HHsearch alignment for GI: 254780327 and conserved domain: PRK13767
>PRK13767 ATP-dependent helicase; Provisional.
Probab=98.90 E-value=2.1e-05 Score=63.51 Aligned_cols=291 Identities=20% Similarity=0.168 Sum_probs=158.2
Q ss_pred CCCCCHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHHHHHH-----C---CCCCEEE--CCCCHHHHHH--------
Q ss_conf 8768447999999970794--50673368068999999999860-----7---9995697--4692773875--------
Q gi|254780327|r 83 GMRPFDVQLLGGMILHKGC--VAEMKTGEGKTLAAVLPVYLNAL-----S---GKGVHVV--TVNDYLARRD-------- 142 (890)
Q Consensus 83 g~~~~dvQl~g~~~l~~g~--iaem~TGEGKTL~a~l~~~lnal-----~---g~~vhvv--TvNdyLA~RD-------- 142 (890)
T Consensus 30 ~~~p~~~Q~~a~~~i~~G~~~Li~ApTGsGKTlAaflp~-l~~l~~~~~~~~~~~~~~~LyIsPLkAL~-~D~~r~L~~p 107 (878)
T PRK13767 30 FGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLGI-IDELFRLAEEGELEDSVYCIYVSPLRALN-NDIHRNLEEP 107 (878)
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHH-HHHHHHHCCCCCCCCCEEEEEECCHHHHH-HHHHHHHHHH
T ss_conf 799998999999999679988998999813999999999-99998500036778872899968479889-9999988869
Q ss_pred HHHHHHHHHHHC-----CCEEEECCCCCHHHHHHHCC--CCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCH
Q ss_conf 999999998829-----43676359879889974025--63533443432111221432000022102667438861203
Q gi|254780327|r 143 SNTMSAIYKFLG-----LSTGVVFHDLSDDKRRAAYA--CDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVD 215 (890)
Q Consensus 143 a~~m~~~y~~lg-----lsvg~~~~~~~~~~r~~~Y~--~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvD 215 (890)
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~vr~GDT~~~er~r~~~~pp~ILiTTPEsL~lll~~~~-----~~~~l~~l~~VIvDE~H 182 (878)
T PRK13767 108 LEEIREIAKERGIELPEIRHAVRTGDTSSYEKQKMLRKPPHILITTPETLAILLNSPK-----FREKLRTVKWVIVDEIH 182 (878)
T ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCEEECCHHHHHHHHCCHH-----HHHHHCCCCEEEECCCH
T ss_conf 9999999875278877744776369999999999974899879879899999954967-----99985589999981716
Q ss_pred HHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCC
Q ss_conf 5456430242152388765247878743454430135514414444322014679999863101688452475760-013
Q gi|254780327|r 216 SIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLHPSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSF-ENV 294 (890)
Q Consensus 216 SiLiDeartPLiIsg~~~~~~~~~~~~~~~~~~l~~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~-~~~ 294 (890)
T Consensus 183 ~l~~~-kR-----------G~~l~l~L-~RL~~~~~~~~~------rigl-----------------------SATv~~- 219 (878)
T PRK13767 183 SLAEN-KR-----------GVHLSLSL-ERLEELVGGEFV------RIGL-----------------------SATIEP- 219 (878)
T ss_pred HHHCC-CC-----------HHHHHHHH-HHHHHHCCCCCE------EEEE-----------------------ECCCCC-
T ss_conf 75247-74-----------58999999-999986689987------9999-----------------------646489-
Q ss_pred HHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHC
Q ss_conf 38999999999999852697316108937897554585156862112348999999730248431256643488998303
Q gi|254780327|r 295 AIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFTGRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKY 374 (890)
Q Consensus 295 ~~~~~i~~al~A~~~~~~d~~Yiv~~~~v~ivDe~TGr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y 374 (890)
T Consensus 220 -------~~~~a~~L~g~~--~~g~~r~~~iv~~~~~k~~---------------------------------------- 250 (878)
T PRK13767 220 -------LEEVAKFLVGYN--DDGEPRDCEIVDTRFAKPI---------------------------------------- 250 (878)
T ss_pred -------HHHHHHHHCCCC--CCCCCCCEEEECCCCCCCC----------------------------------------
T ss_conf -------999999851556--6799985289546877874----------------------------------------
Q ss_pred CCHHCCCCCCHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Q ss_conf 20000134305489999987199679807899622430203422377889999999999997409907986111678999
Q gi|254780327|r 375 RKLSGMTGTASTEAEELANIYNLDVIEVPTNVPVIRIDEHDEIYRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEY 454 (890)
Q Consensus 375 ~kl~GmTGTa~te~~Ef~~iY~l~v~~iPtnkp~~r~d~~d~v~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ 454 (890)
T Consensus 251 ---------------------~~~~~-~p---------~~~~~~~~~~~~~~~~~~~l~~~i~~~~~tLvF~NtR~~aE~ 299 (878)
T PRK13767 251 ---------------------DIKVL-CP---------VDDLIHTPAEEISEALYETLDELIQEHRTTLIFTNTRSGAER 299 (878)
T ss_pred ---------------------EEEEE-CC---------CCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHH
T ss_conf ---------------------26884-45---------621245885568999999999999838977999155899999
Q ss_pred HHHHHHHCCC---------CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCC
Q ss_conf 9999986077---------10223102247788888753055870488750244665540
Q gi|254780327|r 455 LASQLRKHKF---------TKFQILNALYHEKEAYIISQAGIPGAVTIATNMAGRGTDIQ 505 (890)
Q Consensus 455 ls~~L~~~~~---------~~h~vLNAk~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI~ 505 (890)
T Consensus 300 ~~~~L~~~~~~~~~~~~i~~HHgSls~-e~R~~vE~~lk~G~l-~~vV~TsSLELGIDiG 357 (878)
T PRK13767 300 VVYKLRKRYPEEYDEDNIGAHHSSLSR-EVRLEVEEKLKRGEL-KVVVSSTSLELGIDIG 357 (878)
T ss_pred HHHHHHHHHHHCCCCCCEEEECCCCCH-HHHHHHHHHHHCCCC-CEEEEECHHHCCCCCC
T ss_conf 999999853430675432220177899-999999999857998-6899827365077777