HHsearch alignment for GI: 254780327 and conserved domain: COG1061
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair].
Probab=98.90 E-value=2.8e-07 Score=78.73 Aligned_cols=359 Identities=19% Similarity=0.208 Sum_probs=194.8
Q ss_pred HCCCCCCHHHHHHHHHH----CCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 60876844799999997----07945067336806899999999986079995697469277387599999999882943
Q gi|254780327|r 81 TLGMRPFDVQLLGGMIL----HKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLS 156 (890)
Q Consensus 81 ~lg~~~~dvQl~g~~~l----~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lgls 156 (890)
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~---~~~~~~Lvlv~~~~L~---~Qw~~~~~~~~~~~ 107 (442)
T COG1061 34 EFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIA---ELKRSTLVLVPTKELL---DQWAEALKKFLLLN 107 (442)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHH---HHCCCEEEEECCHHHH---HHHHHHHHHHCCCC
T ss_conf 78885999999999996222578679996799988999999999---8269889997829999---99999999734886
Q ss_pred --EEEECCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCE-EECCCCC
Q ss_conf --6763598798899740256353344343211122143200002210266743886120354564302421-5238876
Q gi|254780327|r 157 --TGVVFHDLSDDKRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPL-IISGPVE 233 (890)
Q Consensus 157 --vg~~~~~~~~~~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPL-iIsg~~~ 233 (890)
T Consensus 108 ~~~g~~~~~~~~~~----~-~~i~vat~qtl~~~~-------~l~~~~~~~~~liI~DE~Hh~~a~~~~~~~~~~~---- 171 (442)
T COG1061 108 DEIGIYGGGEKELE----P-AKVTVATVQTLARRQ-------LLDEFLGNEFGLIIFDEVHHLPAPSYRRILELLS---- 171 (442)
T ss_pred CCCCEECCCCCCCC----C-CCEEEEEEHHHHHHH-------HHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH----
T ss_conf 76603368723357----7-748999838976415-------5554035666759997524578477999999751----
Q ss_pred CCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf 52478787434544301355144144443220146799998631016884524757600133899999999999985269
Q gi|254780327|r 234 DHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRN 313 (890)
Q Consensus 234 ~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d 313 (890)
T Consensus 172 ---~~~~-~LGLTATp~R~D----~---------~~~~~l~~~~g-------~~vy~~~-------~~~li~~g--~Lap 218 (442)
T COG1061 172 ---AAYP-RLGLTATPERED----G---------GRIGDLFDLIG-------PIVYEVS-------LKELIDEG--YLAP 218 (442)
T ss_pred ---CCCE-EEEEECCCCCCC----C---------CCHHHHHHHCC-------CEEEECC-------HHHHHHCC--CCCC
T ss_conf ---0310-467714872448----7---------75248774057-------5567335-------89983378--7577
Q ss_pred CCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCC-CHHCCCCCCHHHHHHHH
Q ss_conf 73161089378975545851568621123489999997302484312566434889983032-00001343054899999
Q gi|254780327|r 314 RDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYR-KLSGMTGTASTEAEELA 392 (890)
Q Consensus 314 ~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~-kl~GmTGTa~te~~Ef~ 392 (890)
T Consensus 219 ~~~~~------i~~~--------------------------~t~----~~~~~~~~~~~~~~~~~~~~~~---------- 252 (442)
T COG1061 219 YKYVE------IKVT--------------------------LTE----DEEREYAKESARFRELLRARGT---------- 252 (442)
T ss_pred EEEEE------EEEC--------------------------CCH----HHHHHCCHHHHHHHHHHHHHCC----------
T ss_conf 49999------8623--------------------------662----8777403155555555543100----------
Q ss_pred HHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 87199679807899622430203422377889999999999997409907986111678999999998607710223102
Q gi|254780327|r 393 NIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNA 472 (890)
Q Consensus 393 ~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNA 472 (890)
T Consensus 253 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~--~~~it~ 314 (442)
T COG1061 253 ---------------LRAENEARRIAIASERKIAAVRGLL-LKHARGDKTLIFASDVEHAYEIAKLFLAPGI--VEAITG 314 (442)
T ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHH-HHHCCCCCEEEEECCHHHHHHHHHHHCCCCC--EEEEEC
T ss_conf ---------------1345677777664289999999998-7532688669997577999999998626774--246657
Q ss_pred HHHHHH-HHHHHHC--CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 247788-8887530--5587048875024466554027675578886511357553008999999998776433345407
Q gi|254780327|r 473 LYHEKE-AYIISQA--GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAG 549 (890)
Q Consensus 473 k~~~~E-a~Iia~A--G~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 549 (890)
T Consensus 315 ~t~~~eR~~il~~fr~g~-~~~lv~~~vl~EGvDiP-----------------------------------------~-~ 351 (442)
T COG1061 315 ETPKEEREAILERFRTGG-IKVLVTVKVLDEGVDIP-----------------------------------------D-A 351 (442)
T ss_pred CCCHHHHHHHHHHHHCCC-CEEEEEEEEECCCCCCC-----------------------------------------C-C
T ss_conf 899889999999987089-52999961412665788-----------------------------------------8-7
Q ss_pred CCEEEEECCCCCHHHHHHHCCCCCCC--CCCCC-EEEEEECCCHHHHHHCCHHHHH
Q ss_conf 62799826775323355420543456--68672-3899842301454202101344
Q gi|254780327|r 550 GLYVISTERHESRRIDNQLRGRSGRQ--GDPGR-SKFYLSLQDDLMRIFGSPRMES 602 (890)
Q Consensus 550 GL~VigterhesrRid~QlrGRagRQ--GdpG~-s~f~~SleD~l~r~Fgsdri~~ 602 (890)
T Consensus 352 ~~~i~-~~~t~S~~~~~Q~lGR~LR~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (442)
T COG1061 352 DVLII-LRPTGSRRLFIQRLGRGLRPAEGKEDTLALDYSLVPDDLGEEDIARRRRL 406 (442)
T ss_pred CEEEE-ECCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH
T ss_conf 57999-77998799999996166347889996599999645676443326666433