HHsearch alignment for GI: 254780327 and conserved domain: COG4098
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair].
Probab=94.28 E-value=0.38 Score=28.75 Aligned_cols=109 Identities=31% Similarity=0.437 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHHHHHHHCCCCCC--EEEEEECCCC
Q ss_conf 99999999974099079861116789999999986077102----23102247788888753055870--4887502446
Q gi|254780327|r 427 AIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKF----QILNALYHEKEAYIISQAGIPGA--VTIATNMAGR 500 (890)
Q Consensus 427 ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h----~vLNAk~~~~Ea~Iia~AG~~g~--vTiATNMAGR 500 (890)
T Consensus 293 kl~~~lekq~~~~~P~liF~p~I~~~eq~a~~lk~-~~-~~~~i~~Vhs~d~~R~E--kV-~~fR~G~~~lLiTTTILER 367 (441)
T COG4098 293 KLKRWLEKQRKTGRPVLIFFPEIETMEQVAAALKK-KL-PKETIASVHSEDQHRKE--KV-EAFRDGKITLLITTTILER 367 (441)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHH-HC-CCCCEEEEECCCCCHHH--HH-HHHHCCCEEEEEEEEHHHC
T ss_conf 99999999874388289992505889999999986-18-86421565336701789--99-9987586389998440332
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECC---CCCHHHHHHHCCCCCCCCC
Q ss_conf 6554027675578886511357553008999999998776433345407627998267---7532335542054345668
Q gi|254780327|r 501 GTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTER---HESRRIDNQLRGRSGRQGD 577 (890)
Q Consensus 501 GTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigter---hesrRid~QlrGRagRQGd 577 (890)
T Consensus 368 GVTfp---~---------------------------------------vdV~Vlgaeh~vfTesa--LVQIaGRvGRs~~ 403 (441)
T COG4098 368 GVTFP---N---------------------------------------VDVFVLGAEHRVFTESA--LVQIAGRVGRSLE 403 (441)
T ss_pred CCCCC---C---------------------------------------CEEEEECCCCCCCCHHH--HHHHHHHCCCCCC
T ss_conf 66435---6---------------------------------------23999547764201889--9997523167876
Q ss_pred --CCCEEEE
Q ss_conf --6723899
Q gi|254780327|r 578 --PGRSKFY 584 (890)
Q Consensus 578 --pG~s~f~ 584 (890)
T Consensus 404 ~PtGdv~FF 412 (441)
T COG4098 404 RPTGDVLFF 412 (441)
T ss_pred CCCCCEEEE
T ss_conf 898758999