HHsearch alignment for GI: 254780327 and conserved domain: COG1111
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair].
Probab=98.81 E-value=4.3e-06 Score=69.07 Aligned_cols=408 Identities=21% Similarity=0.213 Sum_probs=212.0
Q ss_pred CCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHH--HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEE---
Q ss_conf 768447999999970794506733680689999999--998607999569746927738759999999988294367---
Q gi|254780327|r 84 MRPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPV--YLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTG--- 158 (890)
Q Consensus 84 ~~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~--~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg--- 158 (890)
T Consensus 16 ~R~YQ-~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~-kvlfLAPTKPLV---~Qh~~~~~~v~~ip~~~i~ 90 (542)
T COG1111 16 PRLYQ-LNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLRWFGG-KVLFLAPTKPLV---LQHAEFCRKVTGIPEDEIA 90 (542)
T ss_pred HHHHH-HHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHCCC-EEEEECCCCHHH---HHHHHHHHHHHCCCHHHEE
T ss_conf 88999-999999864483899528750799999999999874588-489965895179---9999999998589843323
Q ss_pred EECCCCCHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHH------------HHHHHHCCC
Q ss_conf 6359879889974025-635334434321112214320000221026674388612035------------456430242
Q gi|254780327|r 159 VVFHDLSDDKRRAAYA-CDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDS------------IFIDEARTP 225 (890)
Q Consensus 159 ~~~~~~~~~~r~~~Y~-~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDS------------iLiDeartP 225 (890)
T Consensus 91 ~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Gri--d~~-----dv~~lifDEAHRAvGnyAYv~Va~~y~~~~k~~ 163 (542)
T COG1111 91 ALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRI--DLD-----DVSLLIFDEAHRAVGNYAYVFVAKEYLRSAKNP 163 (542)
T ss_pred EECCCCCHHHHHHHHHHCCEEEECCHHHHHHHHCCCC--CHH-----HCEEEEECHHHHCCCCCHHHHHHHHHHHHCCCC
T ss_conf 1117778688999875177899563877768761766--767-----805898623554137606999999999825684
Q ss_pred EEEC---CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCC-CCCCCCCCCCHHHHHHH
Q ss_conf 1523---8876524787874345443013551441444432201467999986310168845-24757600133899999
Q gi|254780327|r 226 LIIS---GPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLK-SGGLYSFENVAIVHLIN 301 (890)
Q Consensus 226 LiIs---g~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~-~~~l~~~~~~~~~~~i~ 301 (890)
T Consensus 164 ~ilgLTASPGs~~ek----I~eV~~nLgIe~vevrT--------E~d-~DV~~Yv~~~kve~ikV~l-p~e~~~ir~~l~ 229 (542)
T COG1111 164 LILGLTASPGSDLEK----IQEVVENLGIEKVEVRT--------EED-PDVRPYVKKIKVEWIKVDL-PEEIKEIRDLLR 229 (542)
T ss_pred EEEEEECCCCCCHHH----HHHHHHHCCCCEEEEEC--------CCC-CCHHHHHCCCEEEEEECCC-CHHHHHHHHHHH
T ss_conf 379872389998799----99999837954289845--------788-5177751404248996368-589999999999
Q ss_pred HHHHHHHHHHCCCCEEEECCCEEEEECCCCC-------CC-CCCCCC--------HHHHHHHHHHHHHCCCCCCHHHHHH
Q ss_conf 9999999852697316108937897554585-------15-686211--------2348999999730248431256643
Q gi|254780327|r 302 NALKSHTLFLRNRDYIVNRDEVVIIDEFTGR-------MM-PGRRYS--------DGQHQALEAKERVKIQPENQTLSSI 365 (890)
Q Consensus 302 ~al~A~~~~~~d~~Yiv~~~~v~ivDe~TGr-------~~-~gr~~~--------~GlhQaieaKe~v~i~~e~~t~a~i 365 (890)
T Consensus 230 ~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletq---------Gi~ 300 (542)
T COG1111 230 DALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQ---------GIR 300 (542)
T ss_pred HHHHHHHHHHHHCCCEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---------CHH
T ss_conf 99999999999769532357310768999999899863576178889999999998888999999850---------869
Q ss_pred HHHHHHH-HCCCHHC-CCCCCHHHHHHHHHHHCCCEEEECCCCCE----EEEECHHHHCCCHHHHHHHHHHHHHHHH--H
Q ss_conf 4889983-0320000-13430548999998719967980789962----2430203422377889999999999997--4
Q gi|254780327|r 366 TFQNYFL-KYRKLSG-MTGTASTEAEELANIYNLDVIEVPTNVPV----IRIDEHDEIYRTSEEKYAAIIAEIIDSH--K 437 (890)
Q Consensus 366 t~qn~Fr-~y~kl~G-mTGTa~te~~Ef~~iY~l~v~~iPtnkp~----~r~d~~d~v~~t~~~k~~ai~~~i~~~~--~ 437 (890)
T Consensus 301 ~~~~Yl~~l~e~~~~~~sk~a~~l---~~d---------~~~~~al~~~~~~~~~-~v---~HPKl~~l~eilke~~~k~ 364 (542)
T COG1111 301 PFYQYLEKLEEEATKGGSKAAKSL---LAD---------PYFKRALRLLIRADES-GV---EHPKLEKLREILKEQLEKN 364 (542)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHH---HCC---------HHHHHHHHHHHHHCCC-CC---CCCCHHHHHHHHHHHHHCC
T ss_conf 999999999987503520778987---538---------2047999999974003-68---8961899999999997238
Q ss_pred CCCEEEEEEHHHHHHHHHHHHHHHCCCCHH-H------HHHHH--HHHHHHHHHHHCCC-CCCEEEEEECCCCCCCCCCC
Q ss_conf 099079861116789999999986077102-2------31022--47788888753055-87048875024466554027
Q gi|254780327|r 438 KGQPVLVGTPSIEKSEYLASQLRKHKFTKF-Q------ILNAL--YHEKEAYIISQAGI-PGAVTIATNMAGRGTDIQLG 507 (890)
Q Consensus 438 ~grpvLvgt~sve~Se~ls~~L~~~~~~~h-~------vLNAk--~~~~Ea~Iia~AG~-~g~vTiATNMAGRGTDI~Lg 507 (890)
T Consensus 365 ~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp-- 442 (542)
T COG1111 365 GDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIP-- 442 (542)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCC--
T ss_conf 985599996147589999999985287520688611454556665888999999998657851899812322467887--
Q ss_pred CCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEE
Q ss_conf 6755788865113575530089999999987764333454076279982677532335542054345668672389984
Q gi|254780327|r 508 GNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLS 586 (890)
Q Consensus 508 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~S 586 (890)
T Consensus 443 -~----------------------------------------vDlVifYEpvpSeIR~IQR~GRTGR~-r~Grv~vLvt 479 (542)
T COG1111 443 -E----------------------------------------VDLVIFYEPVPSEIRSIQRKGRTGRK-RKGRVVVLVT 479 (542)
T ss_pred -C----------------------------------------CCEEEEECCCCHHHHHHHHHCCCCCC-CCCEEEEEEE
T ss_conf -6----------------------------------------56799956885788999860744557-7974999996