HHsearch alignment for GI: 254780328 and conserved domain: COG1088

>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=465.61  Aligned_cols=308  Identities=28%  Similarity=0.414  Sum_probs=280.0

Q ss_pred             CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCC-HHHH------CCCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf             479996878827799999999879--8899992687675-2130------238679842689999999987569889995
Q gi|254780328|r    4 KNVLVVGGAGYIGAHTCRVLYERG--FLPIVLDNLSSGH-AEFV------LWGPLEQVDICDYTNLRAVFAKYQPASVMH   74 (333)
Q Consensus         4 kkIlItG~tGfiGs~l~~~L~~~g--~~v~~~d~~~~~~-~~~~------~~~~~~~~Di~d~~~l~~~~~~~~~d~ViH   74 (333)
T Consensus         1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh   80 (340)
T COG1088           1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH   80 (340)
T ss_pred             CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf             93799657515778999999960997528997523315778788864069971588545547999999997448875998


Q ss_pred             CHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             71440112234310012330123332221122222222-2222333322222222--22222222222222222222333
Q gi|254780328|r   75 FAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVR-RFIFSSTCATYGIPHN--TIITENDPQESITPYGYTKYVVE  151 (333)
Q Consensus        75 lAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vYG~~~~--~~~~E~~~~~p~~~Yg~sK~~~E  151 (333)
T Consensus        81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD  160 (340)
T COG1088          81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD  160 (340)
T ss_pred             ECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             11001332233570553400028799999999984666207994152102566678887544799999997404455678


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             22222222222222222222222222222222233333222222222222222222222222222223221100111110
Q gi|254780328|r  152 RELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDL  231 (333)
Q Consensus       152 ~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~  231 (333)
T Consensus       161 ~lVray~~TYglp~~ItrcSNNYGPyqf--------p-EKlIP~~I~nal~g-~~lpvYG------dG~~iRDWl~VeDh  224 (340)
T COG1088         161 LLVRAYVRTYGLPATITRCSNNYGPYQF--------P-EKLIPLMIINALLG-KPLPVYG------DGLQIRDWLYVEDH  224 (340)
T ss_pred             HHHHHHHHHCCCCEEEECCCCCCCCCCC--------C-HHHHHHHHHHHHCC-CCCCEEC------CCCCEEEEEEEHHH
T ss_conf             9999999871996698447777688767--------1-55667999999739-9985436------98540205871757


Q ss_pred             CCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC-----EEECCCCCCCCCEEEECHHHHHHHHCCCC
Q ss_conf             0000001110023587310364179980299999999998378987-----59857898886222127089999818876
Q gi|254780328|r  232 ANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFP-----ITYESRRIGDPPSLVADNKKAKKILGWNP  306 (333)
Q Consensus       232 ~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~-----i~~~~~~~~~~~~~~~d~~k~~~~LGw~p  306 (333)
T Consensus       225 ~~ai~~Vl~k---g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P  301 (340)
T COG1088         225 CRAIDLVLTK---GKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRP  301 (340)
T ss_pred             HHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCEEECHHHHHHHCCCCC
T ss_conf             8899999956---8677668717875200799999999986766511041247616789975010106677765429886


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             107999999999999972422001
Q gi|254780328|r  307 KYKLRDIIESAWNWHLKYPRSLSN  330 (333)
Q Consensus       307 ~~~leegi~~~i~~~~~~~~~~~~  330 (333)
T Consensus       302 ~~~fe~GlrkTv~WY~~N~~Ww~~  325 (340)
T COG1088         302 QETFETGLRKTVDWYLDNEWWWEP  325 (340)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf             788888999999999855777776