HHsearch alignment for GI: 254780327 and conserved domain: KOG0340

Probab=97.94  E-value=0.0041  Score=44.83  Aligned_cols=135  Identities=27%  Similarity=0.310  Sum_probs=90.0

Q ss_pred             HHCCCC-CCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHCCC----CCEEECCCCHHHHHHHHHHHHHHHH
Q ss_conf             660876-8447999999970794--50673368068999999999860799----9569746927738759999999988
Q gi|254780327|r   80 RTLGMR-PFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALSGK----GVHVVTVNDYLARRDSNTMSAIYKF  152 (890)
Q Consensus        80 R~lg~~-~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~g~----~vhvvTvNdyLA~RDa~~m~~~y~~  152 (890)
T Consensus        23 ~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPi-l~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~  101 (442)
T KOG0340          23 KALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPI-LNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKL  101 (442)
T ss_pred             HHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH-HHHHCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf             9835889982676524878546631031346887411222787-776133887606999545288888888999984564


Q ss_pred             HCCCEEEECCCCCHH--HHHHHCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHH
Q ss_conf             294367635987988--997402563533443432111221432000022102667438861203545
Q gi|254780327|r  153 LGLSTGVVFHDLSDD--KRRAAYACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIF  218 (890)
Q Consensus       153 lglsvg~~~~~~~~~--~r~~~Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiL  218 (890)
T Consensus       102 l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRla-d~l~sn~~~--~~~~~~rlkflVlDEADrvL  166 (442)
T KOG0340         102 LNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLA-DHLSSNLGV--CSWIFQRLKFLVLDEADRVL  166 (442)
T ss_pred             CCCEEEEEECCHHHHHHHHHCCCCCCEEECCCCCCC-CCCCCCCCC--CHHHHHCEEEEEECCHHHHH
T ss_conf             563279997568876454442669875751763335-411268765--52555300467741302654