HHsearch alignment for GI: 254780328 and conserved domain: COG1089
>COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane].
Probab=100.00 E-value=0 Score=339.69 Aligned_cols=308 Identities=20% Similarity=0.281 Sum_probs=257.7
Q ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHH---HH--------CCCCEEEEECCCHHHHHHHHHHCCCC
Q ss_conf 64479996878827799999999879889999268767521---30--------23867984268999999998756988
Q gi|254780328|r 2 ENKNVLVVGGAGYIGAHTCRVLYERGFLPIVLDNLSSGHAE---FV--------LWGPLEQVDICDYTNLRAVFAKYQPA 70 (333)
Q Consensus 2 ~~kkIlItG~tGfiGs~l~~~L~~~g~~v~~~d~~~~~~~~---~~--------~~~~~~~~Di~d~~~l~~~~~~~~~d 70 (333)
T Consensus 1 ~~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri~L~~~~~~~~~~l~l~~gDLtD~~~l~r~l~~v~Pd 80 (345)
T COG1089 1 MGKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRIHLYEDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPD 80 (345)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCCH
T ss_conf 97269995445875389999998569489878603355776530111165557861799965543568899999860944
Q ss_pred EEEECHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99957144011223431001233012333222112222222--2222233332222222222222222222222222222
Q gi|254780328|r 71 SVMHFAGLTNISESVKNPSLFYEINIKGSFNLIATAIESNV--RRFIFSSTCATYGIPHNTIITENDPQESITPYGYTKY 148 (333)
Q Consensus 71 ~ViHlAa~~~~~~~~~~p~~~~~~Nv~gt~~ll~~~~~~~~--~~~i~~SS~~vYG~~~~~~~~E~~~~~p~~~Yg~sK~ 148 (333)
T Consensus 81 EIYNLaAQS~V~vSFe~P~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E~TPFyPrSPYAvAKl 160 (345)
T COG1089 81 EIYNLAAQSHVGVSFEQPEYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVAKL 160 (345)
T ss_pred HHEECCCCCCCCCCCCCCCEEEEECHHHHHHHHHHHHHHCCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHH
T ss_conf 53303432345530358640253100678899999997487660799656177606766675446899988977889998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 33322222222222222222222222222222222233333222222222222222222222222222223221100111
Q gi|254780328|r 149 VVERELLQHNKVNGLRSVVLRYFNAAGATLDSIIGEWHNPETHVIPLAIKTAMGYQNSFKVFGQDYATRDGTCLRDYIHV 228 (333)
Q Consensus 149 ~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~i~i~g~~~~~~dg~~~Rdfi~v 228 (333)
T Consensus 161 Ya~W~tvNYResYgl~AcnGILFNHESP~Rge~-----FVTRKIt~ava~Ik~G~q~~l~l-GN------ldAkRDWG~A 228 (345)
T COG1089 161 YAYWITVNYRESYGLFACNGILFNHESPLRGET-----FVTRKITRAVARIKLGLQDKLYL-GN------LDAKRDWGHA 228 (345)
T ss_pred HHHHEEEEHHHHCCCEEECCEEECCCCCCCCCC-----EEHHHHHHHHHHHHCCCCCEEEE-CC------CCCCCCCCCH
T ss_conf 777603014763473343114433789877531-----03389999999987066126874-36------3310234316
Q ss_pred CCCCCCCHHHHHHCCCCCCCCEEEEECCCCEEHHHHHHHHHHHHCCCCC-------------------EEECC--CCCCC
Q ss_conf 1100000001110023587310364179980299999999998378987-------------------59857--89888
Q gi|254780328|r 229 LDLANAHIMALEYLINQGDSIAINLGTGTGITVKEIISTIQSMYECAFP-------------------ITYES--RRIGD 287 (333)
Q Consensus 229 ~D~~~a~~~~~~~~~~~~~~~~~Nig~~~~~si~~l~~~i~~~~g~~~~-------------------i~~~~--~~~~~ 287 (333)
T Consensus 229 ~DYVe~mwlmLQq----~~PddyViATg~t~sVrefv~~Af~~~g~~l~w~g~g~~e~g~da~tG~~~V~idp~~fRPaE 304 (345)
T COG1089 229 KDYVEAMWLMLQQ----EEPDDYVIATGETHSVREFVELAFEMVGIDLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAE 304 (345)
T ss_pred HHHHHHHHHHHCC----CCCCCEEEECCCEEEHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCEEEEECCCCCCCHH
T ss_conf 7899999999744----799844885275223999999999970855887303553113124567526998701068312
Q ss_pred CCEEEECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 62221270899998188761079999999999999724
Q gi|254780328|r 288 PPSLVADNKKAKKILGWNPKYKLRDIIESAWNWHLKYP 325 (333)
Q Consensus 288 ~~~~~~d~~k~~~~LGw~p~~~leegi~~~i~~~~~~~ 325 (333)
T Consensus 305 Vd~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~~~ 342 (345)
T COG1089 305 VDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLEAA 342 (345)
T ss_pred HHHHCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 55652887898997099666679999999999999986