BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780325|ref|YP_003064738.1| mutator MutT protein
[Candidatus Liberibacter asiaticus str. psy62]
         (141 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780325|ref|YP_003064738.1| mutator MutT protein [Candidatus Liberibacter asiaticus str. psy62]
          Length = 141

 Score =  289 bits (739), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60
           MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL
Sbjct: 1   MIDVNLKKILLVVACAVFEPGGKVLLSCRPKDKSHGEFWEFPGGKIEDGETPEEALTREL 60

Query: 61  FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120
           FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN
Sbjct: 61  FEELAIVVKPFSLVPLTFISHPYEKFHLLMPFFVCHCFEGIPQSCEGQQLQWVALDDLQN 120

Query: 121 YSMLPADLSLISFLRKHALHM 141
           YSMLPADLSLISFLRKHALHM
Sbjct: 121 YSMLPADLSLISFLRKHALHM 141


>gi|254780557|ref|YP_003064970.1| dinucleoside polyphosphate hydrolase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 160

 Score = 33.1 bits (74), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 12/88 (13%)

Query: 28  CRPKDKSHGEFWEFPGGKIEDGETPEEALTRELFEELAIVVKPFSLVPLTFISHPYEKFH 87
           C   +  H   W+ P G I   E P +A  REL+EE  I  K  SL+        Y+   
Sbjct: 23  CFHDNNKHLSLWQMPQGGINPQEDPLDAAYRELYEETGI--KSISLLGQGDSYIQYD--- 77

Query: 88  LLMPFFVCHCFEGIPQSCEGQQLQWVAL 115
                F  HC +       GQ  +W A 
Sbjct: 78  -----FPAHCIQ--ENGYVGQMQKWFAF 98


>gi|254780544|ref|YP_003064957.1| phosphoglucosamine mutase protein [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 448

 Score = 24.6 bits (52), Expect = 0.77,   Method: Composition-based stats.
 Identities = 7/10 (70%), Positives = 8/10 (80%)

Query: 94  VCHCFEGIPQ 103
           +CHCFE  PQ
Sbjct: 365 ICHCFEEYPQ 374


>gi|254780704|ref|YP_003065117.1| ABC transporter, nucleotide binding/ATPase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 254

 Score = 22.7 bits (47), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 54  EALTRELFEELAIVVKPFSLVPLTFISHPYEKFHL 88
           E L  EL E L IV+   S+     +S     FH+
Sbjct: 190 EELIHELRESLTIVIVTHSMQQAARVSQRAAMFHM 224


>gi|254780547|ref|YP_003064960.1| OmpA/MotB [Candidatus Liberibacter asiaticus str. psy62]
          Length = 160

 Score = 21.6 bits (44), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 117 DLQNYSMLPADLSLISFL 134
           D  +YS+ PAD+ ++S L
Sbjct: 55  DTSSYSIRPADIQVLSNL 72


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.325    0.142    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,265
Number of Sequences: 1233
Number of extensions: 3824
Number of successful extensions: 8
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 5
length of query: 141
length of database: 328,796
effective HSP length: 66
effective length of query: 75
effective length of database: 247,418
effective search space: 18556350
effective search space used: 18556350
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 34 (17.7 bits)