HHsearch alignment for GI: 254780327 and conserved domain: COG1202
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only].
Probab=96.44 E-value=0.0072 Score=42.80 Aligned_cols=194 Identities=23% Similarity=0.230 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHC--CCCHHH-HHHHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q ss_conf 35899999999998422888838989999999999999973--998889-669999999999576608768447999999
Q gi|254780327|r 19 RRLRPYYAKVIAINELEKEISHLSDDSLANKTSEFKERINN--GETLDD-LLVPAFAVVREVARRTLGMRPFDVQLLGGM 95 (890)
Q Consensus 19 ~~l~~~~~~~~~in~~e~~~~~lsd~~l~~~t~~~~~~~~~--g~~l~~-~l~eafa~~rea~~R~lg~~~~dvQl~g~~ 95 (890)
T Consensus 151 rlL~~~rdlDkvl~ml~p~fdP~~~pE~Tr-yD~v~a~~~~~~r~~vdeLdipe~fk---~~lk~~G~~eLlPVQ~laVe 226 (830)
T COG1202 151 RLLHKFRDLDKVLEMLDPRFDPLEDPELTR-YDEVTAETDEVERVPVDELDIPEKFK---RMLKREGIEELLPVQVLAVE 226 (830)
T ss_pred HHHHHHCCHHHHHHHHCCCCCCCCCCCCCC-CEEEECCCCCCCCCCCCCCCCCHHHH---HHHHHCCCCEECCHHHHHHH
T ss_conf 999973259999987385678644743201-00132354556665353468759999---99986386443023465566
Q ss_pred H-HCCCC--EEEECCCCCHHHHHHHHHHHHHHC-CCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHH---
Q ss_conf 9-70794--506733680689999999998607-9995697469277387599999999882943676359879889---
Q gi|254780327|r 96 I-LHKGC--VAEMKTGEGKTLAAVLPVYLNALS-GKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDK--- 168 (890)
Q Consensus 96 ~-l~~g~--iaem~TGEGKTL~a~l~~~lnal~-g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~--- 168 (890)
T Consensus 227 ~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~ 306 (830)
T COG1202 227 AGLLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREE 306 (830)
T ss_pred HCCCCCCCEEEEECCCCCCCHHHHHHCCHHHHHCCCEEEEEEHHHHHHCCHHHHHHHHHHCCCCEEEEEECHHHHCCCCC
T ss_conf 14405773499940577751477763738788378728997316876311189999986501662788842345224677
Q ss_pred ---HHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCC
Q ss_conf ---974025635334434321112214320000221026674388612035456430242
Q gi|254780327|r 169 ---RRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTP 225 (890)
Q Consensus 169 ---r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartP 225 (890)
T Consensus 307 pv~~~t~~dADIIVGTY--EGiD~lLRt------g~~lgdiGtVVIDEiHt-L~deERG~ 357 (830)
T COG1202 307 PVVVDTSPDADIIVGTY--EGIDYLLRT------GKDLGDIGTVVIDEIHT-LEDEERGP 357 (830)
T ss_pred CCCCCCCCCCCEEEEEC--HHHHHHHHC------CCCCCCCCEEEEEEEEE-CCCHHCCC
T ss_conf 53568998776798611--107899870------78555443599650120-44010163