HHsearch alignment for GI: 254780327 and conserved domain: TIGR03158
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=95.06 E-value=0.36 Score=28.90 Aligned_cols=78 Identities=15% Similarity=0.193 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHH--CCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHHHHHHHHHCCCCCCEEEEEECCCC
Q ss_conf 99999999999974--09907986111678999999998607710223-1022477888887530558704887502446
Q gi|254780327|r 424 KYAAIIAEIIDSHK--KGQPVLVGTPSIEKSEYLASQLRKHKFTKFQI-LNALYHEKEAYIISQAGIPGAVTIATNMAGR 500 (890)
Q Consensus 424 k~~ai~~~i~~~~~--~grpvLvgt~sve~Se~ls~~L~~~~~~~h~v-LNAk~~~~Ea~Iia~AG~~g~vTiATNMAGR 500 (890)
T Consensus 255 ~~~~~~~~~~~~~~~~~~~r~~v~~~s~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~--~rek~~~-~~~vVaTsaLEl 330 (357)
T TIGR03158 255 ELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGL-GDDIGRITGFAPKK--DRERAMQ-FDILLGTSTVDV 330 (357)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHCCC-CCHHHHHCCCCHHH--HHHCCCC-CCEEEECCCCEE
T ss_conf 9999999999999985267179995589999999999986336-41145542556188--9850489-999998770103
Q ss_pred CCCCC
Q ss_conf 65540
Q gi|254780327|r 501 GTDIQ 505 (890)
Q Consensus 501 GTDI~ 505 (890)
T Consensus 331 GIDi~ 335 (357)
T TIGR03158 331 GVDFK 335 (357)
T ss_pred EEECC
T ss_conf 56117