HHsearch alignment for GI: 254780327 and conserved domain: COG1203
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms].
Probab=92.91 E-value=0.87 Score=25.81 Aligned_cols=126 Identities=17% Similarity=0.138 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHCCC------CEEEECCCCCHHHHHHHHHHHHHHC-----CCCCEEECC---CCHHHHHHHHHHHHHHHH
Q ss_conf 44799999997079------4506733680689999999998607-----999569746---927738759999999988
Q gi|254780327|r 87 FDVQLLGGMILHKG------CVAEMKTGEGKTLAAVLPVYLNALS-----GKGVHVVTV---NDYLARRDSNTMSAIYKF 152 (890)
Q Consensus 87 ~dvQl~g~~~l~~g------~iaem~TGEGKTL~a~l~~~lnal~-----g~~vhvvTv---NdyLA~RDa~~m~~~y~~ 152 (890)
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~----~~~~ 272 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKE----IFGL 272 (733)
T ss_pred HHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHH----HHCC
T ss_conf 355679999987322557518999168887199999999997531135456289965589999999999987----5123
Q ss_pred HCCCEEEECCCCCHHHHHHHCCCC-----CCCCCCCCCCCCCCHHHHHHCHHHHC----------C--CCCCEEEEECCH
Q ss_conf 294367635987988997402563-----53344343211122143200002210----------2--667438861203
Q gi|254780327|r 153 LGLSTGVVFHDLSDDKRRAAYACD-----ITYITNNELGFDYLRDNMQYRRVDMV----------Q--RGHNFAIVDEVD 215 (890)
Q Consensus 153 lglsvg~~~~~~~~~~r~~~Y~~d-----i~Y~t~~e~gfDyLrDnm~~~~~~~v----------~--r~~~~aivDEvD 215 (890)
T Consensus 273 ~~~~~~~-~h~~-~--~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h 348 (733)
T COG1203 273 FSVIGKS-LHSS-S--KEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVH 348 (733)
T ss_pred CCCCCCC-CCCC-C--HHHHHHCCCCCCCEEEEECCCCCCCCCCCEEECHHHHHHHHHCCCCCHHHHHHHHCCEEEECHH
T ss_conf 5543310-0131-0--2556517010022588812422362045222069998557404667257788764677874275
Q ss_pred HHHHH
Q ss_conf 54564
Q gi|254780327|r 216 SIFID 220 (890)
Q Consensus 216 SiLiD 220 (890)
T Consensus 349 ~~~~~ 353 (733)
T COG1203 349 LYADE 353 (733)
T ss_pred HCCCC
T ss_conf 41654