RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62] (141 letters) >1mut_A MUTT, nucleoside triphosphate pyrophosphohydrolase; DNA repair; NMR {Escherichia coli} SCOP: d.113.1.1 PDB: 1ppx_A* 1pun_A* 1puq_A* 1pus_A* 1tum_A* 3a6s_A* 3a6t_A* 3a6u_A* 3a6v_A* Length = 129 Score = 125 bits (315), Expect = 4e-30 Identities = 42/129 (32%), Positives = 68/129 (52%), Gaps = 2/129 (1%) Query: 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67 K L + + ++ ++ R D EFPGGKIE GETPE+A+ REL EE+ I Sbjct: 2 KKLQIAVGIIRNENNEIFITRRAADAHMANKLEFPGGKIEMGETPEQAVVRELQEEVGIT 61 Query: 68 VKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127 + FSL + + + H+ + F++ +EG P EGQ +W++L L PA+ Sbjct: 62 PQHFSL--FEKLEYEFPDRHITLWFWLVERWEGEPWGKEGQPGEWMSLVGLNADDFPPAN 119 Query: 128 LSLISFLRK 136 +I+ L++ Sbjct: 120 EPVIAKLKR 128 >3oga_A Nucleoside triphosphatase NUDI; salmonella enterica subsp. enterica serovar typhimurium STR. unknown function; HET: PO4; 1.75A {Salmonella enterica subsp} PDB: 3n77_A Length = 165 Score = 115 bits (288), Expect = 4e-27 Identities = 33/132 (25%), Positives = 52/132 (39%), Gaps = 11/132 (8%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGE-FWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70 + C + + G LL ++ W GG +E GE EEAL RE+ EEL + Sbjct: 29 TIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLIL 88 Query: 71 FSLVPLTFI---------SHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQN 120 + P TF E+ +++ F C I + E Q WV ++L Sbjct: 89 SDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSANRDICINDEFQDYAWVKPEELAL 148 Query: 121 YSMLPADLSLIS 132 Y + A ++ Sbjct: 149 YDLNVATRHTLA 160 >3hhj_A Mutator MUTT protein; niaid, ssgcid, decode, UW, SBRI, infectious diseases, hydrolase, structural genomics; 2.10A {Bartonella henselae str} Length = 158 Score = 107 bits (268), Expect = 7e-25 Identities = 65/131 (49%), Positives = 87/131 (66%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 +L+VVACA+ + +VLL+ RP+ KS WEFPGGK+E GETPE +L REL EEL + Sbjct: 26 SSLLIVVACALLDQDNRVLLTQRPEGKSLAGLWEFPGGKVEQGETPEASLIRELEEELGV 85 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126 V+ +L PLTF SH YE FHLLMP + C ++G+ Q EGQ L+W+ ++DL Y M A Sbjct: 86 HVQADNLFPLTFASHGYETFHLLMPLYFCSHYKGVAQGREGQNLKWIFINDLDKYPMPEA 145 Query: 127 DLSLISFLRKH 137 D L+ L+ Sbjct: 146 DKPLVQVLKNF 156 >1iry_A HMTH1; nudix motif(G37-L59), hydrolase; NMR {Homo sapiens} SCOP: d.113.1.1 Length = 156 Score = 102 bits (256), Expect = 2e-23 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 1/116 (0%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 + + +VLL + + G W GGK+++GET E+ REL EE + V Sbjct: 6 LYTLVLVLQPQRVLLGMKKRGFGAG-RWNGFGGKVQEGETIEDGARRELQEESGLTVDAL 64 Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127 V E + + F +G P + + W LD + M P D Sbjct: 65 HKVGQIVFEFVGEPELMDVHVFCTDSIQGTPVESDEMRPCWFQLDQIPFKDMWPDD 120 >2b06_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.40A {Streptococcus pneumoniae} SCOP: d.113.1.1 Length = 155 Score = 101 bits (252), Expect = 7e-23 Identities = 28/131 (21%), Positives = 59/131 (45%), Gaps = 2/131 (1%) Query: 7 KKILLVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 + +L C + + +V++ R + + + FPGG +E+ E E++ RE++EE Sbjct: 5 QLTILTNICLIEDLETQRVVMQYRAPENNRWSGYAFPGGHVENDEAFAESVIREIYEETG 64 Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125 + ++ LV + + ++ + F G QS E ++ WV D + N ++ Sbjct: 65 LTIQNPQLVGIKNWPLDTGGRY-IVICYKATEFSGTLQSSEEGEVSWVQKDQIPNLNLAY 123 Query: 126 ADLSLISFLRK 136 L L+ + Sbjct: 124 DMLPLMEMMEA 134 >3gwy_A Putative CTP pyrophosphohydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343} Length = 140 Score = 99.9 bits (248), Expect = 2e-22 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 6/135 (4%) Query: 5 NLKKILLVVACAVFEPGGKVLLSCRPKDK--SHGEFWEFPGGKIEDGETPEEALTRELFE 62 +LK I V AV G K L R + K +EFPGGK+E+GE+ +EAL RE+ E Sbjct: 2 SLKSI--EVVAAVIRLGEKYLCVQRGQTKFSYTSFRYEFPGGKVEEGESLQEALQREIME 59 Query: 63 ELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYS 122 E+ L + H Y F + M F+CH E QW++ ++ Sbjct: 60 EMDY--VIEVGEKLLTVHHTYPDFEITMHAFLCHPVGQRYVLKEHIAAQWLSTREMAILD 117 Query: 123 MLPADLSLISFLRKH 137 AD ++ + + Sbjct: 118 WAEADKPIVRKISEQ 132 >3fk9_A Mutator MUTT protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.50A {Bacillus halodurans} Length = 188 Score = 99.6 bits (248), Expect = 2e-22 Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 8/128 (6%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL---AIVVK 69 V + +VLL +P+ +W PGGK+E GE+ E + RE +EE + Sbjct: 6 VTNCIVVDHDQVLLLQKPRRG----WWVAPGGKMEAGESILETVKREYWEETGITVKNPE 61 Query: 70 PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128 + + ++ F EG +L+W D++ M D Sbjct: 62 LKGIFSMVIFDEGKIVSEWMLFTFKATEHEGEMLKQSPEGKLEWKKKDEVLELPMAAGDK 121 Query: 129 SLISFLRK 136 + + Sbjct: 122 WIFKHVLH 129 >3id9_A MUTT/nudix family protein; hydrolase, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.55A {Bacillus thuringiensis str} Length = 171 Score = 94.7 bits (235), Expect = 6e-21 Identities = 39/134 (29%), Positives = 57/134 (42%), Gaps = 12/134 (8%) Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 ++ I+ V + KVLL + K W PGG++E+GET EEA+ RE+ EE Sbjct: 18 IENIMQVRVTGILIEDEKVLLVKQ---KVANRDWSLPGGRVENGETLEEAMIREMREETG 74 Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQWVALDDL 118 + VK L L P LL F+ EG +Q V +++L Sbjct: 75 LEVKIKKL--LYVCDKPDASPSLLHITFLLERIEGEITLPSNEFDHNPIHDVQMVPINEL 132 Query: 119 QNYSMLPADLSLIS 132 Y ++LIS Sbjct: 133 SYYGFSETFINLIS 146 >3exq_A Nudix family hydrolase; protein structure initiative II(PSI II), NYSGXRC, 11180K, structural genomics; 2.00A {Lactobacillus brevis atcc 367} Length = 161 Score = 91.0 bits (225), Expect = 8e-20 Identities = 28/138 (20%), Positives = 49/138 (35%), Gaps = 3/138 (2%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 + + LV V +P + +L + FPGG +E GE A RE+FEE + Sbjct: 7 QPVELVTMVMVTDPETQRVLVEDKVNVPWKAGHSFPGGHVEVGEPCATAAIREVFEETGL 66 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSM--- 123 + + + L + F G ++ QL W+ + L + Sbjct: 67 RLSGVTFCGTCEWFDDDRQHRKLGLLYRASNFTGTLKASAEGQLSWLPITALTRENSAAS 126 Query: 124 LPADLSLISFLRKHALHM 141 LP L + + + Sbjct: 127 LPEFLQVFTGTASTLVSD 144 >3h95_A Nucleoside diphosphate-linked moiety X motif 6; NUDT6, nudix, hydrolase, GFG, GFG-1, FGF2AS, structural genomics, structural genomics consortium; HET: FLC; 1.70A {Homo sapiens} Length = 199 Score = 87.9 bits (217), Expect = 7e-19 Identities = 31/132 (23%), Positives = 54/132 (40%), Gaps = 8/132 (6%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 VA AVF+ + +L + ++K W+FPGG E E + RE+FEE I + S Sbjct: 29 VAGAVFDESTRKILVVQDRNKLKN-MWKFPGGLSEPEEDIGDTAVREVFEETGIKSEFRS 87 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWVALDDLQNYSMLPADL 128 ++ + F + +C F E + +W+ L+DL Sbjct: 88 VLSIRQQHTNPGAFGKSDMYIICRLKPYSFTINFCQEECLRCEWMDLNDLAK---TENTT 144 Query: 129 SLISFLRKHALH 140 + S + + L+ Sbjct: 145 PITSRVARLLLY 156 >1k2e_A Nudix homolog; nudix/MUTT-like fold, mixed alpha/beta, dimer, putative nudix hydrolase, structural genomics, unknown function; 1.80A {Pyrobaculum aerophilum} SCOP: d.113.1.1 PDB: 1jrk_A 1k26_A Length = 156 Score = 87.2 bits (215), Expect = 1e-18 Identities = 29/139 (20%), Positives = 50/139 (35%), Gaps = 16/139 (11%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70 ++V V GKVLL + + +PGG +E ETP EA+ RE EE IVV+P Sbjct: 1 MIVTSGVLVENGKVLLVKHKRLG----VYIYPGGHVEHNETPIEAVKREFEEETGIVVEP 56 Query: 71 FSLVPLTFISHPYEKFHLLMPFF------------VCHCFEGIPQSCEGQQLQWVALDDL 118 + E+ L+ + + + +W+ + ++ Sbjct: 57 IGFTYGIIDENAVERPMPLVILEEVVKYPEETHIHFDLIYLVKRVGGDLKNGEWIDVREI 116 Query: 119 QNYSMLPADLSLISFLRKH 137 P ++S Sbjct: 117 DRIETFPNVRKVVSLALST 135 >3ees_A Probable pyrophosphohydrolase; nudix, RNA pyrophosphohydrolase; 1.90A {Bdellovibrio bacteriovorus} PDB: 3eeu_A 3ef5_A* 3ffu_A* Length = 153 Score = 83.8 bits (206), Expect = 1e-17 Identities = 43/131 (32%), Positives = 70/131 (53%), Gaps = 2/131 (1%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 K + V GK+L+ RP++ S WEFPGGKIE+GETPEEAL REL EEL I Sbjct: 18 KGHWIPVVAGFLRKDGKILVGQRPENNSLAGQWEFPGGKIENGETPEEALARELNEELGI 77 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126 + +H Y +L+ F+ ++G P++ L+W+ ++L++ ++ A Sbjct: 78 EAEV--GELKLACTHSYGDVGILILFYEILYWKGEPRAKHHMMLEWIHPEELKHRNIPEA 135 Query: 127 DLSLISFLRKH 137 + ++ + K Sbjct: 136 NRKILHKIYKA 146 >2pqv_A MUTT/nudix family protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.63A {Streptococcus pneumoniae TIGR4} Length = 154 Score = 84.1 bits (207), Expect = 1e-17 Identities = 32/140 (22%), Positives = 58/140 (41%), Gaps = 13/140 (9%) Query: 8 KILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV 67 + V A A+ K+L+ + K K + GG I+ E+ E+A+ RE+ EEL + Sbjct: 16 TVFGVRATALIVQNHKLLV-TKDKGK-----YYTIGGAIQVNESTEDAVVREVKEELGVK 69 Query: 68 VKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDLQNY 121 + L + +H + ++ E P + + Q +W+ LD LQN Sbjct: 70 AQAGQLAFVVENRFEVDGVSYHNIEFHYLVDLLEDAPLTMQEDEKRQPCEWIDLDKLQNI 129 Query: 122 SMLPADL-SLISFLRKHALH 140 ++P L + + H Sbjct: 130 QLVPVFLKTALPDWEGQLRH 149 >3f13_A Putative nudix hydrolase family member; structural genomics, PSI-2, protein structure initiative; 1.70A {Chromobacterium violaceum} Length = 163 Score = 82.7 bits (204), Expect = 3e-17 Identities = 25/132 (18%), Positives = 49/132 (37%), Gaps = 12/132 (9%) Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 L L A A+ E VL++ + + PGGK GE +AL RE+ EE Sbjct: 11 LPSDLARRATAIIEMPDGVLVTASRGGR-----YNLPGGKANRGELRSQALIREIREETG 65 Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLP 125 + + ++ L P+ ++C E +++ V+ D + + Sbjct: 66 LRINS--MLYLFDHITPFNAHK----VYLCIAQGQPKPQNEIERIALVSSPDT-DMDLFV 118 Query: 126 ADLSLISFLRKH 137 +++ + Sbjct: 119 EGRAILRRYARL 130 >3eds_A MUTT/nudix family protein; MUT/nudix protein, protein structure initiative II(PSI II), nysgxrc; 1.76A {Bacillus thuringiensis str} Length = 153 Score = 82.1 bits (202), Expect = 5e-17 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 12/127 (9%) Query: 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68 I AV + +L P + +W P G IE GETPEEA+ RE++EE + V Sbjct: 19 IFXPSVAAVIKNEQGEILFQYPGGE----YWSLPAGAIELGETPEEAVVREVWEETGLKV 74 Query: 69 KP------FSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQN 120 + F + ++ ++ F C G E +LQ+ +L + Sbjct: 75 QVKKQKGVFGGKEYRYTYSNGDEVEYIVVVFECEVTSGELRSIDGESLKLQYFSLSEKPP 134 Query: 121 YSMLPAD 127 ++ D Sbjct: 135 LALPYPD 141 >3dku_A Putative phosphohydrolase; nudix hydrolase, ORF153, YMFB, nucleoside triphosphatase; 2.69A {Escherichia coli apec O1} Length = 153 Score = 81.7 bits (201), Expect = 5e-17 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 6/122 (4%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 V V GK L+ + W P G +E ET EA REL+EE I +P Sbjct: 6 VTVACVVHAEGKFLVVEETIN--GKALWNQPAGHLEADETLVEAAARELWEETGISAQPQ 63 Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEG---IPQSCEGQQLQWVALDDLQNYSMLPADL 128 + + P +K L F + P + +WV+ +++ S L + L Sbjct: 64 HFIRMHQWIAP-DKTPFLRFLFAIELEQICPTQPHDSDIDCCRWVSAEEILQASNLRSPL 122 Query: 129 SL 130 Sbjct: 123 VA 124 >3gg6_A Nudix motif 18, nucleoside diphosphate-linked moiety X motif 18; NUDT18, NXR1, nucleotide hydrolase, hydrolase, structural genomics; 2.10A {Homo sapiens} Length = 156 Score = 80.9 bits (199), Expect = 9e-17 Identities = 34/136 (25%), Positives = 50/136 (36%), Gaps = 11/136 (8%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 K + VV +VLL K + G W P G++E GET EAL RE+ EE + Sbjct: 17 KNVCYVVLAVFLSEQDEVLLIQEAKRECRG-SWYLPAGRMEPGETIVEALQREVKEEAGL 75 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQ-----SCEGQQLQWVALDDLQNY 121 +P +L +S + F+ GI + E Q W L Sbjct: 76 HCEPETL-----LSVEERGPSWVRFVFLARPTGGILKTSKEADAESLQAAWYPRTSLPTP 130 Query: 122 SMLPADLSLISFLRKH 137 L L+ ++ Sbjct: 131 LRAHDILHLVELAAQY 146 >2pbt_A AP4A hydrolase; nudix protein, diadenosine polyphosphate, structural genomics, NPPSFA; HET: PGE; 1.80A {Aquifex aeolicus} PDB: 2pq1_A* 3i7u_A* 3i7v_A* Length = 134 Score = 80.5 bits (198), Expect = 1e-16 Identities = 29/129 (22%), Positives = 51/129 (39%), Gaps = 8/129 (6%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 A V G+VLL P + W FP G IE GE PEE RE++EE + + Sbjct: 5 FSAGGVLFKDGEVLLIKTPSNV-----WSFPKGNIEPGEKPEETAVREVWEETGVKGEIL 59 Query: 72 SLVPLTFISHPYE--KFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSMLPADL 128 + + + + + +++ EG P+ S E + ++ + + + D Sbjct: 60 DYIGEIHYWYTLKGERIFKTVKYYLMKYKEGEPRPSWEVKDAKFFPIKEAKKLLKYKGDK 119 Query: 129 SLISFLRKH 137 + K Sbjct: 120 EIFEKALKL 128 >3o8s_A Nudix hydrolase, ADP-ribose pyrophosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.27A {Streptococcus suis} Length = 206 Score = 80.4 bits (198), Expect = 1e-16 Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 10/121 (8%) Query: 9 ILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68 L A+F+ K+LL W PGG + ++ ++ + +E+ EE + V Sbjct: 69 PKLDTRAAIFQ-EDKILLVQENDGL-----WSLPGGWCDVDQSVKDNVVKEVKEEAGLDV 122 Query: 69 KPFSLVPL---TFISHPYEKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQNYSML 124 + +V + + + F +C G Q + E + +LDDL + Sbjct: 123 EAQRVVAILDKHKNNPAKSAHRVTKVFILCRLLGGEFQPNSETVASGFFSLDDLPPLYLG 182 Query: 125 P 125 Sbjct: 183 K 183 >3grn_A MUTT related protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.70A {Methanosarcina mazei} Length = 153 Score = 79.9 bits (196), Expect = 2e-16 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 4/124 (3%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDK-SHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 K ++ V + G+ LL R ++ ++ W+ PGGK+ E+ +E + RE++EE Sbjct: 5 KPYIISVYALIRNEKGEFLLLRRSENSRTNAGKWDLPGGKVNPDESLKEGVAREVWEETG 64 Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG-IPQSCEGQQLQWVALDDLQNYSML 124 I + P + ++ + ++ F + S E + WV+L+ + L Sbjct: 65 ITMVPGDI--AGQVNFELTEKKVIAIVFDGGYVVADVKLSYEHIEYSWVSLEKILGMETL 122 Query: 125 PADL 128 PA Sbjct: 123 PAYF 126 >2qjo_A Bifunctional NMN adenylyltransferase/nudix hydrolase; two individual domains; HET: APR NAD; 2.60A {Synechocystis SP} Length = 341 Score = 79.0 bits (194), Expect = 3e-16 Identities = 29/127 (22%), Positives = 44/127 (34%), Gaps = 11/127 (8%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70 + AV G VL+ R G PGG I+ ET E + REL EE + V Sbjct: 203 FITTDAVVVQAGHVLMVRRQAKPGLG-LIALPGGFIKQNETLVEGMLRELKEETRLKVPL 261 Query: 71 FSLVPLTFISHPY------EKFHLLMPFFVCHCFEG----IPQSCEGQQLQWVALDDLQN 120 L SH + + + + G + + Q+ W++L DL Sbjct: 262 PVLRGSIVDSHVFDAPGRSLRGRTITHAYFIQLPGGELPAVKGGDDAQKAWWMSLADLYA 321 Query: 121 YSMLPAD 127 + Sbjct: 322 QEEQIYE 328 >1vcd_A NDX1; nudix protein, diadenosine polyphosphate, AP6A, hydrolase, riken structural genomics/proteomics initiative, RSGI; 1.70A {Thermus thermophilus HB8} SCOP: d.113.1.1 PDB: 1vc8_A 1vc9_A* Length = 126 Score = 78.1 bits (192), Expect = 7e-16 Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 6/125 (4%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 VF +VLL W FP G E GE+ EEA RE++EE + + Sbjct: 5 AGGVVFNAKREVLLLRDRMGF-----WVFPKGHPEPGESLEEAAVREVWEETGVRAEVLL 59 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132 + + + +F+ W + ++ + P DL L+ Sbjct: 60 PLY-PTRYVNPKGVEREVHWFLMRGEGAPRLEEGMTGAGWFSPEEARALLAFPEDLGLLE 118 Query: 133 FLRKH 137 + Sbjct: 119 VALER 123 >2b0v_A Nudix hydrolase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, unknown function; 1.55A {Nitrosomonas europaea} SCOP: d.113.1.1 Length = 153 Score = 77.6 bits (190), Expect = 1e-15 Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 4/129 (3%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 V AV E K LL + P G +E GE+ +A +RE+ EE P Sbjct: 9 VTVAAVIEQDDKYLL-VEEIPRGTAIKLNQPAGHLEPGESIIQACSREVLEETGHSFLPE 67 Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC---EGQQLQWVALDDLQNYSMLPADL 128 L + + L F P + W ++D+++ + Sbjct: 68 VLTGIYHWTCASNGTTYLRFTFSGQVVSFDPDRKLDTGIVRAAWFSIDEIRAKQAMHRTP 127 Query: 129 SLISFLRKH 137 ++ + + Sbjct: 128 LVMQCIEDY 136 >2fvv_A Diphosphoinositol polyphosphate phosphohydrolase 1; nudix, inositol polyphosphate metabolism, structural genomics, structural genomics consortium; HET: IHP; 1.25A {Homo sapiens} SCOP: d.113.1.1 PDB: 2q9p_A* 2duk_A Length = 194 Score = 77.4 bits (190), Expect = 1e-15 Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 7/111 (6%) Query: 11 LVVACAVF--EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68 AC F E +VLL + H + W PGG +E E P A RE+ EE + Sbjct: 41 KRAACLCFRSESEEEVLLVSSSR---HPDRWIVPGGGMEPEEEPSVAAVREVCEEAGVKG 97 Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP-QSCEGQQLQWVALDDL 118 LV F + + + V E G++ +W ++D Sbjct: 98 TLGRLVG-IFENQERKHRTYVYVLIVTEVLEDWEDSVNIGRKREWFKIEDA 147 >1q27_A Putative nudix hydrolase DR0079; radiation resistance; NMR {Deinococcus radiodurans} SCOP: d.113.1.2 PDB: 2o5f_A Length = 171 Score = 76.2 bits (187), Expect = 2e-15 Identities = 26/111 (23%), Positives = 40/111 (36%), Gaps = 3/111 (2%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68 VV + G++ + R KS + GG ++ GET EEA RE EEL + + Sbjct: 35 RVVNAFLRNSQGQLWIPRRSPSKSLFPNALDVSVGGAVQSGETYEEAFRREAREELNVEI 94 Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDL 118 S PL S M + + +W+ + L Sbjct: 95 DALSWRPLASFSPFQTTLSSFMCVYELRSDATPIFNPNDISGGEWLTPEHL 145 >2xsq_A U8 snoRNA-decapping enzyme; hydrolase, mRNA decapping, mRNA turnover, structural genomic consortium, SGC; HET: IMP; 1.72A {Homo sapiens} PDB: 3cou_A Length = 217 Score = 74.5 bits (182), Expect = 8e-15 Identities = 26/122 (21%), Positives = 41/122 (33%), Gaps = 20/122 (16%) Query: 22 GKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPFSLVPLTF-I 79 +L+ R + FPGG ++ + E+ L REL EEL F + + Sbjct: 65 YAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAFRVERTDYRS 119 Query: 80 SHPYEKFHLLMPFFVCHCFEGIPQSCEG------------QQLQWVALDDLQNYSM-LPA 126 SH ++ F+ + E L V L L++ LP Sbjct: 120 SHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTLRDGVGGLPT 179 Query: 127 DL 128 L Sbjct: 180 FL 181 >3i9x_A MUTT/nudix family protein; structural genomics, hydrolase, PSI-2, protein structure initiative; 2.20A {Listeria innocua} Length = 187 Score = 74.0 bits (181), Expect = 1e-14 Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 17/130 (13%) Query: 11 LVVACAVF-------EPGGKVLLSCRPKDK------SHGEFWEFPGGKIEDGETPEEALT 57 + +P +LL R G W PGG +++ E+ E+A Sbjct: 28 YTSDMILTTVKELNGKPTLHILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESAEQAAE 87 Query: 58 RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC----FEGIPQSCEGQQLQWV 113 REL EE ++ P + + ++ F E + ++ Sbjct: 88 RELEEETSLTDIPLIPFGVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAAEIGLF 147 Query: 114 ALDDLQNYSM 123 + + + Sbjct: 148 PMTEALELPL 157 >2fml_A MUTT/nudix family protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.26A {Enterococcus faecalis} SCOP: a.4.5.68 d.113.1.6 Length = 273 Score = 72.9 bits (178), Expect = 2e-14 Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 9/128 (7%) Query: 8 KILLVVACAVF-----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFE 62 K L V + KVLL R W PGG + E+ E+++ RE E Sbjct: 37 KPSLTVDMVLLCYNKEADQLKVLLIQRKGHPFRN-SWALPGGFVNRNESTEDSVLRETKE 95 Query: 63 ELAIVVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQ-SCEGQQLQWVALDDLQ 119 E +V+ ++ L S P + ++ ++ E + +++ W L+ Sbjct: 96 ETGVVISQENIEQLHSFSRPDRDPRGWVVTVSYLAFIGEEPLIAGDDAKEVHWFNLERHG 155 Query: 120 NYSMLPAD 127 + L + Sbjct: 156 QHITLSHE 163 >1x51_A A/G-specific adenine DNA glycosylase; nudix domain, DNA repair, alpha-3 isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.113.1.3 Length = 155 Score = 72.7 bits (177), Expect = 2e-14 Identities = 20/132 (15%), Positives = 40/132 (30%) Query: 7 KKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 + V G ++LL RP WEFP E E + + + A Sbjct: 19 ESSATCVLEQPGALGAQILLVQRPNSGLLAGLWEFPSVTWEPSEQLQRKALLQELQRWAG 78 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPA 126 + L L + H + L + P + +W+ ++ ++ A Sbjct: 79 PLPATHLRHLGEVVHTFSHIKLTYQVYGLALEGQTPVTTVPPGARWLTQEEFHTAAVSTA 138 Query: 127 DLSLISFLRKHA 138 + + + Sbjct: 139 MKKVFRVYQGQS 150 >2yyh_A MUTT domain, 8-OXO-DGTPase domain; nudix family protein, structural genomics, NPPSFA; 1.80A {Aquifex aeolicus VF5} Length = 139 Score = 72.8 bits (178), Expect = 3e-14 Identities = 25/123 (20%), Positives = 49/123 (39%), Gaps = 7/123 (5%) Query: 5 NLKKILLVVACAVF----EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60 N+K LL + E ++L R K PGG +E GE EEA RE+ Sbjct: 4 NVKTPLLATDVIIRLWDGENFKGIVLIER---KYPPVGLALPGGFVEVGERVEEAAAREM 60 Query: 61 FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120 EE + V+ L+ + + H++ ++ + ++++ L+++ Sbjct: 61 REETGLEVRLHKLMGVYSDPERDPRAHVVSVVWIGDAQGEPKAGSDAKKVKVYRLEEIPL 120 Query: 121 YSM 123 + Sbjct: 121 DKL 123 >2qjt_B Nicotinamide-nucleotide adenylyltransferase; two individual domains, hydrolase; HET: AMP; 2.30A {Francisella tularensis} PDB: 2r5w_B Length = 352 Score = 71.4 bits (174), Expect = 7e-14 Identities = 24/119 (20%), Positives = 42/119 (35%), Gaps = 12/119 (10%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70 V A+ +L+ R W PGG +E ET +A+ RELFEE I + Sbjct: 208 FVTVDALVIVNDHILMVQRKAHPGKD-LWALPGGFLECDETIAQAIIRELFEETNINLTH 266 Query: 71 FSLVPLTFISHPYEK----------FHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118 L ++ H+ + F + + + ++W++L Sbjct: 267 EQLAIAKRCEKVFDYPDRSVRGRTISHVGLFVFDQWPSLPEINAADDAKDVKWISLGSN 325 >1rya_A GDP-mannose mannosyl hydrolase; GDP-glucose, nudix, nudix Mg-complex; HET: GDP; 1.30A {Escherichia coli} SCOP: d.113.1.5 PDB: 2gt2_A 2gt4_A* 2i8t_A* 2i8u_A* Length = 160 Score = 70.3 bits (171), Expect = 2e-13 Identities = 27/129 (20%), Positives = 47/129 (36%), Gaps = 11/129 (8%) Query: 10 LLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69 L+ + V G+ LL R + G +W PGG+++ ET E A R EL + + Sbjct: 18 LVSLDFIVENSRGEFLLGKRTNRPAQG-YWFVPGGRVQKDETLEAAFERLTMAELGLRLP 76 Query: 70 PFSLVPLTFISHPYE--------KFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQ 119 + H Y+ H ++ F E + + +W+ D L Sbjct: 77 ITAGQFYGVWQHFYDDNFSGTDFTTHYVVLGFRFRVSEEELLLPDEQHDDYRWLTSDALL 136 Query: 120 NYSMLPADL 128 + A+ Sbjct: 137 ASDNVHANS 145 >2jvb_A Protein PSU1, mRNA-decapping enzyme subunit 2; DCP2, mRNA decay, cytoplasm, hydrolase, manganese, metal-binding, mRNA processing; NMR {Saccharomyces cerevisiae} Length = 146 Score = 69.9 bits (170), Expect = 2e-13 Identities = 29/143 (20%), Positives = 49/143 (34%), Gaps = 16/143 (11%) Query: 7 KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 KK + V A+F E K+LL + W FP GKI E + RE+ EE+ Sbjct: 1 KKSIPVRGAAIFNENLSKILLVQGTESD----SWSFPRGKISKDENDIDCCIREVKEEIG 56 Query: 66 IVVKPF-SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG-QQLQWVALDDLQN--- 120 + + + + + + + V F PQ +++W + Sbjct: 57 FDLTDYIDDNQFIERNIQGKNYKIFLISGVSEVFNFKPQVRNEIDKIEWFDFKKISKTMY 116 Query: 121 ------YSMLPADLSLISFLRKH 137 Y + L +LR Sbjct: 117 KSNIKYYLINSMMRPLSMWLRHQ 139 >2o1c_A DATP pyrophosphohydrolase; nudix NTP hydrolase NTP pyrophosphohydrolase MUTT dihydroneopterin triphosphate pyrophosphohydrolase folate biosynthesis; 1.80A {Escherichia coli} PDB: 2o5w_A Length = 150 Score = 69.5 bits (169), Expect = 2e-13 Identities = 29/145 (20%), Positives = 49/145 (33%), Gaps = 17/145 (11%) Query: 1 MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60 M D K+ + ++ + +VL+ R D FW+ G +E+GET +A RE+ Sbjct: 1 MKDKVYKRPVSILVVIYAQDTKRVLMLQRRDDPD---FWQSVTGSVEEGETAPQAAMREV 57 Query: 61 FEELAIVVKPFSLVP--------------LTFISHPYEKFHLLMPFFVCHCFEGIPQSCE 106 EE+ I V L L P + F + E E Sbjct: 58 KEEVTIDVVAEQLTLIDCQRTVEFEIFSHLRHRYAPGVTRNTESWFCLALPHERQIVFTE 117 Query: 107 GQQLQWVALDDLQNYSMLPADLSLI 131 +W+ + ++ I Sbjct: 118 HLAYKWLDAPAAAALTKSWSNRQAI 142 >1xsa_A BIS(5'-nucleosyl)-tetraphosphatase; nudix enzyme, human AP4A hydrolase, alpha-beta; NMR {Homo sapiens} SCOP: d.113.1.1 PDB: 1xsb_A 1xsc_A* Length = 153 Score = 69.5 bits (169), Expect = 2e-13 Identities = 22/130 (16%), Positives = 37/130 (28%), Gaps = 8/130 (6%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 + V + LL H W P G +E GE E R EE I + Sbjct: 20 LIPKVDNNAIEFLLLQASDGIHH---WTPPKGHVEPGEDDLETALRATQEEAGIEAGQLT 76 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHC-----FEGIPQSCEGQQLQWVALDDLQNYSMLPAD 127 ++ Y + I S E Q +W+ L++ + Sbjct: 77 IIEGFKRELNYVARNKPKTVIYWLAEVKDYDVEIRLSHEHQAYRWLGLEEACQLAQFKEM 136 Query: 128 LSLISFLRKH 137 + + + Sbjct: 137 KAALQEGHQF 146 >2azw_A MUTT/nudix family protein; MUTT/nudix ,enterococcus faecalis, structural genomics, PSI, protein structure initiative; HET: 1PE; 1.90A {Enterococcus faecalis V583} SCOP: d.113.1.1 Length = 148 Score = 69.2 bits (168), Expect = 3e-13 Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 10/132 (7%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 V +P ++ + + + PGG+IE ET EEA+ RE+ EEL I V+ Sbjct: 21 AYIIVSKPENNTMVLVQAPNG----AYFLPGGEIEGTETKEEAIHREVLEELGISVEIGC 76 Query: 73 LVPLT----FISHPYEKFHLLMPFFVCHCFEGIPQSCE-GQQLQWVALDDLQNYSMLPAD 127 + + +H ++ F+V + + + + E L WVA ++ + Sbjct: 77 YLGEADEYFYSNHRQTAYYNPGYFYVANTWRQLSEPLERTNTLHWVAPEEAVRLLKRGSH 136 Query: 128 LSLI-SFLRKHA 138 + +L + Sbjct: 137 RWAVEKWLAAAS 148 >3fcm_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, 11180J, structural genomics; 2.20A {Clostridium perfringens atcc 13124} Length = 197 Score = 69.1 bits (168), Expect = 3e-13 Identities = 18/136 (13%), Positives = 39/136 (28%), Gaps = 19/136 (13%) Query: 11 LVVACAVFEP-GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69 L + K L+ S W + GG ++ + + +EL EE + Sbjct: 46 LTSSAFAVNKERNKFLMIHHNIYNS----WAWTGGHSDNEKDQLKVAIKELKEETGVKNP 101 Query: 70 PFSLVPLTFISHPYEKFHLLMPFFV--------------CHCFEGIPQSCEGQQLQWVAL 115 L + H+ +V + + E + W+ Sbjct: 102 TPLLDKAFALDVLTVNGHIKRGKYVSSHLHLNLTYLIECSEDETLMLKEDENSGVMWIPF 161 Query: 116 DDLQNYSMLPADLSLI 131 +++ Y P + + Sbjct: 162 NEISKYCSEPHMIPIY 177 >2a6t_A SPAC19A8.12; alpha/beta/alpha, RNA binding protein,hydrolase; 2.50A {Schizosaccharomyces pombe} SCOP: a.242.1.1 d.113.1.7 PDB: 2qkm_B* Length = 271 Score = 68.5 bits (167), Expect = 6e-13 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 6/118 (5%) Query: 7 KKILLVVACAVF-EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELA 65 K + V + + +L K S W FP GKI+ E+ + RE++EE Sbjct: 98 KTRIPVRGAIMLDMSMQQCVLVKGWKASSG---WGFPKGKIDKDESDVDCAIREVYEETG 154 Query: 66 IVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC-FEGIPQSCEG-QQLQWVALDDLQNY 121 + L ++ + +++W L DL + Sbjct: 155 FDCSSRINPNEFIDMTIRGQNVRLYIIPGISLDTRFESRTRKEISKIEWHNLMDLPTF 212 >1sjy_A MUTT/nudix family protein; nudix fold, alpha-beta-alpha sandwich, structural genomics, BSGC structure funded by NIH; 1.39A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1soi_A 1su2_A* 1sz3_A* Length = 159 Score = 68.3 bits (166), Expect = 6e-13 Identities = 26/124 (20%), Positives = 45/124 (36%), Gaps = 8/124 (6%) Query: 5 NLKKILLVVACAVFEPGGKVLLSCR---PKDKSHGEFWEFPGGKIEDGETPEEALTRELF 61 ++ L + G +LL P W P G +EDGE P++A RE Sbjct: 8 HVPVELRAAGVVLLNERGDILLVQEKGIPGHPEKAGLWHIPSGAVEDGENPQDAAVREAC 67 Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP----QSCEGQQLQWVALDD 117 EE + V+P + P + +L ++ G + E + +V+ +D Sbjct: 68 EETGLRVRPVKFLGAYLGRFP-DGVLILRHVWLAEPEPGQTLAPAFTDEIAEASFVSRED 126 Query: 118 LQNY 121 Sbjct: 127 FAQL 130 >3e57_A Uncharacterized protein TM1382; structural genomics, nudix hydrolase, PSI-2, protein structure initiative; 1.89A {Thermotoga maritima} Length = 211 Score = 68.1 bits (166), Expect = 7e-13 Identities = 21/120 (17%), Positives = 47/120 (39%), Gaps = 10/120 (8%) Query: 12 VVACAVFEPGGKVLLSCR----PKDKSHGEFWEFPGGKIED------GETPEEALTRELF 61 V+ V G +VL++ R + + H + GG + + E + L RE+ Sbjct: 69 VIPYVVIMDGDRVLITKRTTKQSEKRLHNLYSLGIGGHVREGDGATPREAFLKGLEREVN 128 Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNY 121 EE+ + ++ + L S L F+ + + + + + L++L+ + Sbjct: 129 EEVDVSLRELEFLGLINSSTTEVSRVHLGALFLGRGKFFSVKEKDLFEWELIKLEELEKF 188 >1hzt_A Isopentenyl diphosphate delta-isomerase; dimethylallyl, isoprenoids; 1.45A {Escherichia coli} SCOP: d.113.1.2 PDB: 1hx3_A 1r67_A 1x84_A* 1x83_A* 1ppv_A* 1nfz_A* 1nfs_A* 1ppw_A* 1pvf_A 2veh_A* 2vej_A 2vnp_A* 2vnq_A 2g74_A 2g73_A* 2b2k_A 1i9a_A 1q54_A* 1ow2_A* 3hyq_A* Length = 190 Score = 67.7 bits (165), Expect = 8e-13 Identities = 24/117 (20%), Positives = 43/117 (36%), Gaps = 7/117 (5%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETPEEALTRELFEELAIVV 68 L + +F G++L++ R K W G + GE+ E+A+ R EL + + Sbjct: 33 LAFSSWLFNAKGQLLVTRRALSKKAWPGVWTNSVCGHPQLGESNEDAVIRRCRYELGVEI 92 Query: 69 KPFSLVPLTFISHPYEK----FHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQN 120 P + F + + + P F + E QW L D+ + Sbjct: 93 TPPESIYPDFRYRATDPSGIVENEVCPVFAARTTSALQINDDEVMDYQWCDLADVLH 149 >3cou_A Nudix motif 16, nucleoside diphosphate-linked moiety X motif 16; hydrolase, NUDT16, mRNA decapping, mRNA turnover, structural genomics consortium; 1.80A {Homo sapiens} Length = 217 Score = 66.9 bits (163), Expect = 2e-12 Identities = 26/132 (19%), Positives = 41/132 (31%), Gaps = 20/132 (15%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETP-EEALTRELFEELAIVVKPF 71 + +L+ R + FPGG ++ + E+ L REL EEL F Sbjct: 56 MLFGRIPLRYAILMQMRFDGR-----LGFPGGFVDTQDRSLEDGLNRELREELGEAAAAF 110 Query: 72 SLVPLTF-ISHPYEKFHLLMPFFVCH------------CFEGIPQSCEGQQLQWVALDDL 118 + + SH ++ F+ E L V L L Sbjct: 111 RVERTDYRSSHVGSGPRVVAHFYAKRLTLEELLAVEAGATRAKDHGLEVLGLVRVPLYTL 170 Query: 119 QN-YSMLPADLS 129 ++ LP L Sbjct: 171 RDGVGGLPTFLE 182 >1ktg_A Diadenosine tetraphosphate hydrolase; nudix, AMP, magnesium cluster; HET: AMP; 1.80A {Caenorhabditis elegans} SCOP: d.113.1.1 PDB: 1kt9_A* Length = 138 Score = 66.4 bits (161), Expect = 2e-12 Identities = 25/130 (19%), Positives = 43/130 (33%), Gaps = 7/130 (5%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 +V + LL H W P G ++ GE +A RE EE I + Sbjct: 8 LVIYRKLAGKIEFLLLQASYPPHH---WTPPKGHVDPGEDEWQAAIRETKEEANITKEQL 64 Query: 72 SLVPLTFISHPYEKF--HLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPAD 127 ++ + YE + +++ + S E Q +W L+D + Sbjct: 65 TIHEDCHETLFYEAKGKPKSVKYWLAKLNNPDDVQLSHEHQNWKWCELEDAIKIADYAEM 124 Query: 128 LSLISFLRKH 137 SL+ Sbjct: 125 GSLLRKFSAF 134 >2fb1_A Conserved hypothetical protein; structural genomics, PSI, protein structure initiative; 2.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: a.4.5.68 d.113.1.6 Length = 226 Score = 66.0 bits (160), Expect = 3e-12 Identities = 21/140 (15%), Positives = 45/140 (32%), Gaps = 8/140 (5%) Query: 8 KILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEEL 64 L + C +F E +LL R + + G W GG ++ E+ ++A R L E Sbjct: 11 TFYLGIDCIIFGFNEGEISLLLLKRNFEPAMG-EWSLMGGFVQKDESVDDAAKRVLAELT 69 Query: 65 AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYS 122 + V ++ + + + WV +++L Sbjct: 70 GLENVYMEQVGAFGAIDRDPGERVVSIAYYALININEYDRELVQKHNAYWVNINELPALI 129 Query: 123 MLPADL--SLISFLRKHALH 140 ++ +++ A Sbjct: 130 FDHPEMVDKAREMMKQKASV 149 >1f3y_A Diadenosine 5',5'''-P1,P4-tetraphosphate hydrolase; enzyme,mixed 4-stranded beta sheet, 2-stranded antiparallel sheet; NMR {Lupinus angustifolius} SCOP: d.113.1.1 PDB: 1jkn_A* Length = 165 Score = 64.8 bits (157), Expect = 6e-12 Identities = 23/129 (17%), Positives = 37/129 (28%), Gaps = 26/129 (20%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK--- 69 V + K+ + R W+ P G I++GE P A REL EE + Sbjct: 17 VGICLMNNDKKIFAASRLDIPD---AWQMPQGGIDEGEDPRNAAIRELREETGVTSAEVI 73 Query: 70 -----------PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIP---------QSCEGQQ 109 P + I + +F+ + E + Sbjct: 74 AEVPYWLTYDFPPKVREKLNIQWGSDWKGQAQKWFLFKFTGQDQEINLLGDGSEKPEFGE 133 Query: 110 LQWVALDDL 118 WV + L Sbjct: 134 WSWVTPEQL 142 >3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II(PSI II), NYSGXRC, 11181H, structural genomics; 2.15A {Bifidobacterium adolescentis ATCC15703} Length = 364 Score = 62.9 bits (152), Expect = 2e-11 Identities = 24/156 (15%), Positives = 43/156 (27%), Gaps = 30/156 (19%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 + +V + RPK W +P GK+E ET A RE+ EE VK Sbjct: 28 SKSAQEQLDSIEVCIVHRPKYDD----WSWPKGKLEQNETHRHAAVREIGEETGSPVKLG 83 Query: 72 SLVPLTFISHPYEKFHLLMP-----------FFVCHCFEG--------------IPQSCE 106 + E +++ E Sbjct: 84 PYLCEVEYPLSEEGKKTRHSHDCTADTKHTLYWMAQPISADDAEHLLDAFGPVHRADVGE 143 Query: 107 GQQLQWVALDDLQNYSMLPADLSLIS-FLRKHALHM 141 + WV++ + + D ++ F+ + Sbjct: 144 INDIVWVSVREARKILSHSTDKDTLAVFVDRVQEGA 179 >3gz5_A MUTT/nudix family protein; DNA binding protein, nudix domain, WHTH domain; 2.20A {Shewanella oneidensis} PDB: 3gz6_A* 3gz8_A* Length = 240 Score = 62.4 bits (151), Expect = 4e-11 Identities = 31/138 (22%), Positives = 51/138 (36%), Gaps = 8/138 (5%) Query: 7 KKILLVVACAVF---EPGGKVLLSCRPKDKSHGEFWEFPGGKIED--GETPEEALTRELF 61 K LL V +F + KVLL R G W PGG I++ E+ E+ + R+L Sbjct: 19 KAQLLTVDAVLFTYHDQQLKVLLVQRSNHPFLGL-WGLPGGFIDETCDESLEQTVLRKLA 77 Query: 62 EELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHC--FEGIPQSCEGQQLQWVALDDLQ 119 E+ A+V + + + + + Q ++W L D+ Sbjct: 78 EKTAVVPPYIEQLCTVGNNSRDARGWSVTVCYTALMSYQACQIQIASVSDVKWWPLADVL 137 Query: 120 NYSMLPADLSLISFLRKH 137 + L LI R+ Sbjct: 138 QMPLAFDHLQLIEQARER 155 >1u20_A U8 snoRNA-binding protein X29; modified nudix hydrolase fold; 2.10A {Xenopus laevis} SCOP: d.113.1.1 PDB: 2a8t_A* 2a8q_A* 2a8p_A* 2a8r_A* 2a8s_A* Length = 212 Score = 62.0 bits (150), Expect = 5e-11 Identities = 20/113 (17%), Positives = 32/113 (28%), Gaps = 9/113 (7%) Query: 13 VACAVFEPGGKVLLSCRPKD------KSHGEFWEFPGGKIEDGETP-EEALTRELFEELA 65 + P L P FPGG ++ + EE L REL EEL Sbjct: 36 CHALLHAPSQAKLFDRVPIRRVLLMMMRFDGRLGFPGGFVDTRDISLEEGLKRELEEELG 95 Query: 66 IVVKPFSLV-PLTFISHPYEKFHLLM-PFFVCHCFEGIPQSCEGQQLQWVALD 116 + + S E + F++ + E + + Sbjct: 96 PALATVEVTEDDYRSSQVREHPQKCVTHFYIKELKLEEIERIEAEAVNAKDHG 148 >3f6a_A Hydrolase, nudix family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.02A {Clostridium perfringens atcc 13124} Length = 159 Score = 61.5 bits (148), Expect = 6e-11 Identities = 30/141 (21%), Positives = 44/141 (31%), Gaps = 25/141 (17%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVK-- 69 KVLL K K GG IE E PEEA RE EE + V Sbjct: 7 FTVSVFIVCKDKVLLHLHKKAK----KMLPLGGHIEVNELPEEACIREAKEEAGLNVTLY 62 Query: 70 ------------PFSLVPLTFISHPYEKFHLLMPFFVCHCF-------EGIPQSCEGQQL 110 L H + + E P+ E + L Sbjct: 63 NPIDINLKKSCDLSGEKLLINPIHTILGDVSPNHSHIDFVYYATTTSFETSPEIGESKIL 122 Query: 111 QWVALDDLQNYSMLPADLSLI 131 +W + +DL+N + ++ ++ Sbjct: 123 KWYSKEDLKNAHNIQENILVM 143 >1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; HET: MSE; 2.20A {Escherichia coli K12} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A Length = 269 Score = 58.1 bits (140), Expect = 7e-10 Identities = 31/131 (23%), Positives = 46/131 (35%), Gaps = 10/131 (7%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 V +L + + G +E GET E+A+ RE+ EE I VK Sbjct: 141 PCIIVAIRRDDSILLAQHTRHRN-GVHTVLAGFVEVGETLEQAVAREVMEESGIKVKNLR 199 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEG--IPQSCEGQQLQWVALDDLQNYSMLPADLSL 130 S P+ LM F+ G + E + W DDL LP ++ Sbjct: 200 ----YVTSQPWPFPQSLMTAFMAEYDSGDIVIDPKELLEANWYRYDDLPL---LPPPGTV 252 Query: 131 ISFLRKHALHM 141 L + + M Sbjct: 253 ARRLIEDTVAM 263 >2kdv_A RNA pyrophosphohydrolase; nudix family, magnesium, manganese, zinc; NMR {Escherichia coli} PDB: 2kdw_A Length = 164 Score = 57.4 bits (138), Expect = 1e-09 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 24/126 (19%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 V + G+V+ R + W+FP G I GE+ E+A+ RELFEE+ + K Sbjct: 11 VGIVICNRQGQVMW-ARRFGQ---HSWQFPQGGINPGESAEQAMYRELFEEVGLSRKDVR 66 Query: 73 L-------------VPLTFISHPYEKFHLLMPFFVCHCFEGIP-------QSCEGQQLQW 112 + L +F+ G + E +W Sbjct: 67 ILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLLQLVSGDAEINMQTSSTPEFDGWRW 126 Query: 113 VALDDL 118 V+ Sbjct: 127 VSYWYP 132 >1nqz_A COA pyrophosphatase (MUTT/nudix family protein); D.radiodurans, hydrolase; 1.70A {Deinococcus radiodurans} SCOP: d.113.1.1 PDB: 1nqy_A Length = 194 Score = 55.5 bits (133), Expect = 4e-09 Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 7/114 (6%) Query: 12 VVACAVFEPGGKVLLSCRPKD-KSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKP 70 V+ E +VLL+ R + +H FPGG ++ GETP +A RE EE+A+ P Sbjct: 38 VLVALTREADPRVLLTVRSSELPTHKGQIAFPGGSLDAGETPTQAALREAQEEVAL--DP 95 Query: 71 FSLVPLTFISHPYEKFHLLMPFFVC----HCFEGIPQSCEGQQLQWVALDDLQN 120 ++ L + + + + + + + E Q+ L +L+ Sbjct: 96 AAVTLLGELDDVFTPVGFHVTPVLGRIAPEALDTLRVTPEVAQIITPTLAELRA 149 >3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Length = 369 Score = 55.5 bits (133), Expect = 4e-09 Identities = 21/126 (16%), Positives = 45/126 (35%), Gaps = 6/126 (4%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 + + G+VL+ R WEFP + + + E L + + E+ + V+ Sbjct: 243 AVAVLADDEGRVLIRKRDSTGLLANLWEFPSCETDGADGKE-KLEQMVGEQYGLQVE--L 299 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQNYSMLPADLSLIS 132 P+ H + + F G P + + D+L+ Y+ + + Sbjct: 300 TEPIVSFEHAFSHLVWQLTVFPGRLVHGGP---VEEPYRLAPEDELKAYAFPVSHQRVWR 356 Query: 133 FLRKHA 138 ++ A Sbjct: 357 EYKEWA 362 >1q33_A Pyrophosphatase, ADP-ribose pyrophosphatase; nudix fold, hydrolase; HET: BGC; 1.81A {Homo sapiens} SCOP: d.113.1.1 PDB: 1qvj_A* Length = 292 Score = 52.3 bits (125), Expect = 4e-08 Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 19 EPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTF 78 + + + R W PGG ++ GE L RE EE ++ S Sbjct: 136 KHILQFVAIKRK----DCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREI 191 Query: 79 ISHPYEKFH 87 ++ F Sbjct: 192 EEKLHKLFS 200 >1mk1_A ADPR pyrophosphatase; nudix hydrolase, adprase, adenosine diphospho-ribose, RV1700; HET: APR; 2.00A {Mycobacterium tuberculosis} SCOP: d.113.1.1 PDB: 1mp2_A 1mqe_A* 1mqw_A* 1mr2_A* Length = 207 Score = 51.5 bits (123), Expect = 6e-08 Identities = 18/113 (15%), Positives = 37/113 (32%), Gaps = 10/113 (8%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIED-GETPEEALTRELFEELAIVVKPF 71 VA + G + + + + WE P G ++ GE P REL EE+ + + Sbjct: 46 VAIVAMDDNGNIPMVYQYRHTYGRRLWELPAGLLDVAGEPPHLTAARELREEVGLQASTW 105 Query: 72 SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSC----EGQQLQWVALDDL 118 ++ + + E + + E + W + + Sbjct: 106 QVLVDLDTAPGFSDESVRV---YLATGLREVGRPEAHHEEADMTMGWYPIAEA 155 >2fkb_A Putative nudix hydrolase YFCD; putative protein, MAD, structural genomics, PSI, protein structure initiative; HET: MSE; 2.00A {Escherichia coli K12} SCOP: d.113.1.2 Length = 180 Score = 51.7 bits (123), Expect = 6e-08 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 8/134 (5%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSHGEFWE--FPGGKIEDGETPEEALTRELFEELAIVV 68 V + GK+L+ R + K GG ++ E E+ RE EEL I Sbjct: 38 RATYIVVHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAG 97 Query: 69 KPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI-PQSCEGQQLQWVALDDLQNY--SMLP 125 P + + F C Q E ++ W+ +++ P Sbjct: 98 VP--FAEHGQFYFEDKNCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTP 155 Query: 126 ADLSLIS-FLRKHA 138 L ++ +++++A Sbjct: 156 DSLKALALWMKRNA 169 >1v8y_A ADP-ribose pyrophosphatase; nudix motif, loop-helix-loop, MUTT family, riken structural genomics/proteomics initiative, RSGI; HET: APR; 1.65A {Thermus thermophilus} SCOP: d.113.1.1 PDB: 1v8v_A* 1v8n_A 1v8l_A* 1v8m_A* 1v8i_A 1v8r_A* 1v8s_A* 1v8t_A* 1v8w_A 1v8u_A Length = 170 Score = 50.1 bits (119), Expect = 2e-07 Identities = 21/105 (20%), Positives = 36/105 (34%) Query: 14 ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSL 73 + G++L + + E P G IE GE P EA REL E+ + L Sbjct: 37 VAVIALREGRMLFVRQMRPAVGLAPLEIPAGLIEPGEDPLEAARRELAEQTGLSGDLTYL 96 Query: 74 VPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDL 118 ++ + E P E ++ W+ ++ Sbjct: 97 FSYFVSPGFTDEKTHVFLAENLKEVEAHPDEDEAIEVVWMRPEEA 141 >2w4e_A MUTT/nudix family protein; ADP-ribose pyrophosphatase, hydrolase; 2.00A {Deinococcus radiodurans} Length = 145 Score = 49.8 bits (118), Expect = 2e-07 Identities = 19/109 (17%), Positives = 33/109 (30%), Gaps = 5/109 (4%) Query: 13 VACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFS 72 V G+ +L + + E G +E GE A REL EE+ Sbjct: 8 VFILPVTAQGEAVLIRQFRYPLRATITEIVAGGVEKGEDLGAAAARELLEEVGG--AASE 65 Query: 73 LVPLTFISHPYEKFHLLMPFFVCHCF---EGIPQSCEGQQLQWVALDDL 118 VPL ++ + + E + + L ++ Sbjct: 66 WVPLPGFYPQPSISGVVFYPLLALGVTLGAAQLEDTETIERVVLPLAEV 114 >3dup_A MUTT/nudix family protein; nudix superfamily hydrolase, hydrolase 3 family, structural genomics, protein structure initiative; HET: MSE; 1.80A {Rhodospirillum rubrum atcc 11170} Length = 300 Score = 48.1 bits (114), Expect = 6e-07 Identities = 16/144 (11%), Positives = 34/144 (23%), Gaps = 16/144 (11%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETPEEALTRELFEELAIVVK 69 + + + R DKS G+ G + + L +E EE + Sbjct: 123 LNGYVGAGADLHLWIGRRSPDKSVAPGKLDNMVAGGQPADLSLRQNLIKECAEEADLPEA 182 Query: 70 PFSLVPLTFISHPYEKFHLLMPFFVCHCFEGI--------PQSCEGQQLQWVALDDL--- 118 + + ++ E + Sbjct: 183 LARQAIPVGAITYCMESPAGIKPDTLFLYDLALPEDFRPHNTDGEMADFMLWPAAKVVEA 242 Query: 119 --QNYSMLP-ADLSLISFLRKHAL 139 + +L++I F +H L Sbjct: 243 VRTTEAFKFNVNLTVIDFAIRHGL 266 >1g0s_A Hypothetical 23.7 kDa protein in ICC-TOLC intergenic region; nudix fold, hydrolase; 1.90A {Escherichia coli} SCOP: d.113.1.1 PDB: 1g9q_A* 1ga7_A 1khz_A* 1viq_A Length = 209 Score = 47.7 bits (113), Expect = 8e-07 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 18/121 (14%) Query: 12 VVACAVFEPGGKVLL--SCRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 V +V+L R E G IE+GE+ E+ RE EE + Sbjct: 60 AVLLPFDPVRDEVVLIEQIRIAAYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGL 119 Query: 67 VVKPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQ-------QLQWVALDD 117 +VK V S E+ + V G ++ V+ + Sbjct: 120 IVKRTKPVLSFLASPGGTSERSSI----MVGEVDATTASGIHGLADENEDIRVHVVSREQ 175 Query: 118 L 118 Sbjct: 176 A 176 >2dsc_A ADP-sugar pyrophosphatase; nudix domain, ADPR, ADP-ribose pyrophosphatase, NUDT5, hydrolase; HET: APR; 2.00A {Homo sapiens} PDB: 2dsd_A* 3bm4_A* 2dsb_A Length = 212 Score = 45.9 bits (108), Expect = 3e-06 Identities = 25/121 (20%), Positives = 38/121 (31%), Gaps = 18/121 (14%) Query: 12 VVACAVFEPGG---KVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVV 68 V V + ++L + + G EFP G I+DGETPE A REL EE Sbjct: 64 VAVIPVLQRTLHYECIVLVKQFRPPMGGYCIEFPAGLIDDGETPEAAALRELEEETGYKG 123 Query: 69 KPFSLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQ---------LQWVALDD 117 P + H ++ + + + +D Sbjct: 124 DIAECSPAVCMDPGLSNCTIH----IVTVTINGDDAENARPKPKPGDGEFVEVISLPKND 179 Query: 118 L 118 L Sbjct: 180 L 180 >3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protein structure initiative, midwest center for structural genomics; 2.00A {Nitrosomonas europaea atcc 19718} Length = 189 Score = 45.7 bits (107), Expect = 4e-06 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 6/108 (5%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 V+ + E KVLL R G W P G +E+ ET + RE EE V+ Sbjct: 41 VIVGCIPEWENKVLLCKRAIAPYRG-KWTLPAGFMENNETLVQGAARETLEEANARVEIR 99 Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC-EGQQLQWVALDDL 118 L + + + F + E +++ ++ Sbjct: 100 EL----YAVYSLPHISQVYMLFRAKLLDLDFFPGIESLEVRLFGEQEI 143 >2yvp_A NDX2, MUTT/nudix family protein; nudix protein, ADP-ribose, FAD, hydrolase, structural genomics, NPPSFA; HET: RBY; 1.66A {Thermus thermophilus HB8} PDB: 2yvn_A 2yvm_A* 2yvo_A* Length = 182 Score = 45.5 bits (107), Expect = 5e-06 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 2/111 (1%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 G LL + + + E P GK+++GETPE A REL EE+ + Sbjct: 43 ASFVLPVTERGTALLVRQYRHPTGKFLLEVPAGKVDEGETPEAAARRELREEVGAEAETL 102 Query: 72 SLVPLTFISHPY--EKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120 +P + FH + + E + + L ++ Sbjct: 103 IPLPSFHPQPSFTAVVFHPFLALKARVVTPPTLEEGELLESLELPLTEVYA 153 >1vhz_A ADP compounds hydrolase NUDE; structural genomics; HET: APR; 2.32A {Escherichia coli} SCOP: d.113.1.1 PDB: 1vhg_A* Length = 198 Score = 45.5 bits (107), Expect = 5e-06 Identities = 17/111 (15%), Positives = 33/111 (29%), Gaps = 3/111 (2%) Query: 12 VVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPF 71 V ++L + F G I+ GE+ EA REL EE+ Sbjct: 50 EAVMIVPIVDDHLILIREYAVGTESYELGFSKGLIDPGESVYEAANRELKEEVGFGANDL 109 Query: 72 SLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQ--QLQWVALDDLQN 120 + + ++ P + + + E + L + + Sbjct: 110 TFLKKLSMA-PSYFSSKMNIVVAQDLYPESLEGDEPEPLPQVRWPLAHMMD 159 >2dho_A Isopentenyl-diphosphate delta-isomerase 1; alpha/beta protein; 1.60A {Homo sapiens} PDB: 2i6k_A* 2icj_A 2ick_A* Length = 235 Score = 44.8 bits (105), Expect = 6e-06 Identities = 19/130 (14%), Positives = 38/130 (29%), Gaps = 20/130 (15%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH--GEFWEFPGGKIEDGETP---------EEALTRE 59 + +F K+LL R K G F A R Sbjct: 60 RAFSVFLFNTENKLLLQQRSDAKITFPGCFTNTCCSHPLSNPAELEESDALGVRRAAQRR 119 Query: 60 LFEELAIVVKPFSLVPLTFISHPYEKF---HLLMPFFVCHCFEG------IPQSCEGQQL 110 L EL I ++ + +++ + K + + + P E + Sbjct: 120 LKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRMNVTLNPDPNEIKSY 179 Query: 111 QWVALDDLQN 120 +V+ ++L+ Sbjct: 180 CYVSKEELKE 189 >2pny_A Isopentenyl-diphosphate delta-isomerase 2; carotenoid biosynthesis, cholesterol biosynthesis, isoprene biosynthesis, lipid synthesis, peroxisome; HET: GOL; 1.81A {Homo sapiens} Length = 246 Score = 39.7 bits (92), Expect = 2e-04 Identities = 16/130 (12%), Positives = 37/130 (28%), Gaps = 20/130 (15%) Query: 11 LVVACAVFEPGGKVLLSCRPKDKSH-GEFWEFP-GGKIEDGETP---------EEALTRE 59 + +F ++L+ R K ++ A R Sbjct: 71 RAFSVVLFNTKNRILIQQRSDTKVTFPGYFTDSCSSHPLYNPAELEEKDAIGVRRAAQRR 130 Query: 60 LFEEL---AIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCF----EGIPQSC--EGQQL 110 L EL + P +V +T H + + +C+ E + + Sbjct: 131 LQAELGIPGEQISPEDIVFMTIYHHKAKSDRIWGEHEICYLLLVRKNVTLNPDPSETKSI 190 Query: 111 QWVALDDLQN 120 +++ ++L Sbjct: 191 LYLSQEELWE 200 >1viu_A ADP-ribose pyrophosphatase; structural genomics, hydrolase; 2.40A {Escherichia coli} SCOP: d.113.1.1 Length = 203 Score = 33.5 bits (76), Expect = 0.019 Identities = 15/118 (12%), Positives = 32/118 (27%), Gaps = 13/118 (11%) Query: 12 VVACAVFEPGGKVLLS--CRP---KDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAI 66 V+L R + + + D + PE + +E EE Sbjct: 50 ATILLYNTKKKTVVLIRQFRVATWVNGNESGQLIESCAGLLDNDEPEVCIRKEAIEETGY 109 Query: 67 VVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSC------EGQQLQWVALDDL 118 V + ++S L+ FF+ + + E ++ + Sbjct: 110 EVGEVRKLFELYMSP--GGVTELIHFFIAEYSDNQRANAGGGVEDEDIEVLELPFSQA 165 >3kvh_A Protein syndesmos; NUDT16-like, NUDT16L1, nudix, RNA regulation, RNA-binding, structural genomics consortium, SGC, RNA degradation; 1.70A {Homo sapiens} Length = 214 Score = 32.9 bits (75), Expect = 0.031 Identities = 9/28 (32%), Positives = 14/28 (50%), Gaps = 1/28 (3%) Query: 41 FPGGKIEDG-ETPEEALTRELFEELAIV 67 FPGG ++ + E+ L R L L + Sbjct: 58 FPGGFVDRRFWSLEDGLNRVLGLGLGCL 85 >3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Length = 287 Score = 30.1 bits (67), Expect = 0.19 Identities = 7/37 (18%), Positives = 8/37 (21%) Query: 6 LKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFP 42 L V CA + L FP Sbjct: 245 LSGSPDVEECAPNTGQCHLCLPPSEPWDQTLGVVNFP 281 >3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens} Length = 1263 Score = 28.2 bits (62), Expect = 0.71 Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 7 KKILLVV-------ACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRE 59 + LL++ F+ ++LL+ R K + +E E+ L E Sbjct: 242 PRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGL--E 299 Query: 60 LFEELA 65 + Sbjct: 300 ILSLFV 305 >1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 1d9k_B* 2aq3_A 3byy_A 3byt_A 3bzd_A 1u3h_B ... Length = 238 Score = 26.1 bits (56), Expect = 3.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 17 VFEPGGKVLLSCRPKDKSHGEFW 39 V GGKV LSC+ + + +W Sbjct: 10 VAVTGGKVTLSCQQTNNHNNMYW 32 >3hyb_A RBCX protein; rubisco, protein complex assembly, chaperone; HET: SO4; 2.30A {Anabaena SP} PDB: 2wvw_I 2peo_A* Length = 155 Score = 25.6 bits (56), Expect = 4.4 Identities = 9/25 (36%), Positives = 11/25 (44%) Query: 35 HGEFWEFPGGKIEDGETPEEALTRE 59 F GK++DGE E L E Sbjct: 58 ALWLHNFSAGKVQDGEKYIEELFLE 82 >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 Score = 25.4 bits (55), Expect = 4.7 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 22/94 (23%) Query: 21 GGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVP----- 75 GGK + C P+ S GE E L+R ++ +V P +P Sbjct: 114 GGKGGIICDPRTMSFGEL---------------ERLSRGYVRAISQIVGPTKDIPAPDVY 158 Query: 76 --LTFISHPYEKFHLLMPFFVCHCFEGIPQSCEG 107 ++ +++ L F G P G Sbjct: 159 TNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGG 192 >2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A Length = 238 Score = 25.2 bits (54), Expect = 5.0 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%) Query: 17 VFEPGGKVLLSCRPKDKSHGEFW--EFPGGKIE 47 V GGKV LSC + + +W + G + Sbjct: 11 VAVTGGKVTLSCNQTNNHNNMYWYRQDTGHGLR 43 >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-2; 2.00A {Corynebacterium glutamicum} Length = 516 Score = 25.1 bits (54), Expect = 5.7 Identities = 13/121 (10%), Positives = 28/121 (23%), Gaps = 3/121 (2%) Query: 1 MIDVNLKKILLVVACAVFEPGGKVLL---SCRPKDKSHGEFWEFPGGKIEDGETPEEALT 57 + + + + ++ + G+ + D E Sbjct: 225 IRESRVLPTKFLAELVAESTQCTTMISASAVGFYGHDRGDEILTEESESGDDFLAEVCRD 284 Query: 58 RELFEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDD 117 E A T ++ L + + G W+A+DD Sbjct: 285 WEHATAPASDAGKRVAFIRTGVALSGRGGMLPLLKTLFSTGLGGKFGDGTSWFSWIAIDD 344 Query: 118 L 118 L Sbjct: 345 L 345 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 25.3 bits (55), Expect = 5.8 Identities = 8/30 (26%), Positives = 17/30 (56%), Gaps = 4/30 (13%) Query: 110 LQWVALDDLQNYSMLPADLSLISFLRKHAL 139 ++ A +DL++ ++PAD + H+L Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAG----HSL 1764 >2ial_A CD4+ T cell receptor E8 alpha chain; X-RAY crystallography, major histocompatibility complex, T cell stimulation, melanoma, tumor antigen; 1.92A {Homo sapiens} PDB: 2iam_C 2ian_D Length = 202 Score = 24.8 bits (53), Expect = 6.9 Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%) Query: 19 EPGGKVLLSCRPKDKSHGEFW--EFPGGK 45 + G L C D + W + P G+ Sbjct: 13 QEGANSTLRCNFSDSVNNLQWFHQNPWGQ 41 >2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A* Length = 394 Score = 24.5 bits (53), Expect = 9.3 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 5/63 (7%) Query: 17 VFEPGGKVL-LSCRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIV----VKPF 71 F+ G+V ++ + E F + G E A+T +L E L ++P+ Sbjct: 214 YFKKWGRVSEITNHYLNLLVSEHTAFETTIMVTGNAGEHAMTMKLAEILPFSTGYSIEPY 273 Query: 72 SLV 74 +V Sbjct: 274 EIV 276 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.142 0.452 Gapped Lambda K H 0.267 0.0523 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 1,344,922 Number of extensions: 61520 Number of successful extensions: 327 Number of sequences better than 10.0: 1 Number of HSP's gapped: 271 Number of HSP's successfully gapped: 79 Length of query: 141 Length of database: 5,693,230 Length adjustment: 83 Effective length of query: 58 Effective length of database: 3,680,978 Effective search space: 213496724 Effective search space used: 213496724 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 52 (24.3 bits)