HHsearch alignment for GI: 254780327 and conserved domain: PRK11776
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional.
Probab=99.46 E-value=1.6e-10 Score=105.30 Aligned_cols=319 Identities=21% Similarity=0.230 Sum_probs=200.7
Q ss_pred CC-CCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHHC----CCCCEEECCCCHHHHHHHHHHHHHHHHH-
Q ss_conf 08-768447999999970794--506733680689999999998607----9995697469277387599999999882-
Q gi|254780327|r 82 LG-MRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNALS----GKGVHVVTVNDYLARRDSNTMSAIYKFL- 153 (890)
Q Consensus 82 lg-~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal~----g~~vhvvTvNdyLA~RDa~~m~~~y~~l- 153 (890)
T Consensus 22 ~G~~~pTpIQ~~aIP~il~G~Dvi~~A~TGSGKTlAfllPil~-~l~~~~~~~qaLIL~PTRELa~QV~~~~~~l~~~~~ 100 (459)
T PRK11776 22 LGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQ-KLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIP 100 (459)
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH-HCCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHCC
T ss_conf 7999999899999999977998899889985899999999998-411367898599996759999999999999985058
Q ss_pred CCCEEEECCCCCHHHHHHH--CCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCC
Q ss_conf 9436763598798899740--25635334434321112214320000221026674388612035456430242152388
Q gi|254780327|r 154 GLSTGVVFHDLSDDKRRAA--YACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGP 231 (890)
Q Consensus 154 glsvg~~~~~~~~~~r~~~--Y~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~ 231 (890)
T Consensus 101 ~ikv~~l~GG~~~~~q~~~L~~~~~IvV~TPGRl~-d~l~~------~~l~l~~v~~lVlDEAD~mL-d~--------g- 163 (459)
T PRK11776 101 NIKVLTLCGGVPMGPQIGSLEHGAHIIVGTPGRIL-DHLRK------GTLDLDALNTLVLDEADRML-DM--------G- 163 (459)
T ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEEECCHHHH-HHHHC------CCCCCCCEEEEEEECCHHHH-CC--------C-
T ss_conf 82599998993279999997469999998958999-88751------66322310389970624543-27--------8-
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 76524787874345443013551441444432201467999986310168845247576001338999999999999852
Q gi|254780327|r 232 VEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFL 311 (890)
Q Consensus 232 ~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 311 (890)
T Consensus 164 ------F~~~i~~Il~~~p~--------~rQ~~l-----------------------fSAT~p---~~i~~-l-~~~~l- 200 (459)
T PRK11776 164 ------FQDAIDAIIRQAPA--------RRQTLL-----------------------FSATYP---EGIAA-I-SARFQ- 200 (459)
T ss_pred ------CHHHHHHHHHHCCC--------CCEEEE-----------------------EECCCC---HHHHH-H-HHHHC-
T ss_conf ------66889999986881--------302688-----------------------845689---89999-9-99977-
Q ss_pred CCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHH
Q ss_conf 69731610893789755458515686211234899999973024843125664348899830320000134305489999
Q gi|254780327|r 312 RNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGTASTEAEEL 391 (890)
Q Consensus 312 ~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGTa~te~~Ef 391 (890)
T Consensus 201 ~~p~-------~i~v~~~~--~~----------------------------~~I~-q~---------------------- 220 (459)
T PRK11776 201 RDPV-------EVKVESTH--DD----------------------------STIE-QR---------------------- 220 (459)
T ss_pred CCCE-------EEEECCCC--CC----------------------------CCCE-EE----------------------
T ss_conf 8989-------99967877--79----------------------------8637-99----------------------
Q ss_pred HHHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 98719967980789962243020342237788999999999999740990798611167899999999860771022310
Q gi|254780327|r 392 ANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILN 471 (890)
Q Consensus 392 ~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLN 471 (890)
T Consensus 221 ------------------------~~~v~~~~K~~~L~~ll~~-~-~~~~~IIFcntk~~v~~l~~~L~~~g~-~~~~lH 273 (459)
T PRK11776 221 ------------------------FYEVDPDERLPALQRLLLH-Y-RPESCVVFCNTKKECQEVADALNAQGF-SALALH 273 (459)
T ss_pred ------------------------EEEECHHHHHHHHHHHHHH-C-CCCCEEEEECCHHHHHHHHHHHHHCCC-CEEEEE
T ss_conf ------------------------9997718789999999973-6-876603761748999999999986799-689987
Q ss_pred HH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 22--4778888875305587048875024466554027675578886511357553008999999998776433345407
Q gi|254780327|r 472 AL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAG 549 (890)
Q Consensus 472 Ak--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G 549 (890)
T Consensus 274 g~m~q~~R~~~l~~F~~g~~~iLVaTDvaaRGIDi~-------------------------------------------~ 310 (459)
T PRK11776 274 GDLEQRDRDQVLVRFANRSCSVLVATDVAARGLDIK-------------------------------------------S 310 (459)
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEHHHHHCCCCCC-------------------------------------------C
T ss_conf 999999999999999779997998810434767713-------------------------------------------5
Q ss_pred CCEEEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCHH
Q ss_conf 627998267753233554205434566867238998423014
Q gi|254780327|r 550 GLYVISTERHESRRIDNQLRGRSGRQGDPGRSKFYLSLQDDL 591 (890)
Q Consensus 550 GL~VigterhesrRid~QlrGRagRQGdpG~s~f~~SleD~l 591 (890)
T Consensus 311 V~~VInyDlP~~~e~YvHRiGRTGRaG~~G~ait~vt~~e~~ 352 (459)
T PRK11776 311 LEAVINYELARDPEVHVHRIGRTGRAGSKGLALSLVAPEEMQ 352 (459)
T ss_pred CCEEEEECCCCCHHHHHHCCCHHHCCCCCEEEEEEECHHHHH
T ss_conf 988999789897455202052513789965799998689999