HHsearch alignment for GI: 254780327 and conserved domain: PRK04837

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional.
Probab=99.56  E-value=1.4e-11  Score=113.89  Aligned_cols=331  Identities=21%  Similarity=0.277  Sum_probs=200.6

Q ss_pred             CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHC-----CC-----CCEEECCCCHHHHHHHHHHHHHHH
Q ss_conf             768447999999970794--506733680689999999998607-----99-----956974692773875999999998
Q gi|254780327|r   84 MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALS-----GK-----GVHVVTVNDYLARRDSNTMSAIYK  151 (890)
Q Consensus        84 ~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~-----g~-----~vhvvTvNdyLA~RDa~~m~~~y~  151 (890)
T Consensus        30 ~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~~ll~~~~~~~~~~~~p~aLIL~PTRELa~Qi~~~~~~l~~  109 (423)
T PRK04837         30 EYCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHHLLSHPAPEGRKVNQPRALIMAPTRELAVQIHADAEPLAQ  109 (423)
T ss_pred             CCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf             99999999999999679988998999874999999999999983745334556786189993889999999999999743


Q ss_pred             HHCCCEEEECCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEEC
Q ss_conf             829436763598798899740--256353344343211122143200002210266743886120354564302421523
Q gi|254780327|r  152 FLGLSTGVVFHDLSDDKRRAA--YACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIIS  229 (890)
Q Consensus       152 ~lglsvg~~~~~~~~~~r~~~--Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIs  229 (890)
T Consensus       110 ~~~l~~~~~~GG~~~~~q~~~l~~~~dIlV~TPgRL-~d~~~~~------~~~l~~i~~lVlDEAD~ll-d~--------  173 (423)
T PRK04837        110 ATGLKLGLAYGGEGYDKQLKVLESGVDILIGTTGRL-IDYAKQN------HINLGAIQVVVLDEADRMF-DL--------  173 (423)
T ss_pred             CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECHHHH-HHHHHHC------CCCCCCCEEEEEECHHHHH-HC--------
T ss_conf             258459999899887999998717999899891899-9998642------2123664289963446543-02--------


Q ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             88765247878743454430135514414444322014679999863101688452475760013389999999999998
Q gi|254780327|r  230 GPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTL  309 (890)
Q Consensus       230 g~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~  309 (890)
T Consensus       174 gF-------~~~i~~i~~~~p~~------~~r~~~-----------------------lfSATl---~~~v~~-l-a~~-  211 (423)
T PRK04837        174 GF-------IKDIRWLFRRMPPA------NQRLNM-----------------------LFSATL---SYRVRE-L-AFE-  211 (423)
T ss_pred             CC-------HHHHHHHHHHCCCC------HHEEEE-----------------------EEECCC---CHHHHH-H-HHH-
T ss_conf             63-------99999999968962------210899-----------------------970368---889999-9-999-


Q ss_pred             HHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHH
Q ss_conf             52697316108937897554585156862112348999999730248431256643488998303200001343054899
Q gi|254780327|r  310 FLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAE  389 (890)
Q Consensus       310 ~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~  389 (890)
T Consensus       212 ~l~~p~~i~-------v~-----------------------------~~~~~~~~i~-----------------------  232 (423)
T PRK04837        212 HMNNPEYVE-------VE-----------------------------PEQKTGHRIK-----------------------  232 (423)
T ss_pred             HCCCCEEEE-------EC-----------------------------CCCCCCCCEE-----------------------
T ss_conf             778987999-------65-----------------------------7765665426-----------------------


Q ss_pred             HHHHHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH
Q ss_conf             99987199679807899622430203422377889999999999997409907986111678999999998607710223
Q gi|254780327|r  390 ELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQI  469 (890)
Q Consensus       390 Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~v  469 (890)
T Consensus       233 ------------------------~~~~~~~~~~K~~~L~~ll~~~~--~~k~iIF~nt~~~~~~l~~~L~~~g~-~~~~  285 (423)
T PRK04837        233 ------------------------EELFYPSNEEKMRLLQTLIEEEW--PDRAIIFANTKHRCEEIWGHLAADGH-RVGL  285 (423)
T ss_pred             ------------------------EEEEEECHHHHHHHHHHHHHHHC--CCCEEEECCHHHHHHHHHHHHHHCCC-CEEE
T ss_conf             ------------------------99999172779999999998408--87468861628889999999976598-1787


Q ss_pred             HHHH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             1022--47788888753055870488750244665540276755788865113575530089999999987764333454
Q gi|254780327|r  470 LNAL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIV  547 (890)
Q Consensus       470 LNAk--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  547 (890)
T Consensus       286 lhg~~~q~~R~~~l~~F~~g~~~vLVaTDvaaRGLDi~------------------------------------------  323 (423)
T PRK04837        286 LTGDVPQKKRLRILEQFTRGDLDILVATDVAARGLHIP------------------------------------------  323 (423)
T ss_pred             ECCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC------------------------------------------
T ss_conf             22545799999999999769998998700432777726------------------------------------------


Q ss_pred             CCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHHHHHHCCHHHHHHHH
Q ss_conf             0762799826775323355420543456686723899842301454202101344542
Q gi|254780327|r  548 AGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDLMRIFGSPRMESFLR  605 (890)
Q Consensus       548 ~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l~r~Fgsdri~~lm~  605 (890)
T Consensus       324 -~V~~VInyD~P~~~~~YiHRiGRTgRaG~~G~aitf~~~~~-~~~l~---~ie~~~~  376 (423)
T PRK04837        324 -DVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISFACEEY-ALNLP---AIETYIG  376 (423)
T ss_pred             -CCCEEEEECCCCCHHHEECCCCHHHCCCCCEEEEEEECHHH-HHHHH---HHHHHHC
T ss_conf             -79889996998974551004654127899468999873999-99999---9999968