HHsearch alignment for GI: 254780328 and conserved domain: COG1088
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=465.61 Aligned_cols=308 Identities=28% Similarity=0.414 Sum_probs=280.0
Q ss_pred CEEEEECCCCHHHHHHHHHHHHCC--CEEEEEECCCCCC-HHHH------CCCCEEEEECCCHHHHHHHHHHCCCCEEEE
Q ss_conf 479996878827799999999879--8899992687675-2130------238679842689999999987569889995
Q gi|254780328|r 4 KNVLVVGGAGYIGAHTCRVLYERG--FLPIVLDNLSSGH-AEFV------LWGPLEQVDICDYTNLRAVFAKYQPASVMH 74 (333)
Q Consensus 4 kkIlItG~tGfiGs~l~~~L~~~g--~~v~~~d~~~~~~-~~~~------~~~~~~~~Di~d~~~l~~~~~~~~~d~ViH 74 (333)
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D~~~v~~~~~~~~~D~Vvh 80 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVH 80 (340)
T ss_pred CCEEEECCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCEEEE
T ss_conf 93799657515778999999960997528997523315778788864069971588545547999999997448875998
Q ss_pred CHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 71440112234310012330123332221122222222-2222333322222222--22222222222222222222333
Q gi|254780328|r 75 FAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNVR-RFIFSSTCATYGIPHN--TIITENDPQESITPYGYTKYVVE 151 (333)
Q Consensus 75 lAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vYG~~~~--~~~~E~~~~~p~~~Yg~sK~~~E 151 (333)
T Consensus 81 fAAESHVDRSI~~P~~Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD 160 (340)
T COG1088 81 FAAESHVDRSIDGPAPFIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASD 160 (340)
T ss_pred ECHHCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 11001332233570553400028799999999984666207994152102566678887544799999997404455678
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 22222222222222222222222222222222233333222222222222222222222222222223221100111110
Q gi|254780328|r 152 RELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHVLDL 231 (333)
Q Consensus 152 ~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v~D~ 231 (333)
T Consensus 161 ~lVray~~TYglp~~ItrcSNNYGPyqf--------p-EKlIP~~I~nal~g-~~lpvYG------dG~~iRDWl~VeDh 224 (340)
T COG1088 161 LLVRAYVRTYGLPATITRCSNNYGPYQF--------P-EKLIPLMIINALLG-KPLPVYG------DGLQIRDWLYVEDH 224 (340)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCCCCC--------C-HHHHHHHHHHHHCC-CCCCEEC------CCCCEEEEEEEHHH
T ss_conf 9999999871996698447777688767--------1-55667999999739-9985436------98540205871757
Q ss_pred CCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC-----EEECCCCCCCCCEEEECHHHHHHHHCCCC
Q ss_conf 0000001110023587310364179980299999999998378987-----59857898886222127089999818876
Q gi|254780328|r 232 ANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFP-----ITYESRRIGDPPSLVADNKKAKKILGWNP 306 (333)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~-----i~~~~~~~~~~~~~~~d~~k~~~~LGw~p 306 (333)
T Consensus 225 ~~ai~~Vl~k---g~~GE~YNIgg~~E~~Nlevv~~i~~~l~~~~~~~~~li~~V~DRpGHD~RYaid~~Ki~~eLgW~P 301 (340)
T COG1088 225 CRAIDLVLTK---GKIGETYNIGGGNERTNLEVVKTICELLGKDKPDYRDLITFVEDRPGHDRRYAIDASKIKRELGWRP 301 (340)
T ss_pred HHHHHHHHHC---CCCCCEEEECCCCCCHHHHHHHHHHHHHCCCCCCHHHHEEECCCCCCCCCCEEECHHHHHHHCCCCC
T ss_conf 8899999956---8677668717875200799999999986766511041247616789975010106677765429886
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 107999999999999972422001
Q gi|254780328|r 307 KYKLRDIIESAWNWHLKYPRSLSN 330 (333)
Q Consensus 307 ~~~leegi~~~i~~~~~~~~~~~~ 330 (333)
T Consensus 302 ~~~fe~GlrkTv~WY~~N~~Ww~~ 325 (340)
T COG1088 302 QETFETGLRKTVDWYLDNEWWWEP 325 (340)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 788888999999999855777776