HHsearch alignment for GI: 254780327 and conserved domain: COG1110
>COG1110 Reverse gyrase [DNA replication, recombination, and repair].
Probab=97.83 E-value=0.0022 Score=47.03 Aligned_cols=162 Identities=23% Similarity=0.289 Sum_probs=112.3
Q ss_pred HHHHHHHHHCCCCHHHHH-----HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCEE--EECCCCCHHHHHHHHHHHH
Q ss_conf 999999997399888966-----999999999957660876844799999997079450--6733680689999999998
Q gi|254780327|r 50 TSEFKERINNGETLDDLL-----VPAFAVVREVARRTLGMRPFDVQLLGGMILHKGCVA--EMKTGEGKTLAAVLPVYLN 122 (890)
Q Consensus 50 t~~~~~~~~~g~~l~~~l-----~eafa~~rea~~R~lg~~~~dvQl~g~~~l~~g~ia--em~TGEGKTL~a~l~~~ln 122 (890)
T Consensus 42 ~~~l~~~L~~~~tLk~~~~~~~~~~e~e~~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~ 121 (1187)
T COG1110 42 EALLYNALRERKTLKNLEFFRRYLWEYEEFEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYL 121 (1187)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHH
T ss_conf 99999999844872256899999999999999999863898607889999998737844898278876547999999998
Q ss_pred HHCCCCCEEECCCCHHHHHHHHHHHHHHHHHC-CCEEEEC-CCCCHHHHHHH------CCCCCCCCCCCCCCCCCCHHHH
Q ss_conf 60799956974692773875999999998829-4367635-98798899740------2563533443432111221432
Q gi|254780327|r 123 ALSGKGVHVVTVNDYLARRDSNTMSAIYKFLG-LSTGVVF-HDLSDDKRRAA------YACDITYITNNELGFDYLRDNM 194 (890)
Q Consensus 123 al~g~~vhvvTvNdyLA~RDa~~m~~~y~~lg-lsvg~~~-~~~~~~~r~~~------Y~~di~Y~t~~e~gfDyLrDnm 194 (890)
T Consensus 122 a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F---------L 192 (1187)
T COG1110 122 AKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF---------L 192 (1187)
T ss_pred HHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCEEEEEHHH---------H
T ss_conf 7558749999667899999999999988653785246653123665779999999865996399974787---------8
Q ss_pred HHCHHHHCCCCCCEEEEECCHHHHHH
Q ss_conf 00002210266743886120354564
Q gi|254780327|r 195 QYRRVDMVQRGHNFAIVDEVDSIFID 220 (890)
Q Consensus 195 ~~~~~~~v~r~~~~aivDEvDSiLiD 220 (890)
T Consensus 193 ~k~~e~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 193 SKRFEELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHCCCCCCEEEECCHHHHHHC
T ss_conf 86699840457778998047889863