HHsearch alignment for GI: 254780327 and conserved domain: PRK01297
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.58 E-value=9.3e-12 Score=115.34 Aligned_cols=334 Identities=21% Similarity=0.228 Sum_probs=205.8
Q ss_pred CC-CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHCC----------CCCEEECCCCHHHHHHHHHHHH
Q ss_conf 08-768447999999970794--5067336806899999999986079----------9956974692773875999999
Q gi|254780327|r 82 LG-MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALSG----------KGVHVVTVNDYLARRDSNTMSA 148 (890)
Q Consensus 82 lg-~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~g----------~~vhvvTvNdyLA~RDa~~m~~ 148 (890)
T Consensus 102 ~Gf~~PTpIQ~~aIP~iL~GkDvi~~A~TGSGKTlAyLLPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~QI~~~~~~ 181 (472)
T PRK01297 102 LGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 181 (472)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCHHCCCCCCEEEEECCCHHHHHHHHHHHHH
T ss_conf 79999999999999999769988998999867999999999999971775101136895299987999999999999999
Q ss_pred HHHHHCCCEEEECCCCCHHHHHHH---CCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCC
Q ss_conf 998829436763598798899740---25635334434321112214320000221026674388612035456430242
Q gi|254780327|r 149 IYKFLGLSTGVVFHDLSDDKRRAA---YACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTP 225 (890)
Q Consensus 149 ~y~~lglsvg~~~~~~~~~~r~~~---Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartP 225 (890)
T Consensus 182 L~~~~~l~v~~~~GG~~~~~q~~~l~~~~~dIvVaTPGRL~-~l~~~~------~~~l~~v~~lVlDEAD~LL-d~gf-- 251 (472)
T PRK01297 182 LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLL-DFNQRG------EVHLDMVEVMVLDEADRML-DMGF-- 251 (472)
T ss_pred HHCCCCCEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHH-HHHCCC------CEECCCCEEEEEECHHHHH-CCCC--
T ss_conf 74627976999978988799999985589988997979999-874348------2542552299998731210-2575--
Q ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 15238876524787874345443013551441444432201467999986310168845247576001338999999999
Q gi|254780327|r 226 LIISGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALK 305 (890)
Q Consensus 226 LiIsg~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~ 305 (890)
T Consensus 252 -------------~~~v~~Il~~~p~~------~~rQ~~l-----------------------fSAT---l~~~v~~l~- 285 (472)
T PRK01297 252 -------------IPQVRQIIRQTPRK------EERQTLL-----------------------FSAT---FTDDVMNLA- 285 (472)
T ss_pred -------------HHHHHHHHHHCCCC------CCCEEEE-----------------------EECC---CCHHHHHHH-
T ss_conf -------------99999999968985------5716999-----------------------8525---778999999-
Q ss_pred HHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCH
Q ss_conf 99985269731610893789755458515686211234899999973024843125664348899830320000134305
Q gi|254780327|r 306 SHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTAS 385 (890)
Q Consensus 306 A~~~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~ 385 (890)
T Consensus 286 -~~~-~~~-------p~~v~i~-----------------------------~~~~~~~~v~-q~---------------- 310 (472)
T PRK01297 286 -KQW-TTD-------PAIVEIE-----------------------------PENVASDTVE-QH---------------- 310 (472)
T ss_pred -HHH-CCC-------CEEEEEC-----------------------------CCCCCCCCEE-EE----------------
T ss_conf -997-799-------8899965-----------------------------7766777602-89----------------
Q ss_pred HHHHHHHHHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCC
Q ss_conf 48999998719967980789962243020342237788999999999999740990798611167899999999860771
Q gi|254780327|r 386 TEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFT 465 (890)
Q Consensus 386 te~~Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~ 465 (890)
T Consensus 311 ------------------------------~~~~~~~dk~~~L~~ll~-~~~~-~k~IIF~nt~~~~~~l~~~L~~~g~- 357 (472)
T PRK01297 311 ------------------------------VYAVAGSDKYKLLYNLVT-QNPW-ERVMVFANRKDEVRRIEERLVKDGI- 357 (472)
T ss_pred ------------------------------EEECCHHHHHHHHHHHHH-HCCC-CCEEEECCCHHHHHHHHHHHHHCCC-
T ss_conf ------------------------------998188899999999998-4798-7368961749999999987654496-
Q ss_pred HHHHHHHH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02231022--4778888875305587048875024466554027675578886511357553008999999998776433
Q gi|254780327|r 466 KFQILNAL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKE 543 (890)
Q Consensus 466 ~h~vLNAk--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 543 (890)
T Consensus 358 ~~~~lhg~l~q~~R~~~l~~F~~g~~~iLVaTDvaaRGLDi~-------------------------------------- 399 (472)
T PRK01297 358 NAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHID-------------------------------------- 399 (472)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCCEEEECCHHHCCCCCC--------------------------------------
T ss_conf 168643778999999999999769996998866133667757--------------------------------------
Q ss_pred HHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHHH
Q ss_conf 345407627998267753233554205434566867238998423014542021013445421
Q gi|254780327|r 544 KAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLRK 606 (890)
Q Consensus 544 ~v~~~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~Fgsdri~~lm~k 606 (890)
T Consensus 400 -----~V~~VInyD~P~~~~~YIHRiGRTGRaG~~G~aisfv~~~d~~~~~----~ie~~l~~ 453 (472)
T PRK01297 400 -----GISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGEDDAFQLP----EIEELLGR 453 (472)
T ss_pred -----CCCEEEEECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHHHHH----HHHHHHCC
T ss_conf -----8888999689897676010265312689963799986388999999----99999889