HHsearch alignment for GI: 254780327 and conserved domain: COG1202

>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=96.44  E-value=0.0072  Score=42.80  Aligned_cols=194  Identities=23%  Similarity=0.230  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf             35899999999998422888838989999999999999973--998889-669999999999576608768447999999
Q gi|254780327|r   19 RRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINN--GETLDD-LLVPAFAVVREVARRTLGMRPFDVQLLGGM   95 (890)
Q Consensus        19 ~~l~~~~~~~~~in~~e~~~~~lsd~~l~~~t~~~~~~~~~--g~~l~~-~l~eafa~~rea~~R~lg~~~~dvQl~g~~   95 (890)
T Consensus       151 rlL~~~rdlDkvl~ml~p~fdP~~~pE~Tr-yD~v~a~~~~~~r~~vdeLdipe~fk---~~lk~~G~~eLlPVQ~laVe  226 (830)
T COG1202         151 RLLHKFRDLDKVLEMLDPRFDPLEDPELTR-YDEVTAETDEVERVPVDELDIPEKFK---RMLKREGIEELLPVQVLAVE  226 (830)
T ss_pred             HHHHHHCCHHHHHHHHCCCCCCCCCCCCCC-CEEEECCCCCCCCCCCCCCCCCHHHH---HHHHHCCCCEECCHHHHHHH
T ss_conf             999973259999987385678644743201-00132354556665353468759999---99986386443023465566


Q ss_pred             H-HCCCC--EEEECCCCCHHHHHHHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH---
Q ss_conf             9-70794--506733680689999999998607-9995697469277387599999999882943676359879889---
Q gi|254780327|r   96 I-LHKGC--VAEMKTGEGKTLAAVLPVYLNALS-GKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDK---  168 (890)
Q Consensus        96 ~-l~~g~--iaem~TGEGKTL~a~l~~~lnal~-g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~---  168 (890)
T Consensus       227 ~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~  306 (830)
T COG1202         227 AGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE  306 (830)
T ss_pred             HCCCCCCCEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCC
T ss_conf             14405773499940577751477763738788378728997316876311189999986501662788842345224677


Q ss_pred             ---HHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCC
Q ss_conf             ---974025635334434321112214320000221026674388612035456430242
Q gi|254780327|r  169 ---RRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTP  225 (890)
Q Consensus       169 ---r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartP  225 (890)
T Consensus       307 pv~~~t~~dADIIVGTY--EGiD~lLRt------g~~lgdiGtVVIDEiHt-L~deERG~  357 (830)
T COG1202         307 PVVVDTSPDADIIVGTY--EGIDYLLRT------GKDLGDIGTVVIDEIHT-LEDEERGP  357 (830)
T ss_pred             CCCCCCCCCCCEEEEEC--HHHHHHHHC------CCCCCCCCEEEEEEEEE-CCCHHCCC
T ss_conf             53568998776798611--107899870------78555443599650120-44010163