HHsearch alignment for GI: 254780327 and conserved domain: smart00487
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.76 E-value=0.00019 Score=55.62 Aligned_cols=128 Identities=23% Similarity=0.107 Sum_probs=84.1
Q ss_pred CCCCCCHHHHHHHHHHCC---CCEEEECCCCCHHHHHHHHHHHHHHCC--CCCEEECCCCHHHHHHHHHHHHHHHHH---
Q ss_conf 087684479999999707---945067336806899999999986079--995697469277387599999999882---
Q gi|254780327|r 82 LGMRPFDVQLLGGMILHK---GCVAEMKTGEGKTLAAVLPVYLNALSG--KGVHVVTVNDYLARRDSNTMSAIYKFL--- 153 (890)
Q Consensus 82 lg~~~~dvQl~g~~~l~~---g~iaem~TGEGKTL~a~l~~~lnal~g--~~vhvvTvNdyLA~RDa~~m~~~y~~l--- 153 (890)
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~~~~~i~~~tGsGKT~~~~~~~~~~~~~~~~~~~li~~P~~~l~~---q~~~~~~~~~~~~ 81 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAE---QWAEELKKLGPSL 81 (201)
T ss_pred CCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHH---HHHHHHHHCCCCC
T ss_conf 7999998899999999838998899899996099999999999863389975999908599999---9998860102102
Q ss_pred -CCCEEEECCCCCHHHHHHHCCC--CCCCCCCCCCCCCCCHHHHHHCHHHHCCCCCCEEEEECCHHHHH
Q ss_conf -9436763598798899740256--35334434321112214320000221026674388612035456
Q gi|254780327|r 154 -GLSTGVVFHDLSDDKRRAAYAC--DITYITNNELGFDYLRDNMQYRRVDMVQRGHNFAIVDEVDSIFI 219 (890)
Q Consensus 154 -glsvg~~~~~~~~~~r~~~Y~~--di~Y~t~~e~gfDyLrDnm~~~~~~~v~r~~~~aivDEvDSiLi 219 (890)
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~t~~~l~~~~~~~~-------~~~~~~~~vIiDE~H~~~~ 143 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL-------LELSNVDLVILDEAHRLLD 143 (201)
T ss_pred EEEEEEEECCCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHCC-------CCCCCCEEEEEECHHHHHC
T ss_conf 0445565247737999999975999899955899999997275-------4525431999989677512