HHsearch alignment for GI: 254780327 and conserved domain: PRK11448
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional.
Probab=95.39 E-value=0.055 Score=35.61 Aligned_cols=111 Identities=14% Similarity=0.213 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHCCC--EEEEEEHHHHHHHHHHHHHHHC---CC----------CHHHHHHHHHHHHHHHHHHH--CCC
Q ss_conf 9999999999974099--0798611167899999999860---77----------10223102247788888753--055
Q gi|254780327|r 425 YAAIIAEIIDSHKKGQ--PVLVGTPSIEKSEYLASQLRKH---KF----------TKFQILNALYHEKEAYIISQ--AGI 487 (890)
Q Consensus 425 ~~ai~~~i~~~~~~gr--pvLvgt~sve~Se~ls~~L~~~---~~----------~~h~vLNAk~~~~Ea~Iia~--AG~ 487 (890)
T Consensus 684 nr~v~~~l~~~~~~~~~gKTiIFA~~~~HAd~Iv~~l~e~F~~~y~~~~~~~~~~It~~~~~~~------~lI~~Fkn~~ 757 (1126)
T PRK11448 684 NRVVCEELAKYLDPTGEGKTLIFCVTDAHADMVVRLLKEAFKKKYGQVEDDAIIKITGDADKVQ------QLIRRFKNER 757 (1126)
T ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHH------HHHHHHCCCC
T ss_conf 9999999998458899987699927869999999999999886478767844899708884478------9999725789
Q ss_pred CCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC-CHHHHH
Q ss_conf 8704887502446655402767557888651135755300899999999877643334540762799826775-323355
Q gi|254780327|r 488 PGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHE-SRRIDN 566 (890)
Q Consensus 488 ~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~Vigterhe-srRid~ 566 (890)
T Consensus 758 ~P~IAVTVDmL~TGiDVP--------------------------------------------ei~nLVF~R~V~S~i~F~ 793 (1126)
T PRK11448 758 LPNIVVTVDLLTTGIDVP--------------------------------------------SICNLVFLRRVKSRILYE 793 (1126)
T ss_pred CCEEEEEECCCCCCCCCC--------------------------------------------CCEEEEEEEECCCHHHHH
T ss_conf 983899856210476664--------------------------------------------201688766756677866
Q ss_pred HHCCCCCCCCCC-CCEEEEE
Q ss_conf 420543456686-7238998
Q gi|254780327|r 567 QLRGRSGRQGDP-GRSKFYL 585 (890)
Q Consensus 567 QlrGRagRQGdp-G~s~f~~ 585 (890)
T Consensus 794 QMiGRGTRlc~~i~K~~F~I 813 (1126)
T PRK11448 794 QMKGRATRLCPDIGKTVFRI 813 (1126)
T ss_pred HHHCCCCCCCCCCCCCEEEE
T ss_conf 54167554376668766999