HHsearch alignment for GI: 254780327 and conserved domain: cd00079
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process.
Probab=98.93 E-value=1.8e-08 Score=88.49 Aligned_cols=121 Identities=30% Similarity=0.339 Sum_probs=98.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHCCCCHHHHHHHHH--HHHHHHHHH-HCCCCCCEEEE
Q ss_conf 237788999999999999740990798611167899999999860771022310224--778888875-30558704887
Q gi|254780327|r 418 YRTSEEKYAAIIAEIIDSHKKGQPVLVGTPSIEKSEYLASQLRKHKFTKFQILNALY--HEKEAYIIS-QAGIPGAVTIA 494 (890)
Q Consensus 418 ~~t~~~k~~ai~~~i~~~~~~grpvLvgt~sve~Se~ls~~L~~~~~~~h~vLNAk~--~~~Ea~Iia-~AG~~g~vTiA 494 (890)
T Consensus 7 ~~~~~~K~~~l~~~i~~~~~~~~kviIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~R~~~~~~F~~~-~~~ilv~ 84 (131)
T cd00079 7 LPVEDEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGSQEEREEVLKDFREG-EIVVLVA 84 (131)
T ss_pred EECCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHHH-CEEEEEE
T ss_conf 93866999999999999997899099997889999999999955899-899998999999999999997754-0104887
Q ss_pred EECCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHCCCCCC
Q ss_conf 50244665540276755788865113575530089999999987764333454076279982677532335542054345
Q gi|254780327|r 495 TNMAGRGTDIQLGGNVAMRIEHELANISDEEIRNKRIKMIQEEVQSLKEKAIVAGGLYVISTERHESRRIDNQLRGRSGR 574 (890)
Q Consensus 495 TNMAGRGTDI~Lgg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGL~VigterhesrRid~QlrGRagR 574 (890)
T Consensus 85 t~~~~~Gldl~-------------------------------------------~~~~vI~~~~~~s~~~~~Q~~GR~~R 121 (131)
T cd00079 85 TDVIARGIDLP-------------------------------------------NVSVVINYDLPWSPSSYLQRIGRAGR 121 (131)
T ss_pred EECCEECCCCC-------------------------------------------CCCEEEEECCCCCHHHHHHHHHCCCC
T ss_conf 51120036610-------------------------------------------28799997899698999989721670
Q ss_pred CCCCCCEEE
Q ss_conf 668672389
Q gi|254780327|r 575 QGDPGRSKF 583 (890)
Q Consensus 575 QGdpG~s~f 583 (890)
T Consensus 122 ~gq~~~~~~ 130 (131)
T cd00079 122 AGQKGTAIL 130 (131)
T ss_pred CCCCEEEEE
T ss_conf 899637997