HHsearch alignment for GI: 254780327 and conserved domain: PRK11664
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional.
Probab=93.28 E-value=0.35 Score=29.06 Aligned_cols=219 Identities=19% Similarity=0.211 Sum_probs=103.7
Q ss_pred EECCCEEEEECCCCCCCCCCCCCHHH-HHHHHH-HHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHH
Q ss_conf 10893789755458515686211234-899999-9730248431256643488998303200001343054899999871
Q gi|254780327|r 318 VNRDEVVIIDEFTGRMMPGRRYSDGQ-HQALEA-KERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEELANIY 395 (890)
Q Consensus 318 v~~~~v~ivDe~TGr~~~gr~~~~Gl-hQaiea-Ke~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef~~iY 395 (890)
T Consensus 114 L~~~~~vI~DE~HER~l~~D-l~l~l~~~~~~~~r~dLklvvMSATld~~~~~~~~~----------------------- 169 (812)
T PRK11664 114 LSGVGLVILDEFHERSLQAD-LALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLP----------------------- 169 (812)
T ss_pred CCCCCEEEEECCCCCCHHHH-HHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCC-----------------------
T ss_conf 67788899957546875189-999999999986189828999847888488997589-----------------------
Q ss_pred CCCEEEECCC-CCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHC-CCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH--HH
Q ss_conf 9967980789-962243020342237788999999999999740-9907986111678999999998607710223--10
Q gi|254780327|r 396 NLDVIEVPTN-VPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKK-GQPVLVGTPSIEKSEYLASQLRKHKFTKFQI--LN 471 (890)
Q Consensus 396 ~l~v~~iPtn-kp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~-grpvLvgt~sve~Se~ls~~L~~~~~~~h~v--LN 471 (890)
T Consensus 170 ~~~~i~~~gr~fpV~~~y~~~---~~~~~~~~~~~~~i~~~~~~~~G~iLvFLPG~~EI~~~~~~L~~~~~~~~~i~pL~ 246 (812)
T PRK11664 170 DAPYIESEGRSFPVERRYQPL---PAHQRFDEAVAVATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVGSDVLLCPLY 246 (812)
T ss_pred CCCEEEECCCCCCEEEEECCC---CCCCHHHHHHHHHHHHHHHCCCCCEEEECCCHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf 998898787433115785468---85206999999999999735899889976998999999999863355780899644
Q ss_pred H-HHHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 2-24778888875305-587048875024466554027675578886511357553008999999998776433345407
Q gi|254780327|r 472 A-LYHEKEAYIISQAG-IPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAG 549 (890)
Q Consensus 472 A-k~~~~Ea~Iia~AG-~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 549 (890)
T Consensus 247 g~l~~~~Q~~~~~~~~~g~rKvIlaTnIAEtSlTI~---gV~~VIDsG~~r---------------------~~~~d~~~ 302 (812)
T PRK11664 247 GALSLAEQQKAILPAPAGMRKVVLATNIAETSLTIE---GIRLVVDSGLER---------------------VARFDPKT 302 (812)
T ss_pred CCCCHHHHHHHHCCCCCCCEEEEEECCCHHCEEEEC---CEEEEEECHHHH---------------------HHEECCCC
T ss_conf 789988987760679999537999502000202017---814897402234---------------------43234357
Q ss_pred CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCC
Q ss_conf 6279982677532335542054345668672389984230
Q gi|254780327|r 550 GLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQD 589 (890)
Q Consensus 550 GL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD 589 (890)
T Consensus 303 g~~~L~~~-~iSkasa~QRaGRAGR~~-pG~cyRL~s~~~ 340 (812)
T PRK11664 303 GLTRLETQ-RISQASMTQRAGRAGRLE-PGICLHLYAKEQ 340 (812)
T ss_pred CCCEEEEE-ECCHHHHHCCCCCCCCCC-CCEEEEEECHHH
T ss_conf 97567677-045443531367678889-970787335988