HHsearch alignment for GI: 254780327 and conserved domain: TIGR00643
>TIGR00643 recG ATP-dependent DNA helicase RecG; InterPro: IPR004609 The ATP-dependent DNA helicase RecG 3.6.1 from EC plays a critical role in recombination and DNA repair. It helps to process Holliday junction intermediates to mature products by catalysing branch migration. RecG has DNA unwinding activity characteristic of a DNA helicase with 3' to 5' polarity.; GO: 0004003 ATP-dependent DNA helicase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.60 E-value=0.00037 Score=53.29 Aligned_cols=248 Identities=23% Similarity=0.255 Sum_probs=157.2
Q ss_pred HCCCCEEEECCCCCHHHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHC---
Q ss_conf 70794506733680689999999998607999569746927738759999999988294367635987988997402---
Q gi|254780327|r 97 LHKGCVAEMKTGEGKTLAAVLPVYLNALSGKGVHVVTVNDYLARRDSNTMSAIYKFLGLSTGVVFHDLSDDKRRAAY--- 173 (890)
Q Consensus 97 l~~g~iaem~TGEGKTL~a~l~~~lnal~g~~vhvvTvNdyLA~RDa~~m~~~y~~lglsvg~~~~~~~~~~r~~~Y--- 173 (890)
T Consensus 332 LlQGD-----VGSGKT~VA~la~l~~i~~GYQ~ALMAPTEiLA~QHy~~~~~~l~p~~~~vaLLTGs~k~~~r~~~~e~i 406 (721)
T TIGR00643 332 LLQGD-----VGSGKTLVAALAMLAAIESGYQVALMAPTEILAEQHYDSLRNLLAPLGIEVALLTGSLKGKQRKELLETI 406 (721)
T ss_pred CCCCC-----CCCHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH
T ss_conf 21101-----0663899999999999846980999177689999999999996235485788861566787899999998
Q ss_pred ---CCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHHHHHCCCEEECCCCCCCHHHHHHHHHHHHHHC
Q ss_conf ---56353344343211122143200002210266743886120354564302421523887652478787434544301
Q gi|254780327|r 174 ---ACDITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFIDEARTPLIISGPVEDHSDLYRTIDSIIIQLH 250 (890)
Q Consensus 174 ---~~di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLiDeartPLiIsg~~~~~~~~~~~~~~~~~~l~ 250 (890)
T Consensus 407 ~~G~~~~~vGTHALiq-----e~-------vef~~L~lVIiDE------------------------------------- 437 (721)
T TIGR00643 407 ASGEIHLVVGTHALIQ-----EK-------VEFKRLGLVIIDE------------------------------------- 437 (721)
T ss_pred HCCCCEEEEHHHHHHH-----HH-------HHHHCCCEEEEEC-------------------------------------
T ss_conf 6395205733135545-----21-------4431477489932-------------------------------------
Q ss_pred CCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCCEEEEECCC
Q ss_conf 35514414444322014679999863101688452475760013389999999999998526973161089378975545
Q gi|254780327|r 251 PSDYEIDEKQRTVHFSEKGTERIEELLHGENLLKSGGLYSFENVAIVHLINNALKSHTLFLRNRDYIVNRDEVVIIDEFT 330 (890)
Q Consensus 251 ~~dy~id~~~~~v~lt~~G~~~~e~~~~~~~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~~Yiv~~~~v~ivDe~T 330 (890)
T Consensus 438 --------QHR---------------F----------------------------------------------------- 441 (721)
T TIGR00643 438 --------QHR---------------F----------------------------------------------------- 441 (721)
T ss_pred --------CCC---------------C-----------------------------------------------------
T ss_conf --------335---------------6-----------------------------------------------------
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHCCCCC------CHHHHHHHHHHHCCCEEEECC
Q ss_conf 85156862112348999999730248431256643488998303200001343------054899999871996798078
Q gi|254780327|r 331 GRMMPGRRYSDGQHQALEAKERVKIQPENQTLSSITFQNYFLKYRKLSGMTGT------ASTEAEELANIYNLDVIEVPT 404 (890)
Q Consensus 331 Gr~~~gr~~~~GlhQaieaKe~v~i~~e~~t~a~it~qn~Fr~y~kl~GmTGT------a~te~~Ef~~iY~l~v~~iPt 404 (890)
T Consensus 442 -----------GV~QR~~L~~KG~~~------------~~~G~~PH~L~MtATPIPRTLALt~yG------Dld~S~I~e 492 (721)
T TIGR00643 442 -----------GVEQRKKLREKGQEG------------SMIGFAPHVLVMTATPIPRTLALTVYG------DLDVSIIDE 492 (721)
T ss_pred -----------HHHHHHHHHHHHHCC------------CCCCCCCCEEEEECCCCHHHHHHHHHH------CCEEEEECC
T ss_conf -----------078999999862206------------886777776466378814789977650------000334316
Q ss_pred CCCEEEEECHHHHC-CCHH-HHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHH-H--------HHHHCCC--CHHHHHH
Q ss_conf 99622430203422-3778-8999999999999740990798611167899999-9--------9986077--1022310
Q gi|254780327|r 405 NVPVIRIDEHDEIY-RTSE-EKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLA-S--------QLRKHKF--TKFQILN 471 (890)
Q Consensus 405 nkp~~r~d~~d~v~-~t~~-~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls-~--------~L~~~~~--~~h~vLN 471 (890)
T Consensus 493 -lP~GR~pi~T~~~~~~~~~aW~~~v~~~~~~E~~~GrQaYvv~PlI~ESE~lp~lk~A~~~~~~l~~~f~~~~~v~LlH 571 (721)
T TIGR00643 493 -LPPGRKPITTYLIKHKEKGAWIDIVYEFIEEEIAKGRQAYVVYPLIEESEKLPDLKAAEALYERLKKAFLPKYNVGLLH 571 (721)
T ss_pred -CCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf -8545933899888427887756899999999983289089996440320047168999999999888612210011330
Q ss_pred HH--HHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
Q ss_conf 22--4778888875305587048875024466554
Q gi|254780327|r 472 AL--YHEKEAYIISQAGIPGAVTIATNMAGRGTDI 504 (890)
Q Consensus 472 Ak--~~~~Ea~Iia~AG~~g~vTiATNMAGRGTDI 504 (890)
T Consensus 572 Grm~~~eK~~vm~~F~~~~~~ILVsTTVIEVGVDV 606 (721)
T TIGR00643 572 GRMKSDEKEAVMEEFREGEVDILVSTTVIEVGVDV 606 (721)
T ss_pred CCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEC
T ss_conf 68984789999998521583699997689998617