HHsearch alignment for GI: 254780327 and conserved domain: PRK11664

>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=93.28  E-value=0.35  Score=29.06  Aligned_cols=219  Identities=19%  Similarity=0.211  Sum_probs=103.7

Q ss_pred             EECCCEEEEECCCCCCCCCCCCCHHH-HHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
Q ss_conf             10893789755458515686211234-899999-9730248431256643488998303200001343054899999871
Q gi|254780327|r  318 VNRDEVVIIDEFTGRMMPGRRYSDGQ-HQALEA-KERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIY  395 (890)
Q Consensus       318 v~~~~v~ivDe~TGr~~~gr~~~~Gl-hQaiea-Ke~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~~iY  395 (890)
T Consensus       114 L~~~~~vI~DE~HER~l~~D-l~l~l~~~~~~~~r~dLklvvMSATld~~~~~~~~~-----------------------  169 (812)
T PRK11664        114 LSGVGLVILDEFHERSLQAD-LALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLP-----------------------  169 (812)
T ss_pred             CCCCCEEEEECCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCC-----------------------
T ss_conf             67788899957546875189-999999999986189828999847888488997589-----------------------


Q ss_pred             CCCEEEECCC-CCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH--HH
Q ss_conf             9967980789-962243020342237788999999999999740-9907986111678999999998607710223--10
Q gi|254780327|r  396 NLDVIEVPTN-VPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKK-GQPVLVGTPSIEKSEYLASQLRKHKFTKFQI--LN  471 (890)
Q Consensus       396 ~l~v~~iPtn-kp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~-grpvLvgt~sve~Se~ls~~L~~~~~~~h~v--LN  471 (890)
T Consensus       170 ~~~~i~~~gr~fpV~~~y~~~---~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~EI~~~~~~L~~~~~~~~~i~pL~  246 (812)
T PRK11664        170 DAPYIESEGRSFPVERRYQPL---PAHQRFDEAVAVATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVGSDVLLCPLY  246 (812)
T ss_pred             CCCEEEECCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf             998898787433115785468---85206999999999999735899889976998999999999863355780899644


Q ss_pred             H-HHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             2-24778888875305-587048875024466554027675578886511357553008999999998776433345407
Q gi|254780327|r  472 A-LYHEKEAYIISQAG-IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAG  549 (890)
Q Consensus       472 A-k~~~~Ea~Iia~AG-~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G  549 (890)
T Consensus       247 g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~---gV~~VIDsG~~r---------------------~~~~d~~~  302 (812)
T PRK11664        247 GALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIE---GIRLVVDSGLER---------------------VARFDPKT  302 (812)
T ss_pred             CCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEEC---CEEEEEECHHHH---------------------HHEECCCC
T ss_conf             789988987760679999537999502000202017---814897402234---------------------43234357


Q ss_pred             CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCC
Q ss_conf             6279982677532335542054345668672389984230
Q gi|254780327|r  550 GLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQD  589 (890)
Q Consensus       550 GL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD  589 (890)
T Consensus       303 g~~~L~~~-~iSkasa~QRaGRAGR~~-pG~cyRL~s~~~  340 (812)
T PRK11664        303 GLTRLETQ-RISQASMTQRAGRAGRLE-PGICLHLYAKEQ  340 (812)
T ss_pred             CCCEEEEE-ECCHHHHHCCCCCCCCCC-CCEEEEEECHHH
T ss_conf             97567677-045443531367678889-970787335988