HHsearch alignment for GI: 254780327 and conserved domain: COG1200
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription].
Probab=96.13 E-value=0.16 Score=31.78 Aligned_cols=203 Identities=27% Similarity=0.294 Sum_probs=112.6
Q ss_pred HHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCH
Q ss_conf 99985269731610893789755458515686211234899999973024843125664348899830320000134305
Q gi|254780327|r 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTAS 385 (890)
Q Consensus 306 A~~~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~ 385 (890)
T Consensus 372 THALiQd~V~F~--~LgLVIiDEQ---------HRFGV~QR~~L~~KG~~------------------~Ph~LvMTATPI 422 (677)
T COG1200 372 THALIQDKVEFH--NLGLVIIDEQ---------HRFGVHQRLALREKGEQ------------------NPHVLVMTATPI 422 (677)
T ss_pred CCHHHHCCEEEC--CEEEEEEECC---------CCCCHHHHHHHHHHCCC------------------CCCEEEEECCCC
T ss_conf 221220450442--0238997252---------10229999999973789------------------996799957985
Q ss_pred HHHHHHHHHHCCCEEEE---CCC-CCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-----
Q ss_conf 48999998719967980---789-962243020342237788999999999999740990798611167899999-----
Q gi|254780327|r 386 TEAEELANIYNLDVIEV---PTN-VPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLA----- 456 (890)
Q Consensus 386 te~~Ef~~iY~l~v~~i---Ptn-kp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls----- 456 (890)
T Consensus 423 PRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~----~---~~~~~v~e~i~~ei~~GrQaY~VcPLIeeSE~l~l~~a~ 495 (677)
T COG1200 423 PRTLALTAFGDLDVSIIDELPPGRKPITTVVIP----H---ERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQAAE 495 (677)
T ss_pred HHHHHHHHHCCCCCHHHCCCCCCCCCEEEEEEC----C---CCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHH
T ss_conf 078898886146301112579899740899964----4---447999999999997499799995253543311365499
Q ss_pred ---HHHHHCC-CCHHHHHHHH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHH
Q ss_conf ---9998607-7102231022--477888887530558704887502446655402767557888651135755300899
Q gi|254780327|r 457 ---SQLRKHK-FTKFQILNAL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKR 530 (890)
Q Consensus 457 ---~~L~~~~-~~~h~vLNAk--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~ 530 (890)
T Consensus 496 ~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVP---nA-------------------- 552 (677)
T COG1200 496 ELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVP---NA-------------------- 552 (677)
T ss_pred HHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEEEEEEECCCCC---CC--------------------
T ss_conf 9999999870546367775689867799999999808876899813899523578---87--------------------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEE-EECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECC
Q ss_conf 999999877643334540762799-8267753233554205434566867238998423
Q gi|254780327|r 531 IKMIQEEVQSLKEKAIVAGGLYVI-STERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQ 588 (890)
Q Consensus 531 ~~~~~~~~~~~~~~v~~~GGL~Vi-gterhesrRid~QlrGRagRQGdpG~s~f~~Sle 588 (890)
T Consensus 553 -------------------TvMVIe~AERFGLaQ-LHQLRGRVGRG~~-qSyC~Ll~~~ 590 (677)
T COG1200 553 -------------------TVMVIENAERFGLAQ-LHQLRGRVGRGDL-QSYCVLLYKP 590 (677)
T ss_pred -------------------EEEEEECHHHHHHHH-HHHHCCCCCCCCC-CEEEEEEECC
T ss_conf -------------------079996543303788-8875265578875-4489999679