HHsearch alignment for GI: 254780328 and conserved domain: COG1089

>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00  E-value=0  Score=339.69  Aligned_cols=308  Identities=20%  Similarity=0.281  Sum_probs=257.7

Q ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHH---HH--------CCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf             64479996878827799999999879889999268767521---30--------23867984268999999998756988
Q gi|254780328|r    2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAE---FV--------LWGPLEQVDICDYTNLRAVFAKYQPA   70 (333)
Q Consensus         2 ~~kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~---~~--------~~~~~~~~Di~d~~~l~~~~~~~~~d   70 (333)
T Consensus         1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd   80 (345)
T COG1089           1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD   80 (345)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCH
T ss_conf             97269995445875389999998569489878603355776530111165557861799965543568899999860944


Q ss_pred             EEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             99957144011223431001233012333222112222222--2222233332222222222222222222222222222
Q gi|254780328|r   71 SVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNV--RRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKY  148 (333)
Q Consensus        71 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~--~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~  148 (333)
T Consensus        81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl  160 (345)
T COG1089          81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL  160 (345)
T ss_pred             HHEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf             53303432345530358640253100678899999997487660799656177606766675446899988977889998


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf             33322222222222222222222222222222222233333222222222222222222222222222223221100111
Q gi|254780328|r  149 VVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHV  228 (333)
Q Consensus       149 ~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v  228 (333)
T Consensus       161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~-----FVTRKIt~ava~Ik~G~q~~l~l-GN------ldAkRDWG~A  228 (345)
T COG1089         161 YAYWITVNYRESYGLFACNGILFNHESPLRGET-----FVTRKITRAVARIKLGLQDKLYL-GN------LDAKRDWGHA  228 (345)
T ss_pred             HHHHEEEEHHHHCCCEEECCEEECCCCCCCCCC-----EEHHHHHHHHHHHHCCCCCEEEE-CC------CCCCCCCCCH
T ss_conf             777603014763473343114433789877531-----03389999999987066126874-36------3310234316


Q ss_pred             CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC-------------------EEECC--CCCCC
Q ss_conf             1100000001110023587310364179980299999999998378987-------------------59857--89888
Q gi|254780328|r  229 LDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFP-------------------ITYES--RRIGD  287 (333)
Q Consensus       229 ~D~~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~-------------------i~~~~--~~~~~  287 (333)
T Consensus       229 ~DYVe~mwlmLQq----~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~tG~~~V~idp~~fRPaE  304 (345)
T COG1089         229 KDYVEAMWLMLQQ----EEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE  304 (345)
T ss_pred             HHHHHHHHHHHCC----CCCCCEEEECCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf             7899999999744----799844885275223999999999970855887303553113124567526998701068312


Q ss_pred             CCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             62221270899998188761079999999999999724
Q gi|254780328|r  288 PPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYP  325 (333)
Q Consensus       288 ~~~~~~d~~k~~~~LGw~p~~~leegi~~~i~~~~~~~  325 (333)
T Consensus       305 Vd~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~  342 (345)
T COG1089         305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA  342 (345)
T ss_pred             HHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             55652887898997099666679999999999999986