HHsearch alignment for GI: 254780327 and conserved domain: TIGR03158

>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.06  E-value=0.36  Score=28.90  Aligned_cols=78  Identities=15%  Similarity=0.193  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHH--CCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf             99999999999974--09907986111678999999998607710223-1022477888887530558704887502446
Q gi|254780327|r  424 KYAAIIAEIIDSHK--KGQPVLVGTPSIEKSEYLASQLRKHKFTKFQI-LNALYHEKEAYIISQAGIPGAVTIATNMAGR  500 (890)
Q Consensus       424 k~~ai~~~i~~~~~--~grpvLvgt~sve~Se~ls~~L~~~~~~~h~v-LNAk~~~~Ea~Iia~AG~~g~vTiATNMAGR  500 (890)
T Consensus       255 ~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~--~rek~~~-~~~vVaTsaLEl  330 (357)
T TIGR03158       255 ELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGL-GDDIGRITGFAPKK--DRERAMQ-FDILLGTSTVDV  330 (357)
T ss_pred             HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CCHHHHHCCCCHHH--HHHCCCC-CCEEEECCCCEE
T ss_conf             9999999999999985267179995589999999999986336-41145542556188--9850489-999998770103


Q ss_pred             CCCCC
Q ss_conf             65540
Q gi|254780327|r  501 GTDIQ  505 (890)
Q Consensus       501 GTDI~  505 (890)
T Consensus       331 GIDi~  335 (357)
T TIGR03158       331 GVDFK  335 (357)
T ss_pred             EEECC
T ss_conf             56117