HHsearch alignment for GI: 254780327 and conserved domain: PRK11057
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional.
Probab=99.36 E-value=2.7e-08 Score=87.06 Aligned_cols=319 Identities=18% Similarity=0.248 Sum_probs=190.9
Q ss_pred HHHHHHHHCCC---CCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
Q ss_conf 99995766087---684479999999707945067336806899999999986079995697469277387599999999
Q gi|254780327|r 74 VREVARRTLGM---RPFDVQLLGGMILHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIY 150 (890)
Q Consensus 74 ~rea~~R~lg~---~~~dvQl~g~~~l~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y 150 (890)
T Consensus 13 a~~~L~~~FG~~~Fr~~Q~e~i~~~l~g~D~l~~mpTG~GKSlcyQlPal~--~~g-~tiVisP---LisLm~DQv~~L- 85 (607)
T PRK11057 13 AKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALV--LDG-LTLVVSP---LISLMKDQVDQL- 85 (607)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH--CCC-CEEEECC---HHHHHHHHHHHH-
T ss_conf 999999866984345769999999986998899878995597999999987--799-8899868---799999999999-
Q ss_pred HHHCCCEEEECCCCCHHHHHHHCCC------CCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCC
Q ss_conf 8829436763598798899740256------3533443432111221432000022102667438861203545643024
Q gi|254780327|r 151 KFLGLSTGVVFHDLSDDKRRAAYAC------DITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEART 224 (890)
Q Consensus 151 ~~lglsvg~~~~~~~~~~r~~~Y~~------di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeart 224 (890)
T Consensus 86 ~~~gi~a~~l~s~~~~~e~~~~~~~~~~g~~~llyvtPErl~~~~~~~~l-------~~~~i~~~viDEAHcvs------ 152 (607)
T PRK11057 86 LANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHL-------AHWNPVLLAVDEAHCIS------ 152 (607)
T ss_pred HHCCCCEEEECCCCCHHHHHHHHHHHHCCCCCEEEECHHHHCCHHHHHHH-------HHCCCCEEEEEHHHHHH------
T ss_conf 97899299956999999999999999759987999885585697899999-------71886648853066675------
Q ss_pred CEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 21523887652478787434544301355144144443220146799998631016884524757600133899999999
Q gi|254780327|r 225 PLIISGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNAL 304 (890)
Q Consensus 225 PLiIsg~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al 304 (890)
T Consensus 153 -----~WGhdFRp~Y~~l~~l~~~~~------------------------------------------------------ 173 (607)
T PRK11057 153 -----QWGHDFRPEYAALGQLRQRFP------------------------------------------------------ 173 (607)
T ss_pred -----HCCCCCHHHHHHHHHHHHHCC------------------------------------------------------
T ss_conf -----415500388999999999769------------------------------------------------------
Q ss_pred HHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCC
Q ss_conf 99998526973161089378975545851568621123489999997302484312566434889983032000013430
Q gi|254780327|r 305 KSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTA 384 (890)
Q Consensus 305 ~A~~~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa 384 (890)
T Consensus 174 --------------------------------------------------------------------~~p-~~AlTATA 184 (607)
T PRK11057 174 --------------------------------------------------------------------TLP-FMALTATA 184 (607)
T ss_pred --------------------------------------------------------------------CCC-EEEEEECC
T ss_conf --------------------------------------------------------------------997-48999636
Q ss_pred HHH-HHHHHHHHCC---CEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHH
Q ss_conf 548-9999987199---679807899622430203422377889999999999997409907986111678999999998
Q gi|254780327|r 385 STE-AEELANIYNL---DVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLR 460 (890)
Q Consensus 385 ~te-~~Ef~~iY~l---~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~ 460 (890)
T Consensus 185 t~~v~~di~~~L~l~~~~~~~~~f~RpNl~~~v~---~--~~~~~~~~~~~~~~--~~~~sgIIYc~trk~~e~la~~L~ 257 (607)
T PRK11057 185 DDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLM---E--KFKPLDQLMRYVQE--QRGKSGIIYCNSRAKVEDTAARLQ 257 (607)
T ss_pred CHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEEE---E--CCCHHHHHHHHHHH--CCCCCEEEEECCHHHHHHHHHHHH
T ss_conf 8789999999708999807825778887414555---4--47739999999870--689977999692899999999998
Q ss_pred HCCCCHHHHHHHHHHHHHHHHHHHC--CCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 6077102231022477888887530--55870488750244665540276755788865113575530089999999987
Q gi|254780327|r 461 KHKFTKFQILNALYHEKEAYIISQA--GIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEV 538 (890)
Q Consensus 461 ~~~~~~h~vLNAk~~~~Ea~Iia~A--G~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (890)
T Consensus 258 ~~G~-~~~~YHagl~~~~R~~~q~~f~~~~~~vivAT~AFGMGIdk~---d----------------------------- 304 (607)
T PRK11057 258 SRGI-SAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKP---N----------------------------- 304 (607)
T ss_pred HCCC-CEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCC---C-----------------------------
T ss_conf 5797-545305899978999999987568875899750110576777---7-----------------------------
Q ss_pred HHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 76433345407627998267753233554205434566867238998423014
Q gi|254780327|r 539 QSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591 (890)
Q Consensus 539 ~~~~~~v~~~GGL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l 591 (890)
T Consensus 305 -----------VR~ViH~~~P~s~e~yyQE~GRAGRDG~~a~c~l~y~~~D~~ 346 (607)
T PRK11057 305 -----------VRFVVHFDIPRNIESYYQETGRAGRDGLPAEAMLFYDPADMA 346 (607)
T ss_pred -----------CCEEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECHHHHH
T ss_conf -----------667997789999999999886352589854189985687899