bits (198), Expect = 1e-16
 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%)

Query: 9   ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
             L    A+F+   K+LL            W  PGG  +  ++ ++ + +E+ EE  + V
Sbjct: 69  PKLDTRAAIFQ-EDKILLVQENDGL-----WSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122

Query: 69  KPFSLVPL---TFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSML 124
           +   +V +      +       +   F +C    G  Q + E     + +LDDL    + 
Sbjct: 123 EAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLG 182

Query: 125 P 125
            
Sbjct: 183 K 183


>3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2,
           protein structure initiative; 1.70A {Methanosarcina
           mazei}
          Length = 153

 Score = 79.9 bits (196), Expect = 2e-16
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           K  ++ V   +    G+ LL  R ++  ++   W+ PGGK+   E+ +E + RE++EE  
Sbjct: 5   KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETG 64

Query: 66  IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQNYSML 124
           I + P  +     ++    +  ++   F        +  S E  +  WV+L+ +     L
Sbjct: 65  ITMVPGDI--AGQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETL 122

Query: 125 PADL 128
           PA  
Sbjct: 123 PAYF 126


>2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two
           individual domains; HET: APR NAD; 2.60A {Synechocystis
           SP}
          Length = 341

 Score = 79.0 bits (194), Expect = 3e-16
 Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
            +   AV    G VL+  R      G     PGG I+  ET  E + REL EE  + V  
Sbjct: 203 FITTDAVVVQAGHVLMVRRQAKPGLG-LIALPGGFIKQNETLVEGMLRELKEETRLKVPL 261

Query: 71  FSLVPLTFISHPY------EKFHLLMPFFVCHCFEG----IPQSCEGQQLQWVALDDLQN 120
             L      SH +       +   +   +      G    +    + Q+  W++L DL  
Sbjct: 262 PVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYA 321

Query: 121 YSMLPAD 127
                 +
Sbjct: 322 QEEQIYE 328


>1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase,
           riken structural genomics/proteomics initiative, RSGI;
           1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB:
           1vc8_A 1vc9_A*
          Length = 126

 Score = 78.1 bits (192), Expect = 7e-16
 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
               VF    +VLL            W FP G  E GE+ EEA  RE++EE  +  +   
Sbjct: 5   AGGVVFNAKREVLLLRDRMGF-----WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132
            +         +     + +F+                 W + ++ +     P DL L+ 
Sbjct: 60  PLY-PTRYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLE 118

Query: 133 FLRKH 137
              + 
Sbjct: 119 VALER 123


>2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure
           initiative, midwest center for structural genomics,
           MCSG, unknown function; 1.55A {Nitrosomonas europaea}
           SCOP: d.113.1.1
          Length = 153

 Score = 77.6 bits (190), Expect = 1e-15
 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 4/129 (3%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
           V   AV E   K LL      +        P G +E GE+  +A +RE+ EE      P 
Sbjct: 9   VTVAAVIEQDDKYLL-VEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE 67

Query: 72  SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC---EGQQLQWVALDDLQNYSMLPADL 128
            L  +   +        L   F        P         +  W ++D+++    +    
Sbjct: 68  VLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTP 127

Query: 129 SLISFLRKH 137
            ++  +  +
Sbjct: 128 LVMQCIEDY 136


>2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol
           polyphosphate metabolism, structural genomics,
           structural genomics consortium; HET: IHP; 1.25A {Homo
           sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A
          Length = 194

 Score = 77.4 bits (190), Expect = 1e-15
 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 11  LVVACAVF--EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
              AC  F  E   +VLL    +   H + W  PGG +E  E P  A  RE+ EE  +  
Sbjct: 41  KRAACLCFRSESEEEVLLVSSSR---HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKG 97

Query: 69  KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-QSCEGQQLQWVALDDL 118
               LV   F +   +    +    V    E        G++ +W  ++D 
Sbjct: 98  TLGRLVG-IFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDA 147


>1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR
           {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A
          Length = 171

 Score = 76.2 bits (187), Expect = 2e-15
 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 3/111 (2%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68
            VV   +    G++ +  R   KS      +   GG ++ GET EEA  RE  EEL + +
Sbjct: 35  RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 94

Query: 69  KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDL 118
              S  PL   S         M  +             +    +W+  + L
Sbjct: 95  DALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHL 145


>2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA
           turnover, structural genomic consortium, SGC; HET: IMP;
           1.72A {Homo sapiens} PDB: 3cou_A
          Length = 217

 Score = 74.5 bits (182), Expect = 8e-15
 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 22  GKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPFSLVPLTF-I 79
             +L+  R   +       FPGG ++  +   E+ L REL EEL      F +    +  
Sbjct: 65  YAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS 119

Query: 80  SHPYEKFHLLMPFFVCHCFEGIPQSCEG------------QQLQWVALDDLQNYSM-LPA 126
           SH      ++  F+          + E               L  V L  L++    LP 
Sbjct: 120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPT 179

Query: 127 DL 128
            L
Sbjct: 180 FL 181


>3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2,
           protein structure initiative; 2.20A {Listeria innocua}
          Length = 187

 Score = 74.0 bits (181), Expect = 1e-14
 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 17/130 (13%)

Query: 11  LVVACAVF-------EPGGKVLLSCRPKDK------SHGEFWEFPGGKIEDGETPEEALT 57
                 +        +P   +LL  R            G  W  PGG +++ E+ E+A  
Sbjct: 28  YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAE 87

Query: 58  RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWV 113
           REL EE ++   P     +        +  ++   F         E      +  ++   
Sbjct: 88  RELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLF 147

Query: 114 ALDDLQNYSM 123
            + +     +
Sbjct: 148 PMTEALELPL 157


>2fml_A MUTT/nudix family protein; structural genomics, PSI, protein
           structure initiative, midwest center for structural
           genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP:
           a.4.5.68 d.113.1.6
          Length = 273

 Score = 72.9 bits (178), Expect = 2e-14
 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 9/128 (7%)

Query: 8   KILLVVACAVF-----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFE 62
           K  L V   +          KVLL  R         W  PGG +   E+ E+++ RE  E
Sbjct: 37  KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRN-SWALPGGFVNRNESTEDSVLRETKE 95

Query: 63  ELAIVVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQ 119
           E  +V+   ++  L   S P    +  ++   ++    E       + +++ W  L+   
Sbjct: 96  ETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHG 155

Query: 120 NYSMLPAD 127
            +  L  +
Sbjct: 156 QHITLSHE 163


>1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair,
           alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo
           sapiens} SCOP: d.113.1.3
          Length = 155

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 20/132 (15%), Positives = 40/132 (30%)

Query: 7   KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
           +     V       G ++LL  RP        WEFP    E  E  +     +  +  A 
Sbjct: 19  ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAG 78

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126
            +    L  L  + H +    L    +        P +      +W+  ++    ++  A
Sbjct: 79  PLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTA 138

Query: 127 DLSLISFLRKHA 138
              +    +  +
Sbjct: 139 MKKVFRVYQGQS 150


>2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural
           genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5}
          Length = 139

 Score = 72.8 bits (178), Expect = 3e-14
 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%)

Query: 5   NLKKILLVVACAVF----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60
           N+K  LL     +     E    ++L  R   K        PGG +E GE  EEA  RE+
Sbjct: 4   NVKTPLLATDVIIRLWDGENFKGIVLIER---KYPPVGLALPGGFVEVGERVEEAAAREM 60

Query: 61  FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120
            EE  + V+   L+ +        + H++   ++           + ++++   L+++  
Sbjct: 61  REETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPL 120

Query: 121 YSM 123
             +
Sbjct: 121 DKL 123


>2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual
           domains, hydrolase; HET: AMP; 2.30A {Francisella
           tularensis} PDB: 2r5w_B
          Length = 352

 Score = 71.4 bits (174), Expect = 7e-14
 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 12/119 (10%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
            V   A+      +L+  R         W  PGG +E  ET  +A+ RELFEE  I +  
Sbjct: 208 FVTVDALVIVNDHILMVQRKAHPGKD-LWALPGGFLECDETIAQAIIRELFEETNINLTH 266

Query: 71  FSLVPLTFISHPYEK----------FHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118
             L         ++            H+ +  F          +  + + ++W++L   
Sbjct: 267 EQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSN 325


>1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix
           Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP:
           d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A*
          Length = 160

 Score = 70.3 bits (171), Expect = 2e-13
 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 11/129 (8%)

Query: 10  LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
           L+ +   V    G+ LL  R    + G +W  PGG+++  ET E A  R    EL + + 
Sbjct: 18  LVSLDFIVENSRGEFLLGKRTNRPAQG-YWFVPGGRVQKDETLEAAFERLTMAELGLRLP 76

Query: 70  PFSLVPLTFISHPYE--------KFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQ 119
             +        H Y+          H ++  F     E   +    +    +W+  D L 
Sbjct: 77  ITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALL 136

Query: 120 NYSMLPADL 128
               + A+ 
Sbjct: 137 ASDNVHANS 145


>2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay,
           cytoplasm, hydrolase, manganese, metal-binding, mRNA
           processing; NMR {Saccharomyces cerevisiae}
          Length = 146

 Score = 69.9 bits (170), Expect = 2e-13
 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 7   KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           KK + V   A+F E   K+LL    +       W FP GKI   E   +   RE+ EE+ 
Sbjct: 1   KKSIPVRGAAIFNENLSKILLVQGTESD----SWSFPRGKISKDENDIDCCIREVKEEIG 56

Query: 66  IVVKPF-SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG-QQLQWVALDDLQN--- 120
             +  +         +   + + + +   V   F   PQ      +++W     +     
Sbjct: 57  FDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMY 116

Query: 121 ------YSMLPADLSLISFLRKH 137
                 Y +      L  +LR  
Sbjct: 117 KSNIKYYLINSMMRPLSMWLRHQ 139


>2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP
           pyrophosphohydrolase MUTT dihydroneopterin triphosphate
           pyrophosphohydrolase folate biosynthesis; 1.80A
           {Escherichia coli} PDB: 2o5w_A
          Length = 150

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 17/145 (11%)

Query: 1   MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60
           M D   K+ + ++     +   +VL+  R  D     FW+   G +E+GET  +A  RE+
Sbjct: 1   MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPD---FWQSVTGSVEEGETAPQAAMREV 57

Query: 61  FEELAIVVKPFSLVP--------------LTFISHPYEKFHLLMPFFVCHCFEGIPQSCE 106
            EE+ I V    L                L     P    +    F +    E      E
Sbjct: 58  KEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTE 117

Query: 107 GQQLQWVALDDLQNYSMLPADLSLI 131
               +W+        +   ++   I
Sbjct: 118 HLAYKWLDAPAAAALTKSWSNRQAI 142


>1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A
           hydrolase, alpha-beta; NMR {Homo sapiens} SCOP:
           d.113.1.1 PDB: 1xsb_A 1xsc_A*
          Length = 153

 Score = 69.5 bits (169), Expect = 2e-13
 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
           +   V     + LL        H   W  P G +E GE   E   R   EE  I     +
Sbjct: 20  LIPKVDNNAIEFLLLQASDGIHH---WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLT 76

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHC-----FEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127
           ++        Y   +                  I  S E Q  +W+ L++    +     
Sbjct: 77  IIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEM 136

Query: 128 LSLISFLRKH 137
            + +    + 
Sbjct: 137 KAALQEGHQF 146


>2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis,
           structural genomics, PSI, protein structure initiative;
           HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP:
           d.113.1.1
          Length = 148

 Score = 69.2 bits (168), Expect = 3e-13
 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
               V +P    ++  +  +      +  PGG+IE  ET EEA+ RE+ EEL I V+   
Sbjct: 21  AYIIVSKPENNTMVLVQAPNG----AYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC 76

Query: 73  LVPLT----FISHPYEKFHLLMPFFVCHCFEGIPQSCE-GQQLQWVALDDLQNYSMLPAD 127
            +       + +H    ++    F+V + +  + +  E    L WVA ++        + 
Sbjct: 77  YLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSH 136

Query: 128 LSLI-SFLRKHA 138
              +  +L   +
Sbjct: 137 RWAVEKWLAAAS 148


>3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II),
           NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium
           perfringens atcc 13124}
          Length = 197

 Score = 69.1 bits (168), Expect = 3e-13
 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%)

Query: 11  LVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
           L  +         K L+       S    W + GG  ++ +   +   +EL EE  +   
Sbjct: 46  LTSSAFAVNKERNKFLMIHHNIYNS----WAWTGGHSDNEKDQLKVAIKELKEETGVKNP 101

Query: 70  PFSLVPLTFISHPYEKFHLLMPFFV--------------CHCFEGIPQSCEGQQLQWVAL 115
              L     +       H+    +V                    + +  E   + W+  
Sbjct: 102 TPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPF 161

Query: 116 DDLQNYSMLPADLSLI 131
           +++  Y   P  + + 
Sbjct: 162 NEISKYCSEPHMIPIY 177


>2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A
           {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7
           PDB: 2qkm_B*
          Length = 271

 Score = 68.5 bits (167), Expect = 6e-13
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 6/118 (5%)

Query: 7   KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65
           K  + V    +      + +L    K  S    W FP GKI+  E+  +   RE++EE  
Sbjct: 98  KTRIPVRGAIMLDMSMQQCVLVKGWKASSG---WGFPKGKIDKDESDVDCAIREVYEETG 154

Query: 66  IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC-FEGIPQSCEG-QQLQWVALDDLQNY 121
                              +   L              ++ +   +++W  L DL  +
Sbjct: 155 FDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212


>1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich,
           structural genomics, BSGC structure funded by NIH; 1.39A
           {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A
           1su2_A* 1sz3_A*
          Length = 159

 Score = 68.3 bits (166), Expect = 6e-13
 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%)

Query: 5   NLKKILLVVACAVFEPGGKVLLSCR---PKDKSHGEFWEFPGGKIEDGETPEEALTRELF 61
           ++   L      +    G +LL      P        W  P G +EDGE P++A  RE  
Sbjct: 8   HVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREAC 67

Query: 62  EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP----QSCEGQQLQWVALDD 117
           EE  + V+P   +       P +   +L   ++     G       + E  +  +V+ +D
Sbjct: 68  EETGLRVRPVKFLGAYLGRFP-DGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRED 126

Query: 118 LQNY 121
               
Sbjct: 127 FAQL 130


>3e57_A Uncharacterized protein TM1382; structural genomics, nudix
           hydrolase, PSI-2, protein structure initiative; 1.89A
           {Thermotoga maritima}
          Length = 211

 Score = 68.1 bits (166), Expect = 7e-13
 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 10/120 (8%)

Query: 12  VVACAVFEPGGKVLLSCR----PKDKSHGEFWEFPGGKIED------GETPEEALTRELF 61
           V+   V   G +VL++ R     + + H  +    GG + +       E   + L RE+ 
Sbjct: 69  VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVN 128

Query: 62  EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNY 121
           EE+ + ++    + L   S        L   F+        +  +  + + + L++L+ +
Sbjct: 129 EEVDVSLRELEFLGLINSSTTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKF 188


>1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl,
           isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2
           PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A*
           1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A
           2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A*
          Length = 190

 Score = 67.7 bits (165), Expect = 8e-13
 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68
           L  +  +F   G++L++ R   K      W     G  + GE+ E+A+ R    EL + +
Sbjct: 33  LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 92

Query: 69  KPFSLVPLTFISHPYEK----FHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQN 120
            P   +   F     +      + + P F       +     E    QW  L D+ +
Sbjct: 93  TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 149


>3cou_A Nudix motif 16, nucleoside diphosphate-linked moiety X motif 16;
           hydrolase, NUDT16, mRNA decapping, mRNA turnover,
           structural genomics consortium; 1.80A {Homo sapiens}
          Length = 217

 Score = 66.9 bits (163), Expect = 2e-12
 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 20/132 (15%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPF 71
           +          +L+  R   +       FPGG ++  +   E+ L REL EEL      F
Sbjct: 56  MLFGRIPLRYAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAF 110

Query: 72  SLVPLTF-ISHPYEKFHLLMPFFVCH------------CFEGIPQSCEGQQLQWVALDDL 118
            +    +  SH      ++  F+                        E   L  V L  L
Sbjct: 111 RVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTL 170

Query: 119 QN-YSMLPADLS 129
           ++    LP  L 
Sbjct: 171 RDGVGGLPTFLE 182


>1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium
           cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP:
           d.113.1.1 PDB: 1kt9_A*
          Length = 138

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 7/130 (5%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
           +V         + LL        H   W  P G ++ GE   +A  RE  EE  I  +  
Sbjct: 8   LVIYRKLAGKIEFLLLQASYPPHH---WTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64

Query: 72  SLVPLTFISHPYEKF--HLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPAD 127
           ++      +  YE       + +++        +  S E Q  +W  L+D    +     
Sbjct: 65  TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEM 124

Query: 128 LSLISFLRKH 137
            SL+      
Sbjct: 125 GSLLRKFSAF 134


>2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein
           structure initiative; 2.50A {Bacteroides
           thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6
          Length = 226

 Score = 66.0 bits (160), Expect = 3e-12
 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 8/140 (5%)

Query: 8   KILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL 64
              L + C +F   E    +LL  R  + + G  W   GG ++  E+ ++A  R L E  
Sbjct: 11  TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMG-EWSLMGGFVQKDESVDDAAKRVLAELT 69

Query: 65  AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYS 122
            +       V             ++   +           +  +     WV +++L    
Sbjct: 70  GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALI 129

Query: 123 MLPADL--SLISFLRKHALH 140
               ++       +++ A  
Sbjct: 130 FDHPEMVDKAREMMKQKASV 149


>1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed
           4-stranded beta sheet, 2-stranded antiparallel sheet;
           NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A*
          Length = 165

 Score = 64.8 bits (157), Expect = 6e-12
 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 26/129 (20%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK--- 69
           V   +     K+  + R         W+ P G I++GE P  A  REL EE  +      
Sbjct: 17  VGICLMNNDKKIFAASRLDIPD---AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73

Query: 70  -----------PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP---------QSCEGQQ 109
                      P  +     I    +       +F+                 +  E  +
Sbjct: 74  AEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGE 133

Query: 110 LQWVALDDL 118
             WV  + L
Sbjct: 134 WSWVTPEQL 142


>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI
           II), NYSGXRC, 11181H, structural genomics; 2.15A
           {Bifidobacterium adolescentis ATCC15703}
          Length = 364

 Score = 62.9 bits (152), Expect = 2e-11
 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 30/156 (19%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
             +        +V +  RPK       W +P GK+E  ET   A  RE+ EE    VK  
Sbjct: 28  SKSAQEQLDSIEVCIVHRPKYDD----WSWPKGKLEQNETHRHAAVREIGEETGSPVKLG 83

Query: 72  SLVPLTFISHPYEKFHLLMP-----------FFVCHCFEG--------------IPQSCE 106
             +         E                  +++                         E
Sbjct: 84  PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGE 143

Query: 107 GQQLQWVALDDLQNYSMLPADLSLIS-FLRKHALHM 141
              + WV++ + +       D   ++ F+ +     
Sbjct: 144 INDIVWVSVREARKILSHSTDKDTLAVFVDRVQEGA 179


>3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH
           domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A*
           3gz8_A*
          Length = 240

 Score = 62.4 bits (151), Expect = 4e-11
 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 8/138 (5%)

Query: 7   KKILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIED--GETPEEALTRELF 61
           K  LL V   +F   +   KVLL  R      G  W  PGG I++   E+ E+ + R+L 
Sbjct: 19  KAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGL-WGLPGGFIDETCDESLEQTVLRKLA 77

Query: 62  EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC--FEGIPQSCEGQQLQWVALDDLQ 119
           E+ A+V      +     +    +   +   +           Q      ++W  L D+ 
Sbjct: 78  EKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVL 137

Query: 120 NYSMLPADLSLISFLRKH 137
              +    L LI   R+ 
Sbjct: 138 QMPLAFDHLQLIEQARER 155


>1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A
           {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A*
           2a8p_A* 2a8r_A* 2a8s_A*
          Length = 212

 Score = 62.0 bits (150), Expect = 5e-11
 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 9/113 (7%)

Query: 13  VACAVFEPGGKVLLSCRPKD------KSHGEFWEFPGGKIEDGETP-EEALTRELFEELA 65
               +  P    L    P                FPGG ++  +   EE L REL EEL 
Sbjct: 36  CHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELG 95

Query: 66  IVVKPFSLV-PLTFISHPYEKFHLLM-PFFVCHCFEGIPQSCEGQQLQWVALD 116
             +    +       S   E     +  F++        +  E + +      
Sbjct: 96  PALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHG 148


>3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II),
           NYSGXRC, structural genomics; 2.02A {Clostridium
           perfringens atcc 13124}
          Length = 159

 Score = 61.5 bits (148), Expect = 6e-11
 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 25/141 (17%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK-- 69
                      KVLL    K K         GG IE  E PEEA  RE  EE  + V   
Sbjct: 7   FTVSVFIVCKDKVLLHLHKKAK----KMLPLGGHIEVNELPEEACIREAKEEAGLNVTLY 62

Query: 70  ------------PFSLVPLTFISHPYEKFHLLMPFFVCHCF-------EGIPQSCEGQQL 110
                             L    H            +   +       E  P+  E + L
Sbjct: 63  NPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKIL 122

Query: 111 QWVALDDLQNYSMLPADLSLI 131
           +W + +DL+N   +  ++ ++
Sbjct: 123 KWYSKEDLKNAHNIQENILVM 143


>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI,
           protein structure initiative, joint center for
           structural genomics; HET: MSE; 2.20A {Escherichia coli
           K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
          Length = 269

 Score = 58.1 bits (140), Expect = 7e-10
 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 10/131 (7%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
               V       +L  +     +        G +E GET E+A+ RE+ EE  I VK   
Sbjct: 141 PCIIVAIRRDDSILLAQHTRHRN-GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR 199

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPADLSL 130
                  S P+     LM  F+     G  +    E  +  W   DDL     LP   ++
Sbjct: 200 ----YVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL---LPPPGTV 252

Query: 131 ISFLRKHALHM 141
              L +  + M
Sbjct: 253 ARRLIEDTVAM 263


>2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc;
           NMR {Escherichia coli} PDB: 2kdw_A
          Length = 164

 Score = 57.4 bits (138), Expect = 1e-09
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 24/126 (19%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
           V   +    G+V+   R   +     W+FP G I  GE+ E+A+ RELFEE+ +  K   
Sbjct: 11  VGIVICNRQGQVMW-ARRFGQ---HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVR 66

Query: 73  L-------------VPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQW 112
           +               L               +F+     G          + E    +W
Sbjct: 67  ILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRW 126

Query: 113 VALDDL 118
           V+    
Sbjct: 127 VSYWYP 132


>1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans,
           hydrolase; 1.70A {Deinococcus radiodurans} SCOP:
           d.113.1.1 PDB: 1nqy_A
          Length = 194

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%)

Query: 12  VVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70
           V+     E   +VLL+ R  +  +H     FPGG ++ GETP +A  RE  EE+A+   P
Sbjct: 38  VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVAL--DP 95

Query: 71  FSLVPLTFISHPYEKFHLLMPFFVC----HCFEGIPQSCEGQQLQWVALDDLQN 120
            ++  L  +   +      +   +        + +  + E  Q+    L +L+ 
Sbjct: 96  AAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA 149


>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA
           glycosylase, transition state analog, DNA repair; HET:
           NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A*
           1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A*
          Length = 369

 Score = 55.5 bits (133), Expect = 4e-09
 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 6/126 (4%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
               + +  G+VL+  R         WEFP  + +  +  E  L + + E+  + V+   
Sbjct: 243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKE-KLEQMVGEQYGLQVE--L 299

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132
             P+    H +      +  F      G P     +  +    D+L+ Y+   +   +  
Sbjct: 300 TEPIVSFEHAFSHLVWQLTVFPGRLVHGGP---VEEPYRLAPEDELKAYAFPVSHQRVWR 356

Query: 133 FLRKHA 138
             ++ A
Sbjct: 357 EYKEWA 362


>1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase;
           HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB:
           1qvj_A*
          Length = 292

 Score = 52.3 bits (125), Expect = 4e-08
 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 19  EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF 78
           +   + +   R         W  PGG ++ GE     L RE  EE    ++  S      
Sbjct: 136 KHILQFVAIKRK----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREI 191

Query: 79  ISHPYEKFH 87
               ++ F 
Sbjct: 192 EEKLHKLFS 200


>1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine
           diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium
           tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A*
           1mqw_A* 1mr2_A*
          Length = 207

 Score = 51.5 bits (123), Expect = 6e-08
 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIED-GETPEEALTRELFEELAIVVKPF 71
           VA    +  G + +  + +       WE P G ++  GE P     REL EE+ +    +
Sbjct: 46  VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105

Query: 72  SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDL 118
            ++     +  +  E   +   +      E              + W  + + 
Sbjct: 106 QVLVDLDTAPGFSDESVRV---YLATGLREVGRPEAHHEEADMTMGWYPIAEA 155


>2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural
           genomics, PSI, protein structure initiative; HET: MSE;
           2.00A {Escherichia coli K12} SCOP: d.113.1.2
          Length = 180

 Score = 51.7 bits (123), Expect = 6e-08
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSHGEFWE--FPGGKIEDGETPEEALTRELFEELAIVV 68
                 V +  GK+L+  R + K           GG ++  E   E+  RE  EEL I  
Sbjct: 38  RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAG 97

Query: 69  KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQNY--SMLP 125
            P             +   +    F C        Q  E  ++ W+  +++        P
Sbjct: 98  VP--FAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTP 155

Query: 126 ADLSLIS-FLRKHA 138
             L  ++ +++++A
Sbjct: 156 DSLKALALWMKRNA 169


>1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT
           family, riken structural genomics/proteomics initiative,
           RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP:
           d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A
           1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A
          Length = 170

 Score = 50.1 bits (119), Expect = 2e-07
 Identities = 21/105 (20%), Positives = 36/105 (34%)

Query: 14  ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSL 73
              +    G++L   + +        E P G IE GE P EA  REL E+  +      L
Sbjct: 37  VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYL 96

Query: 74  VPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDL 118
                     ++   +         E  P   E  ++ W+  ++ 
Sbjct: 97  FSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEA 141


>2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase;
           2.00A {Deinococcus radiodurans}
          Length = 145

 Score = 49.8 bits (118), Expect = 2e-07
 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 5/109 (4%)

Query: 13  VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72
           V        G+ +L  + +        E   G +E GE    A  REL EE+        
Sbjct: 8   VFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGG--AASE 65

Query: 73  LVPLTFISHPYEKFHLLMPFFVCHCF---EGIPQSCEGQQLQWVALDDL 118
            VPL           ++    +           +  E  +   + L ++
Sbjct: 66  WVPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEV 114


>3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3
           family, structural genomics, protein structure
           initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc
           11170}
          Length = 300

 Score = 48.1 bits (114), Expect = 6e-07
 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 16/144 (11%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69
           +           + +  R  DKS   G+      G      +  + L +E  EE  +   
Sbjct: 123 LNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA 182

Query: 70  PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI--------PQSCEGQQLQWVALDDL--- 118
                          +    +       ++              E           +   
Sbjct: 183 LARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242

Query: 119 --QNYSMLP-ADLSLISFLRKHAL 139
                +     +L++I F  +H L
Sbjct: 243 VRTTEAFKFNVNLTVIDFAIRHGL 266


>1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix
           fold, hydrolase; 1.90A {Escherichia coli} SCOP:
           d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A
          Length = 209

 Score = 47.7 bits (113), Expect = 8e-07
 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 18/121 (14%)

Query: 12  VVACAVFEPGGKVLL--SCRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
            V         +V+L    R             E   G IE+GE+ E+   RE  EE  +
Sbjct: 60  AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119

Query: 67  VVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQ-------QLQWVALDD 117
           +VK    V     S     E+  +     V            G        ++  V+ + 
Sbjct: 120 IVKRTKPVLSFLASPGGTSERSSI----MVGEVDATTASGIHGLADENEDIRVHVVSREQ 175

Query: 118 L 118
            
Sbjct: 176 A 176


>2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose
           pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo
           sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A
          Length = 212

 Score = 45.9 bits (108), Expect = 3e-06
 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%)

Query: 12  VVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68
           V    V +       ++L  + +    G   EFP G I+DGETPE A  REL EE     
Sbjct: 64  VAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKG 123

Query: 69  KPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQ---------LQWVALDD 117
                 P   +         H               ++   +          +  +  +D
Sbjct: 124 DIAECSPAVCMDPGLSNCTIH----IVTVTINGDDAENARPKPKPGDGEFVEVISLPKND 179

Query: 118 L 118
           L
Sbjct: 180 L 180


>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein
           structure initiative, midwest center for structural
           genomics; 2.00A {Nitrosomonas europaea atcc 19718}
          Length = 189

 Score = 45.7 bits (107), Expect = 4e-06
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 6/108 (5%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
           V+   + E   KVLL  R      G  W  P G +E+ ET  +   RE  EE    V+  
Sbjct: 41  VIVGCIPEWENKVLLCKRAIAPYRG-KWTLPAGFMENNETLVQGAARETLEEANARVEIR 99

Query: 72  SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118
            L    +  +       +   F     +       E  +++     ++
Sbjct: 100 EL----YAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEI 143


>2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD,
           hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A
           {Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A*
          Length = 182

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 2/111 (1%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
                     G  LL  + +  +     E P GK+++GETPE A  REL EE+    +  
Sbjct: 43  ASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETL 102

Query: 72  SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120
             +P       +    FH  +            +  E  +   + L ++  
Sbjct: 103 IPLPSFHPQPSFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYA 153


>1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A
           {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A*
          Length = 198

 Score = 45.5 bits (107), Expect = 5e-06
 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 3/111 (2%)

Query: 12  VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71
                V      ++L       +      F  G I+ GE+  EA  REL EE+       
Sbjct: 50  EAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109

Query: 72  SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQ--QLQWVALDDLQN 120
           + +    ++ P      +        +    +  E +        L  + +
Sbjct: 110 TFLKKLSMA-PSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMD 159


>2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein;
           1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A*
          Length = 235

 Score = 44.8 bits (105), Expect = 6e-06
 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 20/130 (15%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETP---------EEALTRE 59
              +  +F    K+LL  R   K    G F                         A  R 
Sbjct: 60  RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRR 119

Query: 60  LFEELAIVVKPFSLVPLTFISHPYEKF---HLLMPFFVCHCFEG------IPQSCEGQQL 110
           L  EL I ++      + +++  + K     +     + +           P   E +  
Sbjct: 120 LKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSY 179

Query: 111 QWVALDDLQN 120
            +V+ ++L+ 
Sbjct: 180 CYVSKEELKE 189


>2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis,
           cholesterol biosynthesis, isoprene biosynthesis, lipid
           synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens}
          Length = 246

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 20/130 (15%)

Query: 11  LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETP---------EEALTRE 59
              +  +F    ++L+  R   K     ++                         A  R 
Sbjct: 71  RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRR 130

Query: 60  LFEEL---AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCF----EGIPQSC--EGQQL 110
           L  EL      + P  +V +T   H  +   +     +C+               E + +
Sbjct: 131 LQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSI 190

Query: 111 QWVALDDLQN 120
            +++ ++L  
Sbjct: 191 LYLSQEELWE 200


>1viu_A ADP-ribose pyrophosphatase; structural genomics, hydrolase; 2.40A
           {Escherichia coli} SCOP: d.113.1.1
          Length = 203

 Score = 33.5 bits (76), Expect = 0.019
 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 13/118 (11%)

Query: 12  VVACAVFEPGGKVLLS--CRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66
                       V+L    R     + +           + D + PE  + +E  EE   
Sbjct: 50  ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGY 109

Query: 67  VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC------EGQQLQWVALDDL 118
            V     +   ++S        L+ FF+    +    +       E  ++  +     
Sbjct: 110 EVGEVRKLFELYMSP--GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQA 165


>3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation,
          RNA-binding, structural genomics consortium, SGC, RNA
          degradation; 1.70A {Homo sapiens}
          Length = 214

 Score = 32.9 bits (75), Expect = 0.031
 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%)

Query: 41 FPGGKIEDG-ETPEEALTRELFEELAIV 67
          FPGG ++    + E+ L R L   L  +
Sbjct: 58 FPGGFVDRRFWSLEDGLNRVLGLGLGCL 85


>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices,
           helix-hairpin-helix motif, iron-sulfur cluste hydrolase;
           2.30A {Homo sapiens}
          Length = 287

 Score = 30.1 bits (67), Expect = 0.19
 Identities = 7/37 (18%), Positives = 8/37 (21%)

Query: 6   LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFP 42
           L     V  CA       + L              FP
Sbjct: 245 LSGSPDVEECAPNTGQCHLCLPPSEPWDQTLGVVNFP 281


>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
           procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
           sapiens}
          Length = 1263

 Score = 28.2 bits (62), Expect = 0.71
 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 7   KKILLVV-------ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRE 59
            + LL++           F+   ++LL+ R K  +           +E     E+ L  E
Sbjct: 242 PRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL--E 299

Query: 60  LFEELA 65
           +     
Sbjct: 300 ILSLFV 305


>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus
          musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A
          1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B
          2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A
          3byy_A 3byt_A 3bzd_A 1u3h_B ...
          Length = 238

 Score = 26.1 bits (56), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 17 VFEPGGKVLLSCRPKDKSHGEFW 39
          V   GGKV LSC+  +  +  +W
Sbjct: 10 VAVTGGKVTLSCQQTNNHNNMYW 32


>3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET:
          SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A*
          Length = 155

 Score = 25.6 bits (56), Expect = 4.4
 Identities = 9/25 (36%), Positives = 11/25 (44%)

Query: 35 HGEFWEFPGGKIEDGETPEEALTRE 59
                F  GK++DGE   E L  E
Sbjct: 58 ALWLHNFSAGKVQDGEKYIEELFLE 82


>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG,
           oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A
          Length = 424

 Score = 25.4 bits (55), Expect = 4.7
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 22/94 (23%)

Query: 21  GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVP----- 75
           GGK  + C P+  S GE                E L+R     ++ +V P   +P     
Sbjct: 114 GGKGGIICDPRTMSFGEL---------------ERLSRGYVRAISQIVGPTKDIPAPDVY 158

Query: 76  --LTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG 107
                ++   +++  L  F       G P    G
Sbjct: 159 TNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGG 192


>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold,
          diabody, immune system; 2.42A {Mus musculus} PDB:
          1bwm_A
          Length = 238

 Score = 25.2 bits (54), Expect = 5.0
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)

Query: 17 VFEPGGKVLLSCRPKDKSHGEFW--EFPGGKIE 47
          V   GGKV LSC   +  +  +W  +  G  + 
Sbjct: 11 VAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLR 43


>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C,
           northeast structural genomics consortium, NESG, C PSI-2;
           2.00A {Corynebacterium glutamicum}
          Length = 516

 Score = 25.1 bits (54), Expect = 5.7
 Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 3/121 (2%)

Query: 1   MIDVNLKKILLVVACAVFEPGGKVLL---SCRPKDKSHGEFWEFPGGKIEDGETPEEALT 57
           + +  +     +            ++   +        G+       +  D    E    
Sbjct: 225 IRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRD 284

Query: 58  RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDD 117
            E     A           T ++       L +   +     G           W+A+DD
Sbjct: 285 WEHATAPASDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDD 344

Query: 118 L 118
           L
Sbjct: 345 L 345


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl reductase,
            beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
            cerevisiae}
          Length = 2006

 Score = 25.3 bits (55), Expect = 5.8
 Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 4/30 (13%)

Query: 110  LQWVALDDLQNYSMLPADLSLISFLRKHAL 139
            ++  A +DL++  ++PAD +       H+L
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG----HSL 1764


>2ial_A CD4+ T cell receptor E8 alpha chain; X-RAY crystallography, major
          histocompatibility complex, T cell stimulation,
          melanoma, tumor antigen; 1.92A {Homo sapiens} PDB:
          2iam_C 2ian_D
          Length = 202

 Score = 24.8 bits (53), Expect = 6.9
 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)

Query: 19 EPGGKVLLSCRPKDKSHGEFW--EFPGGK 45
          + G    L C   D  +   W  + P G+
Sbjct: 13 QEGANSTLRCNFSDSVNNLQWFHQNPWGQ 41


>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold,
           glycosyltransferase, GT55, GDP, cytoplasm, magnesium,
           transferase; HET: GDP; 2.00A {Pyrococcus horikoshii}
           PDB: 2zu7_A* 2zu8_A*
          Length = 394

 Score = 24.5 bits (53), Expect = 9.3
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%)

Query: 17  VFEPGGKVL-LSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV----VKPF 71
            F+  G+V  ++    +    E   F    +  G   E A+T +L E L       ++P+
Sbjct: 214 YFKKWGRVSEITNHYLNLLVSEHTAFETTIMVTGNAGEHAMTMKLAEILPFSTGYSIEPY 273

Query: 72  SLV 74
            +V
Sbjct: 274 EIV 276


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.142    0.452 

Gapped
Lambda     K      H
   0.267   0.0523    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,344,922
Number of extensions: 61520
Number of successful extensions: 327
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 79
Length of query: 141
Length of database: 5,693,230
Length adjustment: 83
Effective length of query: 58
Effective length of database: 3,680,978
Effective search space: 213496724
Effective search space used: 213496724
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.3 bits)